ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf77o12 |
|---|---|
| Clone Library Name | barley_pub |
>Q9ES56:TPPC4_MOUSE Trafficking protein particle complex subunit 4 - Mus musculus| (Mouse) Length = 219 Score = 122 bits (307), Expect = 2e-27 Identities = 55/106 (51%), Positives = 77/106 (72%) Frame = +2 Query: 440 RMDTNDSLRLASLWHSMHAISQQLSPTTGCTGIDLLQAHNFDLHCFQSLTGTKFFVVCET 619 R+ +N+ L LAS++HS+ AI QLSP G +GI++L+ F LHCFQ+LTG KF V+ + Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161 Query: 620 GAQNMEILLKTIYELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQ 757 ++ LL+ IYE+Y++F LKNPFY +EMPIRCELFD NL ++ Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>Q2TBL9:TPPC4_BOVIN Trafficking protein particle complex subunit 4 - Bos taurus| (Bovine) Length = 219 Score = 122 bits (307), Expect = 2e-27 Identities = 55/106 (51%), Positives = 77/106 (72%) Frame = +2 Query: 440 RMDTNDSLRLASLWHSMHAISQQLSPTTGCTGIDLLQAHNFDLHCFQSLTGTKFFVVCET 619 R+ +N+ L LAS++HS+ AI QLSP G +GI++L+ F LHCFQ+LTG KF V+ + Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161 Query: 620 GAQNMEILLKTIYELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQ 757 ++ LL+ IYE+Y++F LKNPFY +EMPIRCELFD NL ++ Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207 Score = 30.8 bits (68), Expect = 9.7 Identities = 11/20 (55%), Positives = 18/20 (90%) Frame = +2 Query: 365 VAIYSLFIINKSGGLIYYKD 424 +AI+S++++NK+GGLIY D Sbjct: 1 MAIFSVYVVNKAGGLIYQLD 20
>Q5R9J9:TPPC4_PONPY Trafficking protein particle complex subunit 4 - Pongo pygmaeus| (Orangutan) Length = 219 Score = 121 bits (304), Expect = 4e-27 Identities = 54/106 (50%), Positives = 77/106 (72%) Frame = +2 Query: 440 RMDTNDSLRLASLWHSMHAISQQLSPTTGCTGIDLLQAHNFDLHCFQSLTGTKFFVVCET 619 R+ +N+ L LAS++HS+ AI QLSP G +GI++L+ F LHC+Q+LTG KF V+ + Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161 Query: 620 GAQNMEILLKTIYELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQ 757 ++ LL+ IYE+Y++F LKNPFY +EMPIRCELFD NL ++ Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207 Score = 30.8 bits (68), Expect = 9.7 Identities = 11/20 (55%), Positives = 18/20 (90%) Frame = +2 Query: 365 VAIYSLFIINKSGGLIYYKD 424 +AI+S++++NK+GGLIY D Sbjct: 1 MAIFSVYVVNKAGGLIYQLD 20
>Q9Y296:TPPC4_HUMAN Trafficking protein particle complex subunit 4 - Homo sapiens| (Human) Length = 219 Score = 121 bits (304), Expect = 4e-27 Identities = 54/106 (50%), Positives = 77/106 (72%) Frame = +2 Query: 440 RMDTNDSLRLASLWHSMHAISQQLSPTTGCTGIDLLQAHNFDLHCFQSLTGTKFFVVCET 619 R+ +N+ L LAS++HS+ AI QLSP G +GI++L+ F LHC+Q+LTG KF V+ + Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161 Query: 620 GAQNMEILLKTIYELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQ 757 ++ LL+ IYE+Y++F LKNPFY +EMPIRCELFD NL ++ Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207 Score = 30.8 bits (68), Expect = 9.7 Identities = 11/20 (55%), Positives = 18/20 (90%) Frame = +2 Query: 365 VAIYSLFIINKSGGLIYYKD 424 +AI+S++++NK+GGLIY D Sbjct: 1 MAIFSVYVVNKAGGLIYQLD 20
