ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast79c01 |
|---|---|
| Clone Library Name | barley_pub |
>NAC48_ORYSA (Q7F2L3) NAC domain-containing protein 48 (ONAC048)| Length = 303 Score = 94.0 bits (232), Expect = 1e-19 Identities = 54/80 (67%), Positives = 59/80 (73%), Gaps = 8/80 (10%) Frame = -3 Query: 427 SSCSEQVLSPDFPGERGGGEVQSQPKISEWERSFASGGDPVNPAAGSILEPHG------- 269 SSCSEQVLSP+F EVQSQPKISEWER+FA+ G P+NPAA SIL+P G Sbjct: 231 SSCSEQVLSPEF-----ACEVQSQPKISEWERTFATVG-PINPAA-SILDPAGSGGLGGL 283 Query: 268 -GFGGDPLLQDILMYWGKPF 212 G G DPLLQDILMYWGKPF Sbjct: 284 GGGGSDPLLQDILMYWGKPF 303
>NAC2_ARATH (Q39013) NAC domain-containing protein 2 (ANAC002)| Length = 289 Score = 40.8 bits (94), Expect = 0.001 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 7/79 (8%) Frame = -3 Query: 427 SSCSEQVLSPDFPGERGGGEVQSQPKISEWERSFASGGDPV----NPAAGSILEPHGGFG 260 SSCSEQV+SP+F EVQS+PK +W + + N ++ GG G Sbjct: 216 SSCSEQVVSPEFT-----SEVQSEPKWKDWSAVSNDNNNTLDFGFNYIDATVDNAFGGGG 270 Query: 259 GDPL---LQDILMYWGKPF 212 LQD+ MY KP+ Sbjct: 271 SSNQMFPLQDMFMYMQKPY 289
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 33.9 bits (76), Expect = 0.17 Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 7/96 (7%) Frame = +3 Query: 144 PTQTPRIGVLAPIDRSIGFFAA*NGLPQYMRMSWRSGSPP-----KPPWGSRMEP-AAGF 305 PT P +G P G + G W G+ P P GS M P AAGF Sbjct: 1487 PTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGF 1546 Query: 306 TGSPP-EANERSHSLILGWLCTSPPPRSPGKSGDST 410 + S +A+ S W SP P SPG G S+ Sbjct: 1547 SPSAASDASGFSPGYSPAW---SPTPGSPGSPGPSS 1579
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 33.9 bits (76), Expect = 0.17 Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 7/96 (7%) Frame = +3 Query: 144 PTQTPRIGVLAPIDRSIGFFAA*NGLPQYMRMSWRSGSPP-----KPPWGSRMEP-AAGF 305 PT P +G P G + G W G+ P P GS M P AAGF Sbjct: 1487 PTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGF 1546 Query: 306 TGSPP-EANERSHSLILGWLCTSPPPRSPGKSGDST 410 + S +A+ S W SP P SPG G S+ Sbjct: 1547 SPSAASDASGFSPGYSPAW---SPTPGSPGSPGPSS 1579
>GLPK_MYCTU (O69664) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase) (Glycerokinase) (GK) Length = 517 Score = 32.7 bits (73), Expect = 0.37 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = +3 Query: 135 RPRPTQTPRIGVLAPIDRSIGFFAA*NGLPQYMRMSWRSGSPPKPPWGSRMEPAAGFTG 311 RP +T +GV ++GF+AA P +R +WR P W E AAG+ G Sbjct: 449 RPVVAETTALGVAYAAGLAVGFWAA----PSDLRANWREDKRWTPTWDDD-ERAAGYAG 502
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 32.7 bits (73), Expect = 0.37 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Frame = +3 Query: 213 NGLPQYMRMSWRSGSPPKP--PWGSRMEPAAGFTGSPPEANERSHSLILG---WLCTSPP 377 NG Q + + +R+ PP+P GSR P +GF E R G W TSPP Sbjct: 8 NGGEQTLLVPFRAHRPPRPLLQLGSRASPVSGFQLGVVEGEWRVVQPAYGQARWT-TSPP 66 Query: 378 PRSP 389 P SP Sbjct: 67 PASP 70
>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (hPER) Length = 1290 Score = 31.6 bits (70), Expect = 0.83 Identities = 29/97 (29%), Positives = 37/97 (38%) Frame = +3 Query: 138 PRPTQTPRIGVLAPIDRSIGFFAA*NGLPQYMRMSWRSGSPPKPPWGSRMEPAAGFTGSP 317 P PT P AP+ + LP Y+ +P P+G+ PA G P Sbjct: 900 PAPTSVPPAAFPAPLVTPMVALV----LPNYL-----FPTPSSYPYGALQTPAEG----P 946 Query: 318 PEANERSHSLILGWLCTSPPPRSPGKSGDSTCSEQLE 428 P S S L L SPP R +S CS L+ Sbjct: 947 PTPASHSPSPSLPALPPSPPHRPDSPLFNSRCSSPLQ 983
