>ref|NM_001051261.1| Oryza sativa (japonica cultivar-group) Os01g0835600 (Os01g0835600)
mRNA, partial cds
Length = 2189
Score = 180 bits (91), Expect = 9e-42
Identities = 256/311 (82%)
Strand = Plus / Plus
Query: 394 actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
||||||||||| ||||||| ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 429 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 488
Query: 454 ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
|||||||||||| | ||||| | ||||||||| | | ||||| ||| | |||
Sbjct: 489 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 548
Query: 514 gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
|||||||||||||||||||||| ||||||||||||||||| || || | ||||| |||
Sbjct: 549 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 608
Query: 574 aagtgttttgcagggaaagttgtcaagtatgacagtgaaagcaattggtacagtgttgtg 633
||| ||||| ||||||||| | ||||||||| |||||||| || ||||||||||||||
Sbjct: 609 aagcattttgtagggaaagtggacaagtatgatagtgaaagtaactggtacagtgttgtc 668
Query: 634 tatgatgatggagaccaggaagatcttgaatggcttgaactggaggagatcctgctacca 693
||| | |||||||||||||| ||||| || ||| ||| ||||||||||| |||| |||
Sbjct: 669 tatcaagatggagaccaggaggatctcgagtggaaggaagtggaggagatcatgctgcca 728
Query: 694 ttggacataac 704
|||||||||||
Sbjct: 729 ttggacataac 739
Score = 75.8 bits (38), Expect = 4e-10
Identities = 119/144 (82%), Gaps = 4/144 (2%)
Strand = Plus / Plus
Query: 1300 cactgttacaatacagatatgtctaagtattccag--tctatgcatgctggtgacactag 1357
||||||| ||||||| |||| | ||| ||||||| |||||||| | ||||||||||||
Sbjct: 1258 cactgttccaatacatatatctgtaaacattccagaatctatgcacgatggtgacactag 1317
Query: 1358 ctttcaa--tgtactttgtacaacccagcgtacaacaaaacttgtaaagctatatttact 1415
||||||| | || ||||||||| ||| |||| | |||||||||||| |||||||| ||
Sbjct: 1318 ctttcaacatatattttgtacaatccatcgtagagcaaaacttgtaagactatatttgct 1377
Query: 1416 attcgagtgctatcatatttcttt 1439
|| | | ||||||| |||||||||
Sbjct: 1378 atcccaatgctatcgtatttcttt 1401
Score = 52.0 bits (26), Expect = 0.006
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1183 tagtgttcataagcgcaatgcagagactgtcagggcagaaaaactg 1228
|||||||| || ||||||||| |||| ||||||||||||||||||
Sbjct: 1130 tagtgttcttatacgcaatgcacagacagtcagggcagaaaaactg 1175
Score = 44.1 bits (22), Expect = 1.4
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 887 aatgcagagactgtcagggcagaaaaactg 916
|||||| |||| ||||||||||||||||||
Sbjct: 1146 aatgcacagacagtcagggcagaaaaactg 1175
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
Length = 43261740
Score = 180 bits (91), Expect = 9e-42
Identities = 256/311 (82%)
Strand = Plus / Minus
Query: 394 actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
||||||||||| ||||||| ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 35811744 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 35811685
Query: 454 ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
|||||||||||| | ||||| | ||||||||| | | ||||| ||| | |||
Sbjct: 35811684 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 35811625
Query: 514 gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
|||||||||||||||||||||| ||||||||||||||||| || || | ||||| |||
Sbjct: 35811624 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 35811565
Query: 574 aagtgttttgcagggaaagttgtcaagtatgacagtgaaagcaattggtacagtgttgtg 633
||| ||||| ||||||||| | ||||||||| |||||||| || ||||||||||||||
