ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf34e03 |
|---|---|
| Clone Library Name | barley_pub |
>P03181:YHL1_EBV Hypothetical protein BHLF1 - Epstein-Barr virus (strain B95-8)| (HHV-4) (Human herpesvirus 4) Length = 660 Score = 32.0 bits (71), Expect = 2.3 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = -3 Query: 277 ARTRTSGQRPCCPLRWRS*RASR-WTKNSSCRSG-PAPWAPARTGTPSARRPSSPG 116 A RT + P CP R+ R W + S + G P P A R P+ RP++PG Sbjct: 260 AAQRTHRRPPGCPRSARNPGCPRTWRRRSGAQRGHPPPGAGQRPSGPTGGRPAAPG 315 Score = 32.0 bits (71), Expect = 2.3 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = -3 Query: 277 ARTRTSGQRPCCPLRWRS*RASR-WTKNSSCRSG-PAPWAPARTGTPSARRPSSPG 116 A RT + P CP R+ R W + S + G P P A R P+ RP++PG Sbjct: 385 AAQRTHRRPPGCPRSARNPGCPRTWRRRSGAQRGHPPPGAGQRPSGPTGGRPAAPG 440 Score = 32.0 bits (71), Expect = 2.3 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = -3 Query: 277 ARTRTSGQRPCCPLRWRS*RASR-WTKNSSCRSG-PAPWAPARTGTPSARRPSSPG 116 A RT + P CP R+ R W + S + G P P A R P+ RP++PG Sbjct: 510 AAQRTHRRPPGCPRSARNPGCPRTWRRRSGAQRGHPPPGAGQRPSGPTGGRPAAPG 565 Score = 31.6 bits (70), Expect = 3.0 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = -3 Query: 262 SGQRPCCPLRWRS*RASRWTKNSSCRSGPAPWAPARTGTPSARRPSSPG 116 S + P CP WR ++ + R P P A R P+ RP++PG Sbjct: 149 SARNPGCPRTWRR-------RSGAQRGHPPPGAGQRPSGPTGGRPAAPG 190
>Q2NL18:HEYL_BOVIN Hairy/enhancer-of-split related with YRPW motif-like protein - Bos| taurus (Bovine) Length = 328 Score = 31.2 bits (69), Expect = 4.0 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 16/74 (21%) Frame = -3 Query: 256 QRPCCPLRWR-S*RASRWTKNSSCRSGPAPWAPARTGTPS-----ARRPSSPG------- 116 +RP PL S RA+R + + P+P +P G+P+ A RPSSPG Sbjct: 252 ERPAAPLPAAPSGRATRGSHMAPLLRSPSPVSPGMVGSPAYMAVPAPRPSSPGLAGRPAG 311 Query: 115 ---CRHPWLSALAE 83 CR W+S + E Sbjct: 312 AMLCR-SWVSEITE 324
>P34391:COL91_CAEEL Putative cuticle collagen 91 - Caenorhabditis elegans| Length = 278 Score = 31.2 bits (69), Expect = 4.0 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +3 Query: 9 QVAADGQSLII-PFFPQGLTAGKLLPSAKADSHGWRQPGDDGRRAEGVPVRAGAQG 173 Q ADGQ P P+G P A QPG +G+R+ G P AGA G Sbjct: 156 QPGADGQGGAPGPAGPEGPAGDAGAPGAPGAPGNDGQPGQNGQRSTGTPGAAGAPG 211
>O49741:GATA2_ARATH GATA transcription factor 2 - Arabidopsis thaliana (Mouse-ear| cress) Length = 264 Score = 31.2 bits (69), Expect = 4.0 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = +1 Query: 202 WSNDSLFSYASAGGSRAVVHSCVCAPTTHPGSFRCKHHRQSAAH 333 +SN+ +FS +S+GGS A S P +P SF H SA H Sbjct: 20 FSNEDIFSASSSGGSTAATSSSSFPPPQNP-SFHHHHLPSSADH 62
