>gb|BT008959.1| Triticum aestivum clone wdk1c.pk012.i11:fis, full insert mRNA
            sequence
          Length = 1300

 Score =  121 bits (61), Expect = 8e-25
 Identities = 156/185 (84%), Gaps = 11/185 (5%)
 Strand = Plus / Minus

                                                                        
Query: 1    aggatcagcacaaattccagtacgaatgatggcaacagagtcaggaactacaaaggatcc 60
            ||||||||  |||||||||  |||||||| |||||||||||||||||||||||||| |||
Sbjct: 1202 aggatcagtgcaaattccaacacgaatgacggcaacagagtcaggaactacaaagggtcc 1143

                                                                        
Query: 61   acgaataatgnnnnnnnnntggtcag-ttggcagtcgacaaagtttacaggctaaaaatt 119
            ||||||||||         ||||||| | ||||||||||| |||||||| |||| |    
Sbjct: 1142 acgaataatg---aagcaatggtcagctgggcagtcgacagagtttacatgctaga---- 1090

                                                                        
Query: 120  aacaaaggctggttgatgtcaacacacacacg-aaaatctcagggtttttcttaaaacat 178
            || ||||||||||||||||||||||||||||| ||||||||| |  ||||||||||||||
Sbjct: 1089 aagaaaggctggttgatgtcaacacacacacgaaaaatctcaag--ttttcttaaaacat 1032

                 
Query: 179  gatga 183
            |||||
Sbjct: 1031 gatga 1027

>gb|AC133959.4| Mus musculus BAC clone RP23-377P18 from 15, complete sequence
          Length = 143812

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 35    acagagtcaggaactacaaagg 56
             ||||||||||||||||||||||
Sbjct: 48037 acagagtcaggaactacaaagg 48016

>gb|AY456027.1| Cochliobolus heterostrophus putative response regulator receiver
           SSK1p (SSK1) gene, partial cds
          Length = 1239

 Score = 42.1 bits (21), Expect = 0.60
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 96  gacaaagtttacaggctaaaa 116
           |||||||||||||||||||||
Sbjct: 915 gacaaagtttacaggctaaaa 895

>emb|AL929395.8| Mouse DNA sequence from clone RP23-263P13 on chromosome 2, complete
             sequence
          Length = 121993

 Score = 42.1 bits (21), Expect = 0.60
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 141   acacacacacgaaaatctcag 161
             |||||||||||||||||||||
Sbjct: 53405 acacacacacgaaaatctcag 53385

>dbj|AP002520.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-705O3, complete
            sequence
          Length = 66000

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 165  ttttcttaaaacatgatgaa 184
            ||||||||||||||||||||
Sbjct: 5746 ttttcttaaaacatgatgaa 5765

>ref|NM_015315.3| Homo sapiens La ribonucleoprotein domain family, member 1 (LARP1),
            transcript variant 1, mRNA
          Length = 6644

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 106  acaggctaaaaattaacaa 124
            |||||||||||||||||||
Sbjct: 5062 acaggctaaaaattaacaa 5044

>ref|NM_033551.2| Homo sapiens La ribonucleoprotein domain family, member 1 (LARP1),
            transcript variant 2, mRNA
          Length = 7280

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 106  acaggctaaaaattaacaa 124
            |||||||||||||||||||
Sbjct: 5698 acaggctaaaaattaacaa 5680

>ref|XM_959992.1| Neurospora crassa OR74A hypothetical protein (NCU02491.1) partial
           mRNA
          Length = 750

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 167 ttcttaaaacatgatgaag 185
           |||||||||||||||||||
Sbjct: 697 ttcttaaaacatgatgaag 715

>ref|XM_331689.1| Neurospora crassa OR74A hypothetical protein (NCU02491.1) partial
           mRNA
          Length = 750

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 167 ttcttaaaacatgatgaag 185
           |||||||||||||||||||
Sbjct: 697 ttcttaaaacatgatgaag 715

>ref|XM_448546.1| Candida glabrata CBS138, CAGL0K07480g partial mRNA
          Length = 1704

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  aatgatggcaacagagtca 43
           |||||||||||||||||||
Sbjct: 939 aatgatggcaacagagtca 921

>emb|Z77667.1|CEM04B2 Caenorhabditis elegans Cosmid M04B2, complete sequence
          Length = 43374

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 138   tcaacacacacacgaaaat 156
             |||||||||||||||||||
Sbjct: 33846 tcaacacacacacgaaaat 33864

>gb|AF508802.1| Homo sapiens bac54tar, complete sequence
          Length = 97274

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 106   acaggctaaaaattaacaa 124
             |||||||||||||||||||
Sbjct: 77626 acaggctaaaaattaacaa 77608

>emb|AL049597.29|HSJ612B15 Human DNA sequence from clone RP4-612B15 on chromosome 1p22.2-31.1
             Contains the 3' end of a novel gene, the SH3GLB1 gene for
             SH3-domain GRB2-like endophilin B1, a ribosomal protein
             L17 (RPL17) pseudogene and a CpG island, complete sequence
          Length = 127820

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 141   acacacacacgaaaatctc 159
             |||||||||||||||||||
Sbjct: 26526 acacacacacgaaaatctc 26508

>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence
          Length = 1302002

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     aatgatggcaacagagtca 43
              |||||||||||||||||||
Sbjct: 740398 aatgatggcaacagagtca 740416

>emb|BX842631.1| Neurospora crassa DNA linkage group I BAC contig B1O14
          Length = 119219

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 167   ttcttaaaacatgatgaag 185
             |||||||||||||||||||
Sbjct: 32674 ttcttaaaacatgatgaag 32692

>gb|AC112169.2| Homo sapiens chromosome 5 clone CTD-2016H11, complete sequence
          Length = 168329