>Q5NCF2:TPPC1_MOUSE Trafficking protein particle complex subunit 1 - Mus musculus| (Mouse) Length = 145 Score = 50.4 bits (119), Expect = 1e-05 Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 4/135 (2%) Frame = +2 Query: 365 VAIYSLFIINKSGGLIYYKDYG---SAGRMDTNDSLRLASLWHSMHAISQQLSPTTGCTG 535 + +++L++ +++G ++Y ++ AG + + + S+ + ++SP G Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60 Query: 536 IDLLQAHNFDLHCFQSLTGTKFFVVCETGAQNMEILLKTIYE-LYTEFVLKNPFYEMEMP 712 Q + LH +++ TG K + + G + +L IY LY EFV+KNP + Sbjct: 61 FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQT 120 Query: 713 IRCELFDLNLAQVIQ 757 ++ ELF L ++ Sbjct: 121 VQSELFRSRLDSYVR 135
>Q9Y5R8:TPPC1_HUMAN Trafficking protein particle complex subunit 1 - Homo sapiens| (Human) Length = 145 Score = 48.5 bits (114), Expect = 5e-05 Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 4/135 (2%) Frame = +2 Query: 365 VAIYSLFIINKSGGLIYYKDYG---SAGRMDTNDSLRLASLWHSMHAISQQLSPTTGCTG 535 + +++L++ +++G ++Y ++ AG + + + S+ + ++SP G Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60 Query: 536 IDLLQAHNFDLHCFQSLTGTKFFVVCETGAQNMEILLKTIYE-LYTEFVLKNPFYEMEMP 712 Q + LH +++ TG K + + G + +L IY LY E V+KNP + Sbjct: 61 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120 Query: 713 IRCELFDLNLAQVIQ 757 ++ ELF L ++ Sbjct: 121 VQSELFRSRLDSYVR 135
>Q17QI1:TPPC1_BOVIN Trafficking protein particle complex subunit 1 - Bos taurus| (Bovine) Length = 145 Score = 48.5 bits (114), Expect = 5e-05 Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 4/135 (2%) Frame = +2 Query: 365 VAIYSLFIINKSGGLIYYKDYG---SAGRMDTNDSLRLASLWHSMHAISQQLSPTTGCTG 535 + +++L++ +++G ++Y ++ AG + + + S+ + ++SP G Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60 Query: 536 IDLLQAHNFDLHCFQSLTGTKFFVVCETGAQNMEILLKTIYE-LYTEFVLKNPFYEMEMP 712 Q + LH +++ TG K + + G + +L IY LY E V+KNP + Sbjct: 61 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120 Query: 713 IRCELFDLNLAQVIQ 757 ++ ELF L ++ Sbjct: 121 VQSELFRSRLDSYVR 135
>Q03784:TRS23_YEAST Transport protein particle 23 kDa subunit - Saccharomyces| cerevisiae (Baker's yeast) Length = 219 Score = 48.1 bits (113), Expect = 6e-05 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 24/100 (24%) Frame = +2 Query: 530 TGIDLLQAHNFDLHCFQSLTGTKFFVVCET-------------------GAQNMEI---- 640 +G+ L F + +Q+LTG KF + + N+ I Sbjct: 117 SGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIAD 176 Query: 641 -LLKTIYELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQ 757 L+ +Y LY+++V+K+P Y MEMPIR LFD + ++++ Sbjct: 177 NFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216 Score = 45.1 bits (105), Expect = 5e-04 Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Frame = +2 Query: 365 VAIYSLFIINKSGGLIYYKDY-GSAGRMDTNDSLRLASLWHSMHAISQQLSP 517 +AI ++ +INKSGGLIY +++ ++++N+ L LAS H + AI+ QL+P Sbjct: 1 MAIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTP 52
