ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl44d03 |
|---|---|
| Clone Library Name | barley_pub |
>KCNH8_HUMAN (Q96L42) Potassium voltage-gated channel subfamily H member 8| (Voltage-gated potassium channel subunit Kv12.1) (Ether-a-go-go-like potassium channel 3) (ELK channel 3) (ELK3) (ELK1) (hElk1) Length = 1107 Score = 32.0 bits (71), Expect = 0.38 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -2 Query: 364 CEANI*ASLWCLGPPTVGTRNQPTGSEQHPPNDA 263 C +NI + +W + P +VG+ Q TG+ + P D+ Sbjct: 950 CSSNITSDIWSVDPSSVGSSPQRTGAHEQNPADS 983
>UHRF2_HUMAN (Q96PU4) Ubiquitin-like PHD and RING finger domain-containing| protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95/ICBP90-like RING finger protein) (Np95-like RING finger protein) (Nuclear zinc finger Length = 802 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 19 KNTAPNKAVGAISTDSNITNLHHLLRL 99 KN A NK +GA S D +TN++ L L Sbjct: 513 KNLAGNKRIGAPSADQTLTNMNRALAL 539
>UHRF2_MOUSE (Q7TMI3) Ubiquitin-like PHD and RING finger domain-containing| protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95-like ring finger protein) (Nuclear zinc finger protein Np97) (NIRF) Length = 803 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 19 KNTAPNKAVGAISTDSNITNLHHLLRL 99 KN A NK +GA S D +TN++ L L Sbjct: 514 KNLAGNKRIGAPSADQTLTNMNRALAL 540
>DHE3_THEMA (P96110) Glutamate dehydrogenase (EC 1.4.1.3) (GDH)| Length = 415 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +3 Query: 57 YRLKHNQFTSPSKVGVRYH 113 YR++HN P+K G+RYH Sbjct: 56 YRVQHNVARGPAKGGIRYH 74
>HMDH1_ORYSA (P48019) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC| 1.1.1.34) (HMG-CoA reductase 1) Length = 509 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +3 Query: 261 RASLGGCCSLPVGWFLVPT-VGGP 329 +A LG CC +PVG+ +P V GP Sbjct: 149 QAILGQCCEMPVGYVQLPVGVAGP 172
>DHE2_STAAW (Q7A1B9) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)| (NAD-GDH) Length = 414 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 57 YRLKHNQFTSPSKVGVRYH 113 YR +HN P+K GVR+H Sbjct: 58 YRAQHNDAVGPTKGGVRFH 76
>DHE2_STAAS (Q6GAW8) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)| (NAD-GDH) Length = 414 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 57 YRLKHNQFTSPSKVGVRYH 113 YR +HN P+K GVR+H Sbjct: 58 YRAQHNDAVGPTKGGVRFH 76
>DHE2_STAAR (Q6GID0) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)| (NAD-GDH) Length = 414 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 57 YRLKHNQFTSPSKVGVRYH 113 YR +HN P+K GVR+H Sbjct: 58 YRAQHNDAVGPTKGGVRFH 76
>DHE2_STAAN (Q7A6H8) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)| (NAD-GDH) Length = 414 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 57 YRLKHNQFTSPSKVGVRYH 113 YR +HN P+K GVR+H Sbjct: 58 YRAQHNDAVGPTKGGVRFH 76
>DHE2_STAAM (Q99VD0) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)| (NAD-GDH) Length = 414 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 57 YRLKHNQFTSPSKVGVRYH 113 YR +HN P+K GVR+H Sbjct: 58 YRAQHNDAVGPTKGGVRFH 76
>DHE2_STAAC (Q5HHC7) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)| (NAD-GDH) Length = 414 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 57 YRLKHNQFTSPSKVGVRYH 113 YR +HN P+K GVR+H Sbjct: 58 YRAQHNDAVGPTKGGVRFH 76
>HMDH1_ARATH (P14891) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC| 1.1.1.34) (HMG-CoA reductase 1) (HMGR1) Length = 592 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = +3 Query: 270 LGGCCSLPVGWFLVPT-VGGP 329 LG CC +PVG+ +P + GP Sbjct: 229 LGQCCEMPVGYIQIPVGIAGP 249
>TNPA_STRFR (P20189) Transposase for transposon Tn4556| Length = 892 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +2 Query: 242 IITELITCIIRRMLLASSGLVPGTDCWRAKT 334 I +L+T RR++LA+ L PGT W+A T Sbjct: 329 IDADLLTGSWRRLVLAAPHLEPGTVDWKAYT 359
>SYI_METMP (Q6LX78) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1034 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Frame = +2 Query: 254 LITCIIRRMLLASSGLVPGT--DCWRAKTP 337 +I +I + LL +SG V T CWR KTP Sbjct: 382 VIETLISKNLLVNSGKVKHTYPHCWRCKTP 411
>SERC3_MOUSE (Q9QZI9) Serine incorporator 3 (Tumor differentially expressed| protein 1) (Membrane protein TMS-1) (Axotomy-induced glycoprotein 1) (Axotomy-induced glyco/Golgi protein 1) (AIGP-1) Length = 472 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -2 Query: 169 WVRVQRKF*EVALELAKWQ*YLTPTLEGDVNWLCLSLYLWRL 44 W KF +V+ +KW L + +WLCL LYLW L Sbjct: 425 WYSPDAKFQKVS---SKW---LAVWFKMGSSWLCLLLYLWTL 460
>HMDH_MAIZE (O24594) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC| 1.1.1.34) (HMG-CoA reductase) Length = 579 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = +3 Query: 270 LGGCCSLPVGWFLVPT-VGGP 329 LG CC LPVG+ +P V GP Sbjct: 211 LGQCCELPVGYVQLPVGVAGP 231
>DHE2_BACSU (P39633) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)| (NAD-GDH) Length = 424 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 57 YRLKHNQFTSPSKVGVRYH 113 YR +HN P+K GVR+H Sbjct: 68 YRSQHNDAVGPTKGGVRFH 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,368,353 Number of Sequences: 219361 Number of extensions: 1221134 Number of successful extensions: 2746 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2746 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