>P08169:MPRI_BOVIN Cation-independent mannose-6-phosphate receptor precursor - Bos| taurus (Bovine) Length = 2499 Score = 30.4 bits (67), Expect = 6.8 Identities = 16/57 (28%), Positives = 23/57 (40%) Frame = -3 Query: 178 PAPWAPARTGTPSARRPSSPGCRHPWLSALAEGKSLPAVKP*GKKGMIKLCPSAATC 8 P W P GT A P C + W + + L + G G+ + PS+A C Sbjct: 38 PPGWVPGAAGTQGAEFPEL--CSYTWEAVDTKNNMLYKINICGNMGVAQCGPSSAVC 92
>Q3SWY1:ARI5A_BOVIN AT-rich interactive domain-containing protein 5A - Bos taurus| (Bovine) Length = 592 Score = 30.4 bits (67), Expect = 6.8 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Frame = -3 Query: 253 RPCCPLRWRS*RASRWTKNSSCRSGPAPWAPARTGTPSARRPSSPGCRHPWLSALAE--- 83 RP + S + S + K +C P PA + P PSSPG H +LAE Sbjct: 395 RPSAFHKGSSRKGSLYPKPKACWVSPMTKVPAESPVPLPTFPSSPGLGHK--RSLAEDSS 452 Query: 82 ---GKSLPAVKP*GKKGMIKLC 26 K L AV P K+ + C Sbjct: 453 VHGSKKLRAVSPFLKEANAQEC 474
>Q8C0L0:TXD13_MOUSE Thioredoxin domain-containing protein 13 precursor - Mus musculus| (Mouse) Length = 335 Score = 30.4 bits (67), Expect = 6.8 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = +1 Query: 253 VVHSCVCAPTTHPGSFRCKHHRQSAAHLGAAGQAQVQPTAEADADARRNEVHGDMSTADD 432 V+ C C P S RC+ + + A G Q+Q E D+ NE S DD Sbjct: 205 VISECFCVPLPRASSERCEQEQSTGE---AQGAEQLQDAEEEKDDS--NEEENKDSLVDD 259 Query: 433 EK 438 E+ Sbjct: 260 EE 261
>P08519:APOA_HUMAN Apolipoprotein(a) precursor - Homo sapiens (Human)| Length = 4548 Score = 30.4 bits (67), Expect = 6.8 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 8/88 (9%) Frame = +1 Query: 1 EFCRLQQTGKV*SSPSSLKA*RPASSCPQPRQTAMDGDSPVMTD---GERRAYRYVQAPK 171 E+C L + SS + P S P + A SPV+ D G+ R+YR + + Sbjct: 3966 EYCNLTRCPVTESSVLTTPTVAPVPSTEAPSEQAPPEKSPVVQDCYHGDGRSYRGISSTT 4025 Query: 172 V-----QGLSGMKNSWSNDSLFSYASAG 240 V Q S M W + +Y +AG Sbjct: 4026 VTGRTCQSWSSMIPHWHQRTPENYPNAG 4053
>Q9C992:KCS7_ARATH 3-ketoacyl-CoA synthase 7 - Arabidopsis thaliana (Mouse-ear cress)| Length = 460 Score = 30.0 bits (66), Expect = 8.9 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 18/101 (17%) Frame = -2 Query: 665 YFFWPYTTIY---YSCITARKMKRSSLRNI----------ENEYVHHRKKVLEMTGISLP 525 YFF P IY +SC R+ + N + E + ++K+LE +GIS Sbjct: 39 YFFKPRCIIYLIDFSCYQPPDFLRAPVSNFIEHLTISGVFDQESLDLQQKILERSGISDD 98 Query: 524 RTTPATCNQA---ARYVFTHEEAHP--RGPLHDAFSSSAVD 417 + PAT ++ A EE H + D FS +D Sbjct: 99 ASVPATVHEIPPNASISAAREETHEILFAIVQDLFSKHEID 139
>Q96JM3:K1802_HUMAN Zinc finger protein KIAA1802 - Homo sapiens (Human)| Length = 812 Score = 30.0 bits (66), Expect = 8.9 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 11/54 (20%) Frame = -3 Query: 184 SGPAPWAP-----------ARTGTPSARRPSSPGCRHPWLSALAEGKSLPAVKP 56 + P PW P ART +P R+PS PW K PAV P Sbjct: 252 ASPEPWGPSPAASPESRKSARTTSPEPRKPSPSESPEPW-------KPFPAVSP 298