>Q8BXQ6:AMPO_MOUSE Aminopeptidase O - Mus musculus (Mouse)| Length = 817 Score = 36.6 bits (83), Expect = 0.18 Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 1/34 (2%) Frame = -3 Query: 727 ELTPDRHFHLVEWVLQNK-LSVQLIYCFQQDFHI 629 EL+PD+ L+EW+L+ K LS Q ++C QQ +H+ Sbjct: 703 ELSPDQIVLLLEWLLEQKTLSPQTLHCLQQTYHL 736
>Q9UT70:BET5_SCHPO Transport protein particle subunit bet5 - Schizosaccharomyces pombe| (Fission yeast) Length = 155 Score = 36.2 bits (82), Expect = 0.23 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Frame = +2 Query: 560 FDLHCFQSLTGTKFFVVCETGAQNMEILLKTIYE-LYTEFVLKNPFYEMEMP------IR 718 + LH +++ T + + ++ +L+ IY LY EFV+K+P Y P I Sbjct: 78 YKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGIN 137 Query: 719 CELFDLNLAQVIQ 757 CE+F + L + ++ Sbjct: 138 CEIFRITLDRFVR 150
>P38334:TRS20_YEAST Transport protein particle 20 kDa subunit - Saccharomyces| cerevisiae (Baker's yeast) Length = 175 Score = 34.3 bits (77), Expect = 0.88 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 8/95 (8%) Frame = +2 Query: 500 SQQLSPTTGCTGIDLLQAHNFDLHCFQSLTGTKFFVVCETGAQ--------NMEILLKTI 655 S+ ++ T C + + + + S +G KF ++ A NM + + Sbjct: 78 SRAVNNTDNCYLGKVDHFYGLAITAYISYSGMKFVMIHGNSANSSVVIDDNNMRSFYQEV 137 Query: 656 YELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQK 760 +ELY + L NPFY++ PIR FD + + +K Sbjct: 138 HELYVK-TLMNPFYKITDPIRSPAFDSRVRTLARK 171
>Q9CQP2:TPPC2_MOUSE Trafficking protein particle complex subunit 2 - Mus musculus| (Mouse) Length = 140 Score = 32.7 bits (73), Expect = 2.6 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +2 Query: 653 IYELYTEFVLKNPFYEMEMPIRCELFD 733 +Y+LY +F + NPFYE PIR FD Sbjct: 102 VYDLYIKFAM-NPFYEPNSPIRSSAFD 127
>Q3T0F2:TPPC2_BOVIN Trafficking protein particle complex subunit 2 - Bos taurus| (Bovine) Length = 140 Score = 32.7 bits (73), Expect = 2.6 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +2 Query: 653 IYELYTEFVLKNPFYEMEMPIRCELFD 733 +Y+LY +F + NPFYE PIR FD Sbjct: 102 VYDLYIKFAM-NPFYEPNSPIRSSAFD 127
>Q5RES6:TPPC2_PONPY Trafficking protein particle complex subunit 2 - Pongo pygmaeus| (Orangutan) Length = 140 Score = 32.0 bits (71), Expect = 4.4 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +2 Query: 653 IYELYTEFVLKNPFYEMEMPIRCELFD 733 +Y+LY +F + NPFYE PIR FD Sbjct: 102 VYDLYIKFSM-NPFYEPNSPIRSSAFD 127
>O14582:TPPC2_HUMAN Trafficking protein particle complex subunit 2 - Homo sapiens| (Human) Length = 140 Score = 32.0 bits (71), Expect = 4.4 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +2 Query: 653 IYELYTEFVLKNPFYEMEMPIRCELFD 733 +Y+LY +F + NPFYE PIR FD Sbjct: 102 VYDLYIKFSM-NPFYEPNSPIRSSAFD 127