Sbjct: 35811564 aagcattttgtagggaaagtggacaagtatgatagtgaaagtaactggtacagtgttgtc 35811505
Query: 634 tatgatgatggagaccaggaagatcttgaatggcttgaactggaggagatcctgctacca 693
||| | |||||||||||||| ||||| || ||| ||| ||||||||||| |||| |||
Sbjct: 35811504 tatcaagatggagaccaggaggatctcgagtggaaggaagtggaggagatcatgctgcca 35811445
Query: 694 ttggacataac 704
|||||||||||
Sbjct: 35811444 ttggacataac 35811434
Score = 75.8 bits (38), Expect = 4e-10
Identities = 119/144 (82%), Gaps = 4/144 (2%)
Strand = Plus / Minus
Query: 1300 cactgttacaatacagatatgtctaagtattccag--tctatgcatgctggtgacactag 1357
||||||| ||||||| |||| | ||| ||||||| |||||||| | ||||||||||||
Sbjct: 35810915 cactgttccaatacatatatctgtaaacattccagaatctatgcacgatggtgacactag 35810856
Query: 1358 ctttcaa--tgtactttgtacaacccagcgtacaacaaaacttgtaaagctatatttact 1415
||||||| | || ||||||||| ||| |||| | |||||||||||| |||||||| ||
Sbjct: 35810855 ctttcaacatatattttgtacaatccatcgtagagcaaaacttgtaagactatatttgct 35810796
Query: 1416 attcgagtgctatcatatttcttt 1439
|| | | ||||||| |||||||||
Sbjct: 35810795 atcccaatgctatcgtatttcttt 35810772
Score = 52.0 bits (26), Expect = 0.006
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 1183 tagtgttcataagcgcaatgcagagactgtcagggcagaaaaactg 1228
|||||||| || ||||||||| |||| ||||||||||||||||||
Sbjct: 35811043 tagtgttcttatacgcaatgcacagacagtcagggcagaaaaactg 35810998
Score = 44.1 bits (22), Expect = 1.4
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 887 aatgcagagactgtcagggcagaaaaactg 916
|||||| |||| ||||||||||||||||||
Sbjct: 35811027 aatgcacagacagtcagggcagaaaaactg 35810998
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0506B12
Length = 170759
Score = 180 bits (91), Expect = 9e-42
Identities = 256/311 (82%)
Strand = Plus / Minus
Query: 394 actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
||||||||||| ||||||| ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 76202 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 76143
Query: 454 ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
|||||||||||| | ||||| | ||||||||| | | ||||| ||| | |||
Sbjct: 76142 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 76083
Query: 514 gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
|||||||||||||||||||||| ||||||||||||||||| || || | ||||| |||
Sbjct: 76082 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 76023
Query: 574 aagtgttttgcagggaaagttgtcaagtatgacagtgaaagcaattggtacagtgttgtg 633
||| ||||| ||||||||| | ||||||||| |||||||| || ||||||||||||||
Sbjct: 76022 aagcattttgtagggaaagtggacaagtatgatagtgaaagtaactggtacagtgttgtc 75963
Query: 634 tatgatgatggagaccaggaagatcttgaatggcttgaactggaggagatcctgctacca 693
||| | |||||||||||||| ||||| || ||| ||| ||||||||||| |||| |||
Sbjct: 75962 tatcaagatggagaccaggaggatctcgagtggaaggaagtggaggagatcatgctgcca 75903
Query: 694 ttggacataac 704
|||||||||||
Sbjct: 75902 ttggacataac 75892
Score = 75.8 bits (38), Expect = 4e-10
Identities = 119/144 (82%), Gaps = 4/144 (2%)
Strand = Plus / Minus
Query: 1300 cactgttacaatacagatatgtctaagtattccag--tctatgcatgctggtgacactag 1357
||||||| ||||||| |||| | ||| ||||||| |||||||| | ||||||||||||
Sbjct: 75373 cactgttccaatacatatatctgtaaacattccagaatctatgcacgatggtgacactag 75314
Query: 1358 ctttcaa--tgtactttgtacaacccagcgtacaacaaaacttgtaaagctatatttact 1415
||||||| | || ||||||||| ||| |||| | |||||||||||| |||||||| ||
Sbjct: 75313 ctttcaacatatattttgtacaatccatcgtagagcaaaacttgtaagactatatttgct 75254
Query: 1416 attcgagtgctatcatatttcttt 1439