>P27637:BUD14_YEAST Bud site selection protein 14 - Saccharomyces cerevisiae (Baker's| yeast) Length = 707 Score = 30.0 bits (66), Expect = 8.9 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 24/142 (16%) Frame = +1 Query: 91 RQTAMDGDSPVMTDGERRAYRYVQAPKVQGLSGMKNSWSNDSL-----FSYASA-----G 240 R + PV +D + + +AP++ +GM S S +SL FS +S+ Sbjct: 495 RYVGQEKSEPVDSDYDTDLKKVFEAPRMPFANGMAKSDSQNSLSTIGEFSPSSSEWTNES 554 Query: 241 GSRAVVHSCVCAPTTHP--------------GSFRCKHHRQSAAHLGAAGQAQVQPTAEA 378 S +V P++ + R KH Q A LG++G Q Sbjct: 555 PSTPIVEESSSIPSSRAIRTFTYIMQNRKLRDNKRGKHRGQIQASLGSSGGMPNQ----T 610 Query: 379 DADARRNEVHGDMSTADDEKAS 444 DA+ + E+ ST ++EK S Sbjct: 611 DAEQPKEELEKHHSTPEEEKQS 632
>P59310:ARGC_SHIFL N-acetyl-gamma-glutamyl-phosphate reductase - Shigella flexneri| Length = 334 Score = 30.0 bits (66), Expect = 8.9 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Frame = +1 Query: 196 NSWSNDSLFSYASAGGSRAVVHSCVCAPTTHP-GSFRCKHHRQSAAHLGA 342 N W + S S G +A + + C + P G F +H + A HLGA Sbjct: 175 NQWPVINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEIATHLGA 224
>P11446:ARGC_ECOLI N-acetyl-gamma-glutamyl-phosphate reductase - Escherichia coli| Length = 334 Score = 30.0 bits (66), Expect = 8.9 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Frame = +1 Query: 196 NSWSNDSLFSYASAGGSRAVVHSCVCAPTTHP-GSFRCKHHRQSAAHLGA 342 N W + S S G +A + + C + P G F +H + A HLGA Sbjct: 175 NQWPVINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEIATHLGA 224
>P59306:ARGC_ECOL6 N-acetyl-gamma-glutamyl-phosphate reductase - Escherichia coli O6| Length = 334 Score = 30.0 bits (66), Expect = 8.9 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Frame = +1 Query: 196 NSWSNDSLFSYASAGGSRAVVHSCVCAPTTHP-GSFRCKHHRQSAAHLGA 342 N W + S S G +A + + C + P G F +H + A HLGA Sbjct: 175 NQWPVINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEIATHLGA 224
>Q8X732:ARGC_ECO57 N-acetyl-gamma-glutamyl-phosphate reductase - Escherichia coli| O157:H7 Length = 334 Score = 30.0 bits (66), Expect = 8.9 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Frame = +1 Query: 196 NSWSNDSLFSYASAGGSRAVVHSCVCAPTTHP-GSFRCKHHRQSAAHLGA 342 N W + S S G +A + + C + P G F +H + A HLGA Sbjct: 175 NQWPVINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEIATHLGA 224 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 114,782,852 Number of extensions: 2442279 Number of successful extensions: 8127 Number of sequences better than 10.0: 15 Number of HSP's gapped: 8117 Number of HSP's successfully gapped: 18 Length of query: 235 Length of database: 100,686,439 Length adjustment: 110 Effective length of query: 125 Effective length of database: 70,513,989 Effective search space: 8814248625 Effective search space used: 8814248625 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