>VG22_ICHV1 (Q00105) Hypothetical gene 22 protein| Length = 1403 Score = 31.2 bits (69), Expect = 1.1 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Frame = -3 Query: 385 ERGGGEVQSQPKISEWERSFASGGDPVNPAAGSILE----PHGGFGGDP 251 +R GGE +S + E E D P+AG LE P GG G DP Sbjct: 1185 DRQGGETESGGEEEESEEESEESEDEDPPSAGGPLELIGVPAGGIGADP 1233
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 30.8 bits (68), Expect = 1.4 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Frame = +3 Query: 219 LPQYMRMSWRSGSPPKPPWGSR-----MEPAAGFTGSPPEANERSHSLILGWLCTSPPPR 383 +P R S S +PP PP SR + P++ P +R+ SL ++PP Sbjct: 294 VPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSL----SSSTPPLP 349 Query: 384 SPGKSG 401 SPG+SG Sbjct: 350 SPGRSG 355
>HCN4_MOUSE (O70507) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Brain cyclic nucleotide gated channel 3) (BCNG-3) Length = 1186 Score = 30.4 bits (67), Expect = 1.9 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Frame = +3 Query: 144 PTQTPRIGVLAPIDRSIGFFAA*NGLPQYMRMSWRSG-SPPKPPWGSRMEPAAGFTGSPP 320 P+ TP P F A +G + + R G SPP G P F +PP Sbjct: 976 PSSTPET---PPRPERPSFMAGASGGASPVAFTPRGGLSPP----GHSPGPPRTFPSAPP 1028 Query: 321 EANERSHSLILGWLCTSPPPRSPGKSG 401 A+ SL+L + PPP+ P + G Sbjct: 1029 RASGSHGSLLLPPASSPPPPQVPQRRG 1055
>DBP_HUMAN (Q10586) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) (TAXREB302) Length = 325 Score = 30.4 bits (67), Expect = 1.9 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 5/93 (5%) Frame = +3 Query: 129 APRPRPTQTPRIGVLAPI--DRSIGFFAA*NGLPQYMRMS---WRSGSPPKPPWGSRMEP 293 +PR RP P G+LAP+ +R++ F G +Y+ + G PP PP P Sbjct: 86 SPRGRPGPVPAPGLLAPLLWERTLPF-----GDVEYVDLDAFLLEHGLPPSPP------P 134 Query: 294 AAGFTGSPPEANERSHSLILGWLCTSPPPRSPG 392 G + P A + S G ++ P SPG Sbjct: 135 PGGPSPEPSPARTPAPSPGPGSCGSASPRSSPG 167
>PCX3_MOUSE (Q8VI59) Pecanex-like protein 3| Length = 1620 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/45 (37%), Positives = 19/45 (42%) Frame = +3 Query: 258 PPKPPWGSRMEPAAGFTGSPPEANERSHSLILGWLCTSPPPRSPG 392 PP P WG R + G PP +L W PPPR PG Sbjct: 1464 PPGPSWGPRPSLSGSGDGRPPP--------LLQW----PPPRLPG 1496
>ADNP_MOUSE (Q9Z103) Activity-dependent neuroprotector (Activity-dependent| neuroprotective protein) Length = 828 Score = 30.0 bits (66), Expect = 2.4 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%) Frame = +3 Query: 219 LPQYMRMSWRSGSPPKPPWGSRMEPAAGFTGSPP------EANERSHSLILGWLCTSPPP 380 LP S+ G+ +PP +R T PP ++ S +LG + PPP Sbjct: 90 LPSGNGRSFGLGAEQRPPAAARYSLQTANTSLPPGQVKSPSVSQSQASRVLGQSSSKPPP 149 Query: 381 RSPGKSGDSTCSEQ 422 + G + C+ Q Sbjct: 150 AATGPPPSNHCATQ 163
>SYV_PYRAE (Q8ZVG2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 799 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 108 WRLARFIAPRPRPTQTPRIGVLAPIDRSI 194 W ++RF+ P P Q P+ LAP+DR++ Sbjct: 588 WNISRFVLSFPEPQQKPQ---LAPVDRAL 613
>CDC20_HUMAN (Q12834) Cell division cycle protein 20 homolog (p55CDC)| Length = 499 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Frame = +3 Query: 258 PPKPP--WGSRMEPAAGFTGSPPEANERSHSLILGWLCTSPPPRSPGKS 398 P PP W + + AAG SP A RSHS P R+PGKS Sbjct: 21 PNAPPARWQRKAKEAAGPAPSPMRAANRSHS------AGRTPGRTPGKS 63
