ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf77o12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK058258:Os07g0454700 270 2e-72
2AK058445:Os01g0513700 67 2e-11
3AK068877:Os01g0513700 64 2e-10
4Os02g0445700:Os02g0445700 29 6.3
5AK112052:Os03g0254700 28 8.3
6AK111518:Os03g0254700 28 8.3
7Os04g0212100:Os04g0212100 28 8.3

>AK058258:Os07g0454700 |
          Length = 143
 Score =  270 bits (689), Expect = 2e-72
 Identities = 131/143 (91%), Positives = 133/143 (93%)
 Frame = +2

Query: 356 MGTVAIYSLFIINKSGGLIYYKDYGSAGRMDTNDSLRLASLWHSMHAISQQLSPTTGCTG 535
           M   AIYSLFIINKSGGLIYYKDYGSAGR DTNDSLRLASLWHSMHAISQQLSPT GC G
Sbjct: 1   MALAAIYSLFIINKSGGLIYYKDYGSAGRTDTNDSLRLASLWHSMHAISQQLSPTPGCEG 60

Query: 536 IDLLQAHNFDLHCFQSLTGTKFFVVCETGAQNMEILLKTIYELYTEFVLKNPFYEMEMPI 715
           IDLLQAHNFDLHCFQSLTGTKFF VCETGAQN+E LLK IYELYT+FVLKNPFYEMEMPI
Sbjct: 61  IDLLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIYELYTDFVLKNPFYEMEMPI 120

Query: 716 RCELFDLNLAQVIQKDRVALLGR 784
           RCELFDLNLAQVIQKDRV LLGR
Sbjct: 121 RCELFDLNLAQVIQKDRVTLLGR 143



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>AK058445:Os01g0513700 |
          Length = 179

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 19/163 (11%)
 Frame = +2

Query: 326 VNSAQPSPVA---MGTVA-IYSLFIINKSGGLIYYKDYGSAGRM--DTNDSLRLASLWHS 487
           V  A P+P A    GT A    L++ N+ G  + Y+++    R    T D   +  L  S
Sbjct: 14  VPDATPAPAAPPGTGTGANAQVLYVFNRGGVCLLYREWHRPLRTLDPTQDQKLMFGLLFS 73

Query: 488 MHAISQQLSPTT---GCTGIDLL----------QAHNFDLHCFQSLTGTKFFVVCETGAQ 628
           + + + ++ PTT   G  G+ LL          + + + L+  +S +G K  ++      
Sbjct: 74  LRSFTAKIDPTTAEKGNLGVPLLPGQGCSFYSFKTNTYKLNFLESPSGIKLILITHPRTG 133

Query: 629 NMEILLKTIYELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQ 757
           +    LK IY LY E+V+KNP Y    PI+CELF+ +L Q ++
Sbjct: 134 DQRDTLKHIYNLYVEYVVKNPLYAPGTPIKCELFNKHLDQYVK 176



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>AK068877:Os01g0513700 |
          Length = 180

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 20/164 (12%)
 Frame = +2

Query: 326 VNSAQPSPVA---MGTVA-IYSLFIINKSGGLIYYKDYGSAGRM--DTNDSLRLASLWHS 487
           V  A P+P A    GT A    L++ N+ G  + Y+++    R    T D   +  L  S
Sbjct: 14  VPDATPAPAAPPGTGTGANAQVLYVFNRGGVCLLYREWHRPLRTLDPTQDQKLMFGLLFS 73

Query: 488 MHAISQQLSPTT---GCTGIDLL----------QAHNFDLHCFQSLTGTKFFVVCETGAQ 628
           + + + ++ PTT   G  G+ LL          + + + L+  +S +G K  ++      
Sbjct: 74  LRSFTAKIDPTTAEKGNLGVPLLPGQGCSFYSFKTNTYKLNFLESPSGIKLILITHPRTG 133

Query: 629 NMEILLKTIYELYTEFVLKNPFYEMEMPI-RCELFDLNLAQVIQ 757
           +    LK IY LY E+V+KNP Y    PI RCELF+ +L Q ++
Sbjct: 134 DQRDTLKHIYNLYVEYVVKNPLYAPGTPINRCELFNKHLDQYVK 177



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>Os02g0445700:Os02g0445700 |
          Length = 539

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 34/144 (23%), Positives = 46/144 (31%), Gaps = 33/144 (22%)
 Frame = +3

Query: 252 PALRRTSSPRLRPEQRSPAGPGXXXXXXXXXXXWPWGQLRSTAFSSSIS---LVASYTTR 422
           P    +S PRL       + P            W WG+ R     S +    L A    R
Sbjct: 18  PVATPSSDPRLAAAGTGASTPPPPLPRRRMWSGWRWGRRRGRGACSPVDPAVLEAGLVWR 77

Query: 423 TMARQGE--------------------WTPTTVYASRVSGTLCTQSPSSCPL-------- 518
            +A  G+                    W   T  +S  S +    SPSS PL        
Sbjct: 78  LLAAAGQLTRGGAVAVAVDALLFEHLWWLQHTPTSSLPSPSWVINSPSSRPLAPPDSVDV 137

Query: 519 --PLAVLALTSYKPTILTSIASNP 584
             PLA++   +  P  L S A+ P
Sbjct: 138 IPPLAIVGRRAATPPPLPSHAAGP 161



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>AK112052:Os03g0254700 |
          Length = 336

 Score = 28.5 bits (62), Expect = 8.3
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = +3

Query: 459 VYASRVSGTLCTQSPSSCPLPLAVLALTSYKPTILTS------IASNPSQGRNFSL 608
           +YAS +  T+C  + SS  L   +L   SY P  ++S      +A++PS+   F+L
Sbjct: 234 IYASFLDATVCIFNASSLRLQCRILP-ASYLPQNISSNVYPVVVAAHPSEANQFAL 288



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>AK111518:Os03g0254700 |
          Length = 1133

 Score = 28.5 bits (62), Expect = 8.3
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = +3

Query: 459  VYASRVSGTLCTQSPSSCPLPLAVLALTSYKPTILTS------IASNPSQGRNFSL 608
            +YAS +  T+C  + SS  L   +L   SY P  ++S      +A++PS+   F+L
Sbjct: 1031 IYASFLDATVCIFNASSLRLQCRILP-ASYLPQNISSNVYPVVVAAHPSEANQFAL 1085



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>Os04g0212100:Os04g0212100 |
          Length = 545

 Score = 28.5 bits (62), Expect = 8.3
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 466 PRESLALYARNLPAAVP--YHWLYWH*PLTSPQF*PPLLPIPHRDEIFR 606
           P+   AL    LP+A    Y+WL W  P   P   PP  P PH  ++ R
Sbjct: 31  PQSITALLNNPLPSASSSSYYWLTWPPPTPLPDAPPP--PPPHPCDVSR 77


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 28,115,321
Number of extensions: 628469
Number of successful extensions: 1506
Number of sequences better than 10.0: 7
Number of HSP's gapped: 1504
Number of HSP's successfully gapped: 7
Length of query: 351
Length of database: 15,399,855
Length adjustment: 102
Effective length of query: 249
Effective length of database: 11,315,673
Effective search space: 2817602577
Effective search space used: 2817602577
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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