>CCA_BORPE (Q7U358) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 364

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 300 GRSALICRHSSENSNLGSITRFVARAANTTELHTVVVACSEASSPP 437
           GR AL+CRH+ E   LG   R      +   L  + V    AS+ P
Sbjct: 241 GRYALLCRHTPERDALGRRLRAPVECMDQARLLPLAVDALAASATP 286

>CCA_BORBR (Q7U391) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 364

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 300 GRSALICRHSSENSNLGSITRFVARAANTTELHTVVVACSEASSPP 437
           GR AL+CRH+ E   LG   R      +   L  + V    AS+ P
Sbjct: 241 GRYALLCRHTPERDALGRRLRAPVECMDQARLLPLAVDALAASATP 286

>PSTA_DICDI (P11976) Prestalk protein precursor|
          Length = 1046

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 97  NSCSSCSKPIPCDGSNAC 44
           NS  SC  PI CD +NAC
Sbjct: 255 NSTGSCHTPITCDDNNAC 272

>UVRC_LACLA (Q9CH98) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 668

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -2

Query: 359 GYASQIAVFRRMATDQGGSSPI----ENDSHQPYEVLWEWPNASIPLTEFGRR*YYLT 198
           G A Q+ + +++  + G S P+    +ND HQ  E+L+  P   +PL+   +  + LT
Sbjct: 511 GGAGQVNITKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLDVVPLSRQSQEFFLLT 568

>PRIM_STRCO (Q9S1N4) DNA primase (EC 2.7.7.-)|
          Length = 641

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 416 ASHNYSVEFSGVGGSSDEPGYASQIAVFRRMATDQGGSSP 297
           A H  +V+ +G+ G  D      +IA   R A D+GG  P
Sbjct: 412 AQHEVAVQLAGMLGILDTQFVVKRIAQLARWARDRGGKGP 451


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,697,411
Number of Sequences: 219361
Number of extensions: 1292587
Number of successful extensions: 3382
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3380
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)