|| | | ||||||| |||||||||
Sbjct: 75253 atcccaatgctatcgtatttcttt 75230
Score = 52.0 bits (26), Expect = 0.006
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 1183 tagtgttcataagcgcaatgcagagactgtcagggcagaaaaactg 1228
|||||||| || ||||||||| |||| ||||||||||||||||||
Sbjct: 75501 tagtgttcttatacgcaatgcacagacagtcagggcagaaaaactg 75456
Score = 44.1 bits (22), Expect = 1.4
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 887 aatgcagagactgtcagggcagaaaaactg 916
|||||| |||| ||||||||||||||||||
Sbjct: 75485 aatgcacagacagtcagggcagaaaaactg 75456
>dbj|AK121745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E04, full
insert sequence
Length = 1450
Score = 180 bits (91), Expect = 9e-42
Identities = 256/311 (82%)
Strand = Plus / Plus
Query: 394 actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
||||||||||| ||||||| ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 432 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 491
Query: 454 ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
|||||||||||| | ||||| | ||||||||| | | ||||| ||| | |||
Sbjct: 492 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 551
Query: 514 gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
|||||||||||||||||||||| ||||||||||||||||| || || | ||||| |||
Sbjct: 552 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 611
Query: 574 aagtgttttgcagggaaagttgtcaagtatgacagtgaaagcaattggtacagtgttgtg 633
||| ||||| ||||||||| | ||||||||| |||||||| || ||||||||||||||
Sbjct: 612 aagcattttgtagggaaagtggacaagtatgatagtgaaagtaactggtacagtgttgtc 671
Query: 634 tatgatgatggagaccaggaagatcttgaatggcttgaactggaggagatcctgctacca 693
||| | |||||||||||||| ||||| || ||| ||| ||||||||||| |||| |||
Sbjct: 672 tatcaagatggagaccaggaggatctcgagtggaaggaagtggaggagatcatgctgcca 731
Query: 694 ttggacataac 704
|||||||||||
Sbjct: 732 ttggacataac 742
Score = 75.8 bits (38), Expect = 4e-10
Identities = 119/144 (82%), Gaps = 4/144 (2%)
Strand = Plus / Plus
Query: 1300 cactgttacaatacagatatgtctaagtattccag--tctatgcatgctggtgacactag 1357
||||||| ||||||| |||| | ||| ||||||| |||||||| | ||||||||||||
Sbjct: 1261 cactgttccaatacatatatctgtaaacattccagaatctatgcacgatggtgacactag 1320
Query: 1358 ctttcaa--tgtactttgtacaacccagcgtacaacaaaacttgtaaagctatatttact 1415
||||||| | || ||||||||| ||| |||| | |||||||||||| |||||||| ||
Sbjct: 1321 ctttcaacatatattttgtacaatccatcgtagagcaaaacttgtaagactatatttgct 1380
Query: 1416 attcgagtgctatcatatttcttt 1439
|| | | ||||||| |||||||||
Sbjct: 1381 atcccaatgctatcgtatttcttt 1404
Score = 52.0 bits (26), Expect = 0.006
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1183 tagtgttcataagcgcaatgcagagactgtcagggcagaaaaactg 1228
|||||||| || ||||||||| |||| ||||||||||||||||||
Sbjct: 1133 tagtgttcttatacgcaatgcacagacagtcagggcagaaaaactg 1178
Score = 44.1 bits (22), Expect = 1.4
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 887 aatgcagagactgtcagggcagaaaaactg 916
|||||| |||| ||||||||||||||||||
Sbjct: 1149 aatgcacagacagtcagggcagaaaaactg 1178
>dbj|AK064796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000C20, full
insert sequence
Length = 2688
Score = 180 bits (91), Expect = 9e-42
Identities = 256/311 (82%)
Strand = Plus / Plus
Query: 394 actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
||||||||||| ||||||| ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 1711 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 1770