>P15618:YM17_PARTE Uncharacterized mitochondrial protein ORF17 - Paramecium| tetraurelia Length = 221 Score = 31.6 bits (70), Expect = 5.7 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 12/52 (23%) Frame = +2 Query: 815 SLAISCVFFYHLCIWSPR------------TCFILKVILAHNMNAVQTFISV 934 SL +SC+FF L WSP TC +L+ LA++++A +I V Sbjct: 34 SLCLSCLFFI-LLFWSPSTSYLILVFFLLYTCVVLQTQLAYSLSAFMNYIGV 84
>Q8K2Z4:CND1_MOUSE Condensin complex subunit 1 - Mus musculus (Mouse)| Length = 1392 Score = 31.6 bits (70), Expect = 5.7 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 19/95 (20%) Frame = +2 Query: 536 IDLLQAHNFDLHCF---------------QSLTGTKFFVVCETG----AQNMEILLKTIY 658 +D+LQAH D++ F ++L T+F V A ++ K Sbjct: 366 LDILQAHGHDVNSFVRSRVLQLFARIVQQKALPLTRFQAVVALAVGRLADKSVLVCKNAI 425 Query: 659 ELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQKD 763 +L F+ NPF C+L D++LA +QK+ Sbjct: 426 QLLASFLANNPF-------SCKLSDIDLAGPLQKE 453
>Q8YVG9:DNAA_ANASP Chromosomal replication initiator protein dnaA - Anabaena sp.| (strain PCC 7120) Length = 459 Score = 31.2 bits (69), Expect = 7.4 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 8/81 (9%) Frame = -3 Query: 919 LYRIHVMSQ-NHFQDETCPR*PNTKM----VEKYTRD---CKRRCSVCSFHASPAQKCDT 764 L + H+M H++ E CP N+K+ E++T D R S+ SF + D Sbjct: 163 LGKTHLMQAIGHYRWEICP---NSKIFYVSTEQFTNDLITAIRNDSMQSFREH-YRAADV 218 Query: 763 VLLDDLG*VEVKELTPDRHFH 701 +L+DD+ +E KE T + FH Sbjct: 219 LLVDDIQFIEGKEYTQEEFFH 239
>Q28183:R157_BOVIN Retina-specific 15.7 kDa protein - Bos taurus (Bovine)| Length = 147 Score = 30.8 bits (68), Expect = 9.7 Identities = 20/70 (28%), Positives = 36/70 (51%) Frame = +3 Query: 411 YTTRTMARQGEWTPTTVYASRVSGTLCTQSPSSCPLPLAVLALTSYKPTILTSIASNPSQ 590 + T + + QG+W P T + + + ++ P SCP P A T+ PT+ T P++ Sbjct: 42 FHTDSPSIQGQWHPFTNKPTALGCS--SRGPESCPDPAASTMKTNSIPTVWT---FTPAE 96 Query: 591 GRNFSLYAKQ 620 G + S +A + Sbjct: 97 GGSCSWFASR 106
>Q9Y4X4:KLF12_HUMAN Krueppel-like factor 12 - Homo sapiens (Human)| Length = 402 Score = 30.8 bits (68), Expect = 9.7 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = +3 Query: 447 TPTTVYASRVSGTLCTQSPSSCPLPLAVLALTSYKPTILTSIASNPS 587 +PT V +S VS T SPSS + + + PT++TS++S S Sbjct: 92 SPTAVSSSPVSMTASASSPSSTSTSSSSSSRLASSPTVITSVSSASS 138
>P69527:AMPO_RAT Aminopeptidase O - Rattus norvegicus (Rat)| Length = 816 Score = 30.8 bits (68), Expect = 9.7 Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%) Frame = -3 Query: 730 KELTPDRHFHLVEWVLQNK-LSVQLIYCFQQDFHI 629 ++L+PD+ L+EW+L+ K LS Q ++ QQ +H+ Sbjct: 701 EKLSPDQIVLLLEWLLEQKTLSPQTLHRLQQTYHL 735 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 170,104,782 Number of extensions: 3691735 Number of successful extensions: 8613 Number of sequences better than 10.0: 21 Number of HSP's gapped: 8605 Number of HSP's successfully gapped: 25 Length of query: 351 Length of database: 100,686,439 Length adjustment: 114 Effective length of query: 237 Effective length of database: 69,416,809 Effective search space: 16451783733 Effective search space used: 16451783733 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
