ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast79e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ROBO1_MOUSE (O89026) Roundabout homolog 1 precursor 28 8.7
2ROBO1_RAT (O55005) Roundabout homolog 1 precursor 28 8.7
3ROBO1_HUMAN (Q9Y6N7) Roundabout homolog 1 precursor (H-Robo-1) (... 28 8.7

>ROBO1_MOUSE (O89026) Roundabout homolog 1 precursor|
          Length = 1612

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 72  KKNGQLAVDKVYRLKINKGWLMSTHTRKS 158
           KK+G    DK  R+ I  G LM T+TRKS
Sbjct: 166 KKDGSPLDDKDERITIRGGKLMITYTRKS 194



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>ROBO1_RAT (O55005) Roundabout homolog 1 precursor|
          Length = 1651

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 72  KKNGQLAVDKVYRLKINKGWLMSTHTRKS 158
           KK+G    DK  R+ I  G LM T+TRKS
Sbjct: 205 KKDGSPLDDKDERITIRGGKLMITYTRKS 233



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>ROBO1_HUMAN (Q9Y6N7) Roundabout homolog 1 precursor (H-Robo-1) (Deleted in U|
           twenty twenty)
          Length = 1651

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 72  KKNGQLAVDKVYRLKINKGWLMSTHTRKS 158
           KK+G    DK  R+ I  G LM T+TRKS
Sbjct: 205 KKDGSPLDDKDERITIRGGKLMITYTRKS 233


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,953,743
Number of Sequences: 219361
Number of extensions: 423000
Number of successful extensions: 994
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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