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 106   acaggctaaaaattaacaa 124
             |||||||||||||||||||
Sbjct: 88023 acaggctaaaaattaacaa 88041

>gb|AC105001.3| Homo sapiens chromosome 8, clone CTD-2135J3, complete sequence
          Length = 157442

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 141   acacacacacgaaaatctc 159
             |||||||||||||||||||
Sbjct: 54830 acacacacacgaaaatctc 54848

>gb|BC038220.2| Homo sapiens La ribonucleoprotein domain family, member 1, mRNA (cDNA
            clone IMAGE:4099180)
          Length = 2790

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 106  acaggctaaaaattaacaa 124
            |||||||||||||||||||
Sbjct: 1157 acaggctaaaaattaacaa 1139

>gb|BC010144.2| Homo sapiens La ribonucleoprotein domain family, member 1, mRNA (cDNA
            clone IMAGE:4304831)
          Length = 2543

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 106  acaggctaaaaattaacaa 124
            |||||||||||||||||||
Sbjct: 1001 acaggctaaaaattaacaa 983

>gb|BC015573.1| Homo sapiens La ribonucleoprotein domain family, member 1, mRNA
           (cDNA clone IMAGE:3837786), with apparent retained
           intron
          Length = 2062

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 106 acaggctaaaaattaacaa 124
           |||||||||||||||||||
Sbjct: 467 acaggctaaaaattaacaa 449

>gb|BC003063.2| Homo sapiens La ribonucleoprotein domain family, member 1, mRNA
           (cDNA clone IMAGE:3506392)
          Length = 1983

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 106 acaggctaaaaattaacaa 124
           |||||||||||||||||||
Sbjct: 416 acaggctaaaaattaacaa 398

>gb|AC158529.2| Mus musculus BAC clone RP23-263H3 from chromosome 13, complete sequence
          Length = 172769

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 39     agtcaggaactacaaaggatccacgaa 65
              ||||| ||||||||||||| |||||||
Sbjct: 130592 agtcaagaactacaaaggacccacgaa 130618

>gb|AC099860.13| Mus musculus chromosome 1, clone RP23-5C23, complete sequence
          Length = 230538

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 147    acacgaaaatctcagggtt 165
              |||||||||||||||||||
Sbjct: 168696 acacgaaaatctcagggtt 168678

>gb|AC083939.4| Homo sapiens BAC clone RP11-308C20 from 2, complete sequence
          Length = 116121

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 119   taacaaaggctggttgatgtcaa 141
             ||||| |||||||||||||||||
Sbjct: 44158 taacagaggctggttgatgtcaa 44180

>gb|AC016738.6| Homo sapiens BAC clone RP11-426K3 from 2, complete sequence
          Length = 183289

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 166    tttcttaaaacatgatgaa 184
              |||||||||||||||||||
Sbjct: 179379 tttcttaaaacatgatgaa 179361

>gb|AC092181.9| Homo sapiens 3 BAC RP11-735O9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 183168

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 165   ttttcttaaaacatgatga 183
             |||||||||||||||||||
Sbjct: 69621 ttttcttaaaacatgatga 69639

>gb|AC068466.4| Homo sapiens chromosome 8, clone RP11-370A22, complete sequence
          Length = 179597

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 156   tctcagggtttttcttaaa 174
             |||||||||||||||||||
Sbjct: 88071 tctcagggtttttcttaaa 88089

>gb|AC016240.23| Homo sapiens chromosome 8, clone RP11-27N21, complete sequence
          Length = 167578

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 166    tttcttaaaacatgatgaa 184
              |||||||||||||||||||
Sbjct: 137260 tttcttaaaacatgatgaa 137278

>emb|BX248129.5| Zebrafish DNA sequence from clone CH211-196M16 in linkage group 17,
             complete sequence
          Length = 217707

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 128   ctggttgatgtcaacacacacac 150
             |||| ||||||||||||||||||
Sbjct: 76113 ctggctgatgtcaacacacacac 76135

>emb|Z23725.1|HS234YE5 H. sapiens (D8S520) DNA segment containing (CA) repeat; clone
           AFM234ye5; single read
          Length = 335

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 141 acacacacacgaaaatctc 159
           |||||||||||||||||||
Sbjct: 84  acacacacacgaaaatctc 102

>emb|CT030195.12| Mouse DNA sequence from clone RP23-191J8 on chromosome 13, complete
             sequence
          Length = 219800

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 39    agtcaggaactacaaaggatccacgaa 65
             ||||| ||||||||||||| |||||||
Sbjct: 82168 agtcaagaactacaaaggacccacgaa 82194

>emb|AL772315.4| Mouse DNA sequence from clone RP23-54A13 on chromosome 4, complete
              sequence
          Length = 200266

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 97     acaaagtttacaggctaaa 115
              |||||||||||||||||||
Sbjct: 158898 acaaagtttacaggctaaa 158916

>emb|AL732634.13| Mouse DNA sequence from clone RP23-322G19 on chromosome 4, complete
             sequence
          Length = 203176

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    acaaagtttacaggctaaa 115
             |||||||||||||||||||
Sbjct: 28338 acaaagtttacaggctaaa 28356

>dbj|AP003501.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-664I21, complete
             sequence
          Length = 186971

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 96    gacaaagtttacaggctaaaaat 118
             ||||||||||||||||| |||||
Sbjct: 97193 gacaaagtttacaggctcaaaat 97171


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,438,913
Number of Sequences: 3902068
Number of extensions: 2438913
Number of successful extensions: 160673
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 160598
Number of HSP's gapped (non-prelim): 74
length of query: 190
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 168
effective length of database: 17,147,199,772
effective search space: 2880729561696
effective search space used: 2880729561696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)