Query: 454 ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
|||||||||||| | ||||| | ||||||||| | | ||||| ||| | |||
Sbjct: 1771 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 1830
Query: 514 gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
|||||||||||||||||||||| ||||||||||||||||| || || | ||||| |||
Sbjct: 1831 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 1890
Query: 574 aagtgttttgcagggaaagttgtcaagtatgacagtgaaagcaattggtacagtgttgtg 633
||| ||||| ||||||||| | ||||||||| |||||||| || ||||||||||||||
Sbjct: 1891 aagcattttgtagggaaagtggacaagtatgatagtgaaagtaactggtacagtgttgtc 1950
Query: 634 tatgatgatggagaccaggaagatcttgaatggcttgaactggaggagatcctgctacca 693
||| | |||||||||||||| ||||| || ||| ||| ||||||||||| |||| |||
Sbjct: 1951 tatcaagatggagaccaggaggatctcgagtggaaggaagtggaggagatcatgctgcca 2010
Query: 694 ttggacataac 704
|||||||||||
Sbjct: 2011 ttggacataac 2021
Score = 75.8 bits (38), Expect = 4e-10
Identities = 119/144 (82%), Gaps = 4/144 (2%)
Strand = Plus / Plus
Query: 1300 cactgttacaatacagatatgtctaagtattccag--tctatgcatgctggtgacactag 1357
||||||| ||||||| |||| | ||| ||||||| |||||||| | ||||||||||||
Sbjct: 2540 cactgttccaatacatatatctgtaaacattccagaatctatgcacgatggtgacactag 2599
Query: 1358 ctttcaa--tgtactttgtacaacccagcgtacaacaaaacttgtaaagctatatttact 1415
||||||| | || ||||||||| ||| |||| | |||||||||||| |||||||| ||
Sbjct: 2600 ctttcaacatatattttgtacaatccatcgtagagcaaaacttgtaagactatatttgct 2659
Query: 1416 attcgagtgctatcatatttcttt 1439
|| | | ||||||| |||||||||
Sbjct: 2660 atcccaatgctatcgtatttcttt 2683
Score = 52.0 bits (26), Expect = 0.006
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1183 tagtgttcataagcgcaatgcagagactgtcagggcagaaaaactg 1228
|||||||| || ||||||||| |||| ||||||||||||||||||
Sbjct: 2412 tagtgttcttatacgcaatgcacagacagtcagggcagaaaaactg 2457
Score = 44.1 bits (22), Expect = 1.4
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 887 aatgcagagactgtcagggcagaaaaactg 916
|||||| |||| ||||||||||||||||||
Sbjct: 2428 aatgcacagacagtcagggcagaaaaactg 2457
>dbj|AK064222.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G02, full
insert sequence
Length = 2188
Score = 180 bits (91), Expect = 9e-42
Identities = 256/311 (82%)
Strand = Plus / Plus
Query: 394 actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
||||||||||| ||||||| ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 428 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 487
Query: 454 ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
|||||||||||| | ||||| | ||||||||| | | ||||| ||| | |||
Sbjct: 488 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 547
Query: 514 gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
|||||||||||||||||||||| ||||||||||||||||| || || | ||||| |||
Sbjct: 548 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 607
Query: 574 aagtgttttgcagggaaagttgtcaagtatgacagtgaaagcaattggtacagtgttgtg 633
||| ||||| ||||||||| | ||||||||| |||||||| || ||||||||||||||
Sbjct: 608 aagcattttgtagggaaagtggacaagtatgatagtgaaagtaactggtacagtgttgtc 667
Query: 634 tatgatgatggagaccaggaagatcttgaatggcttgaactggaggagatcctgctacca 693
||| | |||||||||||||| ||||| || ||| ||| ||||||||||| |||| |||
Sbjct: 668 tatcaagatggagaccaggaggatctcgagtggaaggaagtggaggagatcatgctgcca 727
Query: 694 ttggacataac 704
|||||||||||
Sbjct: 728 ttggacataac 738
Score = 75.8 bits (38), Expect = 4e-10
Identities = 119/144 (82%), Gaps = 4/144 (2%)
