ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast79h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, par... 773 0.0
2ref|XM_475910.1| Oryza sativa (japonica cultivar-group), predic... 54 3e-04
3gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
4gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
6dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
7ref|NM_192379.1| Oryza sativa (japonica cultivar-group), predic... 52 0.001
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
9dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
10dbj|AK102737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
11ref|NM_192393.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
12dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
13ref|XM_470493.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.3
15gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 42 1.3
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
17dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
18dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
19gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosom... 40 5.2
20emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chr... 40 5.2
21gb|AF403051.1|AF403051 Pseudorabies virus strain Fa glycoprotein... 40 5.2
22tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 40 5.2
23gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, comple... 40 5.2
24gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.2
25gb|AF158090.1|AF158090 Pseudorabies virus glycoprotein C (gC) ge... 40 5.2
26emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15,... 40 5.2
27gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 5.2
28gb|M12778.1|SH1GGIII Pseudorabies virus (PRV) glycoprotein gIII ... 40 5.2
29dbj|D49437.1|SH1GGIII3 Pseudorabies virus DNA for glycoprotein g... 40 5.2
30dbj|D49436.1|SH1GGIII2 Pseudorabies virus DNA for glycoprotein g... 40 5.2
31dbj|D49435.1|SH1GGIII1 Pseudorabies virus DNA for glycoprotein g... 40 5.2 
>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence
          Length = 779

 Score =  773 bits (390), Expect = 0.0
 Identities = 390/390 (100%)
 Strand = Plus / Minus

                                                                       
Query: 3   cgaggagaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttggaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 cgaggagaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttggaa 717

                                                                       
Query: 63  acattcacttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgtaagc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 acattcacttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgtaagc 657

                                                                       
Query: 123 cgttatttagaacctcggtcttggcaacgagcacagcgccgtgaatcacatcaacgccca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cgttatttagaacctcggtcttggcaacgagcacagcgccgtgaatcacatcaacgccca 597

                                                                       
Query: 183 ctctcctcctagtgaatggccgatgcgagtaacttaacttagatgtgcttgaagtcctgg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctctcctcctagtgaatggccgatgcgagtaacttaacttagatgtgcttgaagtcctgg 537

                                                                       
Query: 243 agcgtccatcgcccatctccccccttgaccatgaacttgtgcttcggcacccaccagctc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agcgtccatcgcccatctccccccttgaccatgaacttgtgcttcggcacccaccagctc 477

                                                                       
Query: 303 gccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtca 417

                                         
Query: 363 cggtccacctcgagcttgaaccctccggca 392
           ||||||||||||||||||||||||||||||
Sbjct: 416 cggtccacctcgagcttgaaccctccggca 387
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>ref|XM_475910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1224

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 102/127 (80%)
 Strand = Plus / Minus

                                                                        
Query: 265  ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324
            ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 1180 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 1121

                                                                        
Query: 325  cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384
             |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 1120 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 1061

                   
Query: 385  ctccggc 391
            | |||||
Sbjct: 1060 cgccggc 1054
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>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 102/127 (80%)
 Strand = Plus / Plus

                                                                          
Query: 265    ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324
              ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 163111 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 163170

                                                                          
Query: 325    cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384
               |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 163171 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 163230

                     
Query: 385    ctccggc 391
              | |||||
Sbjct: 163231 cgccggc 163237
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>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08,
             complete sequence
          Length = 119500

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 102/127 (80%)
 Strand = Plus / Plus

                                                                         
Query: 265   ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324
             ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 13793 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 13852

                                                                         
Query: 325   cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384
              |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 13853 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 13912

                    
Query: 385   ctccggc 391
             | |||||
Sbjct: 13913 cgccggc 13919
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 102/127 (80%)
 Strand = Plus / Plus

                                                                            
Query: 265      ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324
                ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 28378869 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 28378928

                                                                            
Query: 325      cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384
                 |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 28378929 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 28378988

                       
Query: 385      ctccggc 391
                | |||||
Sbjct: 28378989 cgccggc 28378995
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>dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E01, full
            insert sequence
          Length = 1526

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 102/127 (80%)
 Strand = Plus / Minus

                                                                        
Query: 265  ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324
            ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 1264 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 1205

                                                                        
Query: 325  cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384
             |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 1204 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 1145

                   
Query: 385  ctccggc 391
            | |||||
Sbjct: 1144 cgccggc 1138
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>ref|NM_192379.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1263

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 361
            |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 1170 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 1111

                      
Query: 362  acggtccacc 371
            ||||||||||
Sbjct: 1110 acggtccacc 1101
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                            
Query: 302      cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 361
                |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 26317752 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 26317693

                          
Query: 362      acggtccacc 371
                ||||||||||
Sbjct: 26317692 acggtccacc 26317683



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                             
Query: 341      cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccc 385
                ||||||||||||||| | ||| ||||| ||||| |||||||||||
Sbjct: 26377149 cttgttcaccagcgccacgtcccggtcgacctccagcttgaaccc 26377193
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>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1159_D09
          Length = 147770

