ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf74p10 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os04g28040:12004.t02504:unspliced-genomic expressed protein| Length = 6174 Score = 45.1 bits (92), Expect(2) = 2e-08 Identities = 17/27 (62%), Positives = 23/27 (85%) Frame = +2 / +2 Query: 758 LTRSRVRALSISTPESLKMRRTRSGRV 838 LTR + ++ S+STPESLK+RRTRSG + Sbjct: 5156 LTRGKAKSSSVSTPESLKLRRTRSGTI 5236 Score = 34.5 bits (69), Expect(2) = 2e-08 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +2 / +2 Query: 827 SGRVIVPQLDSTRSWVVYDRVSKE 898 +GRV+VP LD +VYDRVS+E Sbjct: 5306 AGRVVVPTLDPGCQRIVYDRVSQE 5377 Score = 37.3 bits (75), Expect(2) = 1e-04 Identities = 17/24 (70%), Positives = 18/24 (75%) Frame = -3 / -1 Query: 831 PDLVLLILRDSGVEIDNARTLERV 760 PDLVLL LRDSGVE D+ L RV Sbjct: 5229 PDLVLLSLRDSGVETDDDLALPRV 5158 Score = 29.5 bits (58), Expect(2) = 1e-04 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -2 / -3 Query: 898 FFTNPVIDNPTSC*IQLRYYHST 830 F TN VID+P + IQ YH+T Sbjct: 5377 FLTNSVIDDPLASRIQCGNYHAT 5309 Score = 25.8 bits (50), Expect(2) = 9.9 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +3 / +3 Query: 828 QVE**YLNWIQQEVGLSMTGLVKK 899 QV *+ +WI G SMT LVKK Sbjct: 5307 QVAW*FPHWILDAKGSSMTELVKK 5378 Score = 23.5 bits (45), Expect(2) = 9.9 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 / +3 Query: 780 HYLFPHPSLSK*EGPDQVE 836 H+ F H +LS *E DQV+ Sbjct: 5178 HHQFQHLNLSN*EELDQVQ 5234
>LOC_Os04g28050:12004.t02505:unspliced-genomic expressed protein| Length = 4539 Score = 32.7 bits (65), Expect(2) = 0.008 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 / +1 Query: 827 SGRVIVPQLDSTRSWVVYDRVSKEI 901 SGR+IVP+LD ++YD VS I Sbjct: 3337 SGRLIVPRLDPGSQKIIYDMVSNNI 3411 Score = 27.6 bits (54), Expect(2) = 0.008 Identities = 10/17 (58%), Positives = 16/17 (94%) Frame = +2 / +1 Query: 761 TRSRVRALSISTPESLK 811 T+++ +ALS++TPESLK Sbjct: 3187 TKAKGKALSLATPESLK 3237 Score = 26.7 bits (52), Expect(2) = 5.7 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -1 / -3 Query: 902 IFLY*PCHRQPNFLLNPIEVLSLDL 828 ++ Y*PCH + L+P LS+DL Sbjct: 3412 LYYY*PCHI*SSGFLDPTVELSVDL 3338 Score = 23.5 bits (45), Expect(2) = 5.7 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 / -2 Query: 822 VLLILRDSGVEIDNARTLERV 760 ++L+LRDSGV D A L V Sbjct: 3248 LVLLLRDSGVARDKALPLALV 3186
>LOC_Os08g41780:12008.t03907:unspliced-genomic gastric triacylglycerol lipase precursor, putative, expressed| Length = 5224 Score = 35.0 bits (70), Expect = 1.8 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = -3 / +1 Query: 1314 LHHKISIFTAHLRDKLCTALSRTNLTFHICDNNNLQCG 1201 ++H +++FTA +K+C+ L + +HI D+NN G Sbjct: 3250 INHTLNLFTAC*SEKICSNLYYKVILYHILDSNNFFFG 3363
>LOC_Os03g47240:12003.t04085:unspliced-genomic expressed protein| Length = 3440 Score = 27.2 bits (53), Expect(2) = 7.7 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -1 / +2 Query: 740 QRNIAISTDDQNLG*HSF 687 +RNIA STD++N+ H F Sbjct: 3293 ERNIATSTDERNIPNHHF 3346 Score = 22.6 bits (43), Expect(2) = 7.7 Identities = 8/17 (47%), Positives = 11/17 (64%) Frame = -2 / +2 Query: 610 SNHFGSIVRSLSLHFCK 560 ++HFG + LS FCK Sbjct: 3335 NHHFGHTIVILSFVFCK 3385
>LOC_Os12g04290:12012.t00318:unspliced-genomic PP2A regulatory subunit TAP46, putative, expressed| Length = 4083 Score = 32.7 bits (65), Expect = 8.6 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -1 / +3 Query: 1601 WTCMQVSLTCQLAKLAPCHQRTHVIMLTRTESYI 1500 W +S C A CH THV++ T T+ +I Sbjct: 717 WCIFVMSFLCPFQLGALCHHNTHVLITTVTQEFI 818
>LOC_Os02g25650:12002.t02260:unspliced-genomic hypothetical protein| Length = 3516 Score = 32.7 bits (65), Expect = 8.6 Identities = 15/61 (24%), Positives = 25/61 (40%) Frame = +3 / +2 Query: 507 KLLPCDHEVTGSSPGNSLLQKCRERLRTIDPKWLDPSPDPAQAGVTCTGLPFFCYLTQLT 686 +L + V S+ +Q + L +P+W+ P+ + G G FCY Q Sbjct: 38 RLWQLERSVIPSNRHRGAIQTVHQNLH*TEPRWVQPNHGLGRPGPNLAGGLLFCYSPQTC 217 Query: 687 K 689 K Sbjct: 218 K 220
>LOC_Os01g19750:12001.t01765:unspliced-genomic acidic endochitinase precursor, putative, expressed| Length = 1239 Score = 32.7 bits (65), Expect = 8.6 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = +2 / -2 Query: 1550 RGLTWLTGKLARLACKSRR*RLEFRHGSSKAPAPSGG 1660 RG G+ R C+SRR R R +S PAP+GG Sbjct: 617 RGRRSSGGRRRRPRCRSRRRRAPRRRAASCRPAPTGG 507
>LOC_Os10g30550:12010.t02387:unspliced-genomic phosphoglycerate kinase, chloroplast precursor, putative, expressed| Length = 8882 Score = 27.2 bits (53), Expect(2) = 9.6 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +1 / +3 Query: 1342 PPPPR*LDLSADGMRGLTLP 1401 PPPPR D +A G RG P Sbjct: 75 PPPPRRGDTAAGGRRGAYAP 134 Score = 22.1 bits (42), Expect(2) = 9.6 Identities = 8/10 (80%), Positives = 8/10 (80%) Frame = +1 / +1 Query: 1327 SRIWTPPPPR 1356 SR TPPPPR Sbjct: 16 SRSRTPPPPR 45 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 807,227,823 Number of extensions: 13686100 Number of successful extensions: 45155 Number of sequences better than 10.0: 8 Length of query: 616 Length of database: 55,613,886 Length adjustment: 51 Effective length of query: 565 Effective length of database: 52,743,708 Effective search space: 29800195020 Effective search space used: 29800195020 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