Strand = Plus / Plus
Query: 1300 cactgttacaatacagatatgtctaagtattccag--tctatgcatgctggtgacactag 1357
||||||| ||||||| |||| | ||| ||||||| |||||||| | ||||||||||||
Sbjct: 1257 cactgttccaatacatatatctgtaaacattccagaatctatgcacgatggtgacactag 1316
Query: 1358 ctttcaa--tgtactttgtacaacccagcgtacaacaaaacttgtaaagctatatttact 1415
||||||| | || ||||||||| ||| |||| | |||||||||||| |||||||| ||
Sbjct: 1317 ctttcaacatatattttgtacaatccatcgtagagcaaaacttgtaagactatatttgct 1376
Query: 1416 attcgagtgctatcatatttcttt 1439
|| | | ||||||| |||||||||
Sbjct: 1377 atcccaatgctatcgtatttcttt 1400
Score = 52.0 bits (26), Expect = 0.006
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1183 tagtgttcataagcgcaatgcagagactgtcagggcagaaaaactg 1228
|||||||| || ||||||||| |||| ||||||||||||||||||
Sbjct: 1129 tagtgttcttatacgcaatgcacagacagtcagggcagaaaaactg 1174
Score = 44.1 bits (22), Expect = 1.4
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 887 aatgcagagactgtcagggcagaaaaactg 916
|||||| |||| ||||||||||||||||||
Sbjct: 1145 aatgcacagacagtcagggcagaaaaactg 1174
>dbj|AK061927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C05, full
insert sequence
Length = 1394
Score = 180 bits (91), Expect = 9e-42
Identities = 256/311 (82%)
Strand = Plus / Plus
Query: 394 actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
||||||||||| ||||||| ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 420 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 479
Query: 454 ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
|||||||||||| | ||||| | ||||||||| | | ||||| ||| | |||
Sbjct: 480 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 539
Query: 514 gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
|||||||||||||||||||||| ||||||||||||||||| || || | ||||| |||
Sbjct: 540 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 599
Query: 574 aagtgttttgcagggaaagttgtcaagtatgacagtgaaagcaattggtacagtgttgtg 633
||| ||||| ||||||||| | ||||||||| |||||||| || ||||||||||||||
Sbjct: 600 aagcattttgtagggaaagtggacaagtatgatagtgaaagtaactggtacagtgttgtc 659
Query: 634 tatgatgatggagaccaggaagatcttgaatggcttgaactggaggagatcctgctacca 693
||| | |||||||||||||| ||||| || ||| ||| ||||||||||| |||| |||
Sbjct: 660 tatcaagatggagaccaggaggatctcgagtggaaggaagtggaggagatcatgctgcca 719
Query: 694 ttggacataac 704
|||||||||||
Sbjct: 720 ttggacataac 730
Score = 75.8 bits (38), Expect = 4e-10
Identities = 119/144 (82%), Gaps = 4/144 (2%)
Strand = Plus / Plus
Query: 1300 cactgttacaatacagatatgtctaagtattccag--tctatgcatgctggtgacactag 1357
||||||| ||||||| |||| | ||| ||||||| |||||||| | ||||||||||||
Sbjct: 1249 cactgttccaatacatatatctgtaaacattccagaatctatgcacgatggtgacactag 1308
Query: 1358 ctttcaa--tgtactttgtacaacccagcgtacaacaaaacttgtaaagctatatttact 1415
||||||| | || ||||||||| ||| |||| | |||||||||||| |||||||| ||
Sbjct: 1309 ctttcaacatatattttgtacaatccatcgtagagcaaaacttgtaagactatatttgct 1368
Query: 1416 attcgagtgctatcatatttcttt 1439
|| | | ||||||| |||||||||
Sbjct: 1369 atcccaatgctatcgtatttcttt 1392
Score = 52.0 bits (26), Expect = 0.006
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1183 tagtgttcataagcgcaatgcagagactgtcagggcagaaaaactg 1228
|||||||| || ||||||||| |||| ||||||||||||||||||
Sbjct: 1121 tagtgttcttatacgcaatgcacagacagtcagggcagaaaaactg 1166
Score = 44.1 bits (22), Expect = 1.4
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 887 aatgcagagactgtcagggcagaaaaactg 916