>ADNP_RAT (Q9JKL8) Activity-dependent neuroprotector (Activity-dependent| neuroprotective protein) Length = 823 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%) Frame = +3 Query: 219 LPQYMRMSWRSGSPPKPPWGSRMEPAAGFTGSPPEANERSHSL-------ILGWLCTSPP 377 LP S+ G+ +PP +R T S P +S S+ +LG + PP Sbjct: 90 LPSGNGRSYGLGAEQRPPAAARYSLQTANTSSLPPGQVKSPSVSQSQASRVLGQSSSKPP 149 Query: 378 PRSPGKSGDSTCSEQ 422 P + G + C+ Q Sbjct: 150 PAATGPPPSNHCATQ 164
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 29.6 bits (65), Expect = 3.2 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +3 Query: 216 GLPQYMRMSWRSGSPPKPPWGSRMEPAAGFTGSPPEANERSHSLILGWLCTSPPPRS--P 389 GLP M G P P G + EPA G+ G+P E + + G PP R P Sbjct: 136 GLPGPPGMPGFPGPPGVP--GMKGEPAIGYAGAPGEKGDAGMPGMPG--LPGPPGRDGFP 191 Query: 390 GKSGD 404 G+ GD Sbjct: 192 GEKGD 196
>RPCH_CARMA (Q26324) Red pigment-concentrating prohormone precursor [Contains:| Red pigment-concentrating hormone (RPCH); RPCH-related peptide] Length = 110 Score = 29.6 bits (65), Expect = 3.2 Identities = 17/47 (36%), Positives = 20/47 (42%) Frame = +3 Query: 267 PPWGSRMEPAAGFTGSPPEANERSHSLILGWLCTSPPPRSPGKSGDS 407 P WG R +G +G EA H + G PP S SGDS Sbjct: 31 PGWGKRAAAGSGSSGGVGEAVSALHHSVGGAPGGVVPPGSSSSSGDS 77
>FBXW8_MOUSE (Q8BIA4) F-box/WD-repeat protein 8 (F-box and WD-40 domain protein| 8) Length = 598 Score = 29.6 bits (65), Expect = 3.2 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +3 Query: 255 SPPKPPWGSRMEPAAGFTGSPPEANERSHSLILGWLCTSPPPRSPGKSGD 404 SP +P G+R EPA+G+ G + L+ G PP PG+ GD Sbjct: 36 SPRRPEAGARGEPASGYLG-------LAQGLLEG--AGRPPAPRPGRGGD 76
>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein| (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C homolog) Length = 1288 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +3 Query: 249 SGSPPKPPWGSRMEPAAGFTGSPPEANERSHSLILGWLCTSPPPRSPGKSG 401 S + P+PP G PA + E + RS IL + PPP ++G Sbjct: 28 SDAEPEPPSGRTESPATAAETASEELDNRSLEEILNSIPPPPPPAMTNEAG 78
>HCN4_RAT (Q9JKA7) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1198 Score = 29.6 bits (65), Expect = 3.2 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Frame = +3 Query: 144 PTQTPRIGVLAPIDRSIGFFAA*NGLPQYMRMSWRSG-SPPKPPWGSRMEPAAGFTGSPP 320 P TP P F A +G + + R G SPP G P F +PP Sbjct: 989 PPSTPET---PPRPERPSFMAGASGGASPVAFTPRGGLSPP----GHSPGPPRTFPSAPP 1041 Query: 321 EANERSHSLILGWLCTSPPPRSPGKSG 401 A+ SL+L + PPP+ P + G Sbjct: 1042 RASGSHGSLLLPPASSPPPPQVPQRRG 1068
>GUAAA_METJA (Q58970) GMP synthase [glutamine-hydrolyzing] subunit A (EC| 6.3.5.2) (Glutamine amidotransferase) Length = 188 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -3 Query: 247 LQDILMYWGKPF*AAKKPIDRSIGASTPILGVCVGLGLGAM 125 ++ I++ G AK ID ++ A PILG+C+G L A+ Sbjct: 44 VKGIILSGGPDIEKAKNCIDIALNAKLPILGICLGHQLIAL 84
>TNR4_RAT (P15725) Tumor necrosis factor receptor superfamily member 4| precursor (OX40L receptor) (OX40 antigen) (MRC OX40) Length = 271 Score = 29.3 bits (64), Expect = 4.1 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = +3 Query: 162 IGVLAPIDRSIGFFAA*NGLPQYMRMSWRSGSPPKPPWGS 281 +G+LAP+ + + +R +WRS + PKP WG+ Sbjct: 220 LGLLAPLTVLLALYL--------LRKAWRSPNTPKPCWGN 251
>DBP_BOVIN (Q32PF6) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) Length = 325 Score = 29.3 bits (64), Expect = 4.1 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 5/93 (5%) Frame = +3 Query: 129 APRPRPTQTPRIGVLAPI--DRSIGFFAA*NGLPQYMRMS---WRSGSPPKPPWGSRMEP 293 