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                          
Query: 302    cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 361
              |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 130433 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 130374

                        
Query: 362    acggtccacc 371
              ||||||||||
Sbjct: 130373 acggtccacc 130364
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>dbj|AK102737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C14, full
            insert sequence
          Length = 1577

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 361
            |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 1302 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 1243

                      
Query: 362  acggtccacc 371
            ||||||||||
Sbjct: 1242 acggtccacc 1233
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>ref|NM_192393.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1458

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 341  cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccc 385
            ||||||||||||||| | ||| ||||| ||||| |||||||||||
Sbjct: 1320 cttgttcaccagcgccacgtcccggtcgacctccagcttgaaccc 1276
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>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032K15
          Length = 126195

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 341   cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccc 385
             ||||||||||||||| | ||| ||||| ||||| |||||||||||
Sbjct: 51014 cttgttcaccagcgccacgtcccggtcgacctccagcttgaaccc 51058
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>ref|XM_470493.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1724

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 248 ccatcgcccatctcccccctt 268
           |||||||||||||||||||||
Sbjct: 176 ccatcgcccatctcccccctt 196
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 248      ccatcgcccatctcccccctt 268
                |||||||||||||||||||||
Sbjct: 35925005 ccatcgcccatctcccccctt 35925025
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>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 248   ccatcgcccatctcccccctt 268
             |||||||||||||||||||||
Sbjct: 36120 ccatcgcccatctcccccctt 36100
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 248      ccatcgcccatctcccccctt 268
                |||||||||||||||||||||
Sbjct: 36015135 ccatcgcccatctcccccctt 36015155
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>dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115J18, full
           insert sequence
          Length = 1749

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 248 ccatcgcccatctcccccctt 268
           |||||||||||||||||||||
Sbjct: 196 ccatcgcccatctcccccctt 216
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>dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G02, full
           insert sequence
          Length = 705

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 341 cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccc 385
           ||||||||||||| | | ||| ||||| ||||| |||||||||||
Sbjct: 409 cttgttcaccagctccacgtcccggtcgacctccagcttgaaccc 365
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>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete
             sequence
          Length = 219818

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    attttgcataaaatgggaaa 92
             ||||||||||||||||||||
Sbjct: 73416 attttgcataaaatgggaaa 73435
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>emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chromosome 13, complete
             sequence
          Length = 96045

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ttcacttattttgcataaaa 85
             ||||||||||||||||||||
Sbjct: 29584 ttcacttattttgcataaaa 29603
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>gb|AF403051.1|AF403051 Pseudorabies virus strain Fa glycoprotein C gene, complete cds
          Length = 1562

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 caccgggtgctcgtccgcga 327
           ||||||||||||||||||||
Sbjct: 916 caccgggtgctcgtccgcga 897
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   caccgggtgctcgtccgcga 327
             ||||||||||||||||||||
Sbjct: 54862 caccgggtgctcgtccgcga 54843
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>gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, complete sequence
          Length = 109568

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    taaaatgggaaatatactag 100
             ||||||||||||||||||||
Sbjct: 81268 taaaatgggaaatatactag 81249
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 309     accgggtgctcgtccgcgag 328
               ||||||||||||||||||||
Sbjct: 4606525 accgggtgctcgtccgcgag 4606506
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>gb|AF158090.1|AF158090 Pseudorabies virus glycoprotein C (gC) gene, complete cds
          Length = 1755

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  caccgggtgctcgtccgcga 327
            ||||||||||||||||||||
Sbjct: 1059 caccgggtgctcgtccgcga 1040
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>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence
          Length = 149807

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     gaaacattcacttattttgc 79
              ||||||||||||||||||||
Sbjct: 101727 gaaacattcacttattttgc 101708
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 193     agtgaatggccgatgcgagt 212
               ||||||||||||||||||||
Sbjct: 6301611 agtgaatggccgatgcgagt 6301630
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>gb|M12778.1|SH1GGIII Pseudorabies virus (PRV) glycoprotein gIII mRNA, complete cds
          Length = 1722

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  caccgggtgctcgtccgcga 327
            ||||||||||||||||||||
Sbjct: 1029 caccgggtgctcgtccgcga 1010
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>dbj|D49437.1|SH1GGIII3 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1584

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 caccgggtgctcgtccgcga 327
           ||||||||||||||||||||
Sbjct: 919 caccgggtgctcgtccgcga 900
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>dbj|D49436.1|SH1GGIII2 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1579

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 caccgggtgctcgtccgcga 327
           ||||||||||||||||||||
Sbjct: 916 caccgggtgctcgtccgcga 897
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>dbj|D49435.1|SH1GGIII1 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1584

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 caccgggtgctcgtccgcga 327
           ||||||||||||||||||||
Sbjct: 919 caccgggtgctcgtccgcga 900


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,689,149
Number of Sequences: 3902068
Number of extensions: 2689149
Number of successful extensions: 51553
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51320
Number of HSP's gapped (non-prelim): 231
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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