|||||| |||| ||||||||||||||||||
Sbjct: 1137 aatgcacagacagtcagggcagaaaaactg 1166
>dbj|AK119267.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-A07, full
insert sequence
Length = 3154
Score = 75.8 bits (38), Expect = 4e-10
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 607 agtgaaagcaattggtacagtgttgtgtatgatgatggagaccaggaagatcttgaatgg 666
|||||||| || |||||||||||||| || | |||||||||||||| ||||| || |||
Sbjct: 4 agtgaaagtaactggtacagtgttgtccatcaagatggagaccaggaggatctcgagtgg 63
Query: 667 cttgaactggaggagatcctgctaccattggacataac 704
||| ||||||||||| |||| ||||||||||||||
Sbjct: 64 aaggaagtggaggagatcatgctgccattggacataac 101
Score = 75.8 bits (38), Expect = 4e-10
Identities = 119/144 (82%), Gaps = 4/144 (2%)
Strand = Plus / Plus
Query: 1300 cactgttacaatacagatatgtctaagtattccag--tctatgcatgctggtgacactag 1357
||||||| ||||||| |||| | ||| ||||||| |||||||| | ||||||||||||
Sbjct: 620 cactgttccaatacatatatctgtaaacattccagaatctatgcacgatggtgacactag 679
Query: 1358 ctttcaa--tgtactttgtacaacccagcgtacaacaaaacttgtaaagctatatttact 1415
||||||| | || ||||||||| ||| |||| | |||||||||||| |||||||| ||
Sbjct: 680 ctttcaacatatattttgtacaatccatcgtagagcaaaacttgtaagactatatttgct 739
Query: 1416 attcgagtgctatcatatttcttt 1439
|| | | ||||||| |||||||||
Sbjct: 740 atcccaatgctatcgtatttcttt 763
Score = 52.0 bits (26), Expect = 0.006
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1183 tagtgttcataagcgcaatgcagagactgtcagggcagaaaaactg 1228
|||||||| || ||||||||| |||| ||||||||||||||||||
Sbjct: 492 tagtgttcttatacgcaatgcacagacagtcagggcagaaaaactg 537
Score = 44.1 bits (22), Expect = 1.4
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 887 aatgcagagactgtcagggcagaaaaactg 916
|||||| |||| ||||||||||||||||||
Sbjct: 508 aatgcacagacagtcagggcagaaaaactg 537
>emb|AL031727.43|HS1056L3 Human DNA sequence from clone RP5-1056L3 on chromosome 1p35.1-36.13
Contains a novel gene, the gene for a novel protein
(LOC374960), a ribosomal protein S14 (RPS14) pseudogene,
the NBL1 gene for neuroblastoma suppression of
tumorigenicity 1, the HTR6 gene for 5-hydroxytryptamine
(serotonin) receptor 6, the 3' end of the gene for a novel
protein (LOC255104) (FLJ45636) and two CpG islands,
complete sequence
Length = 163848
Score = 42.1 bits (21), Expect = 5.5
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 736 ttcaaacatcagaatcctgac 756
|||||||||||||||||||||
Sbjct: 82858 ttcaaacatcagaatcctgac 82878
>dbj|AP003160.1| Homo sapiens genomic DNA, chromosome 1p36 clone:956M3, complete
sequence
Length = 130080
Score = 42.1 bits (21), Expect = 5.5
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 736 ttcaaacatcagaatcctgac 756
|||||||||||||||||||||
Sbjct: 44235 ttcaaacatcagaatcctgac 44215
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Dec 3, 2006 5:45 PM
Number of letters in database: 18,610,659,111
Number of sequences in database: 4,638,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 243,513,791
Number of extensions: 13529143
Number of successful extensions: 285652
Number of sequences better than 10.0: 30
Number of HSP's gapped: 285636
Number of HSP's successfully gapped: 63
Length of query: 1457
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1434
Effective length of database: 18,503,978,556
Effective search space: 26534705249304
Effective search space used: 26534705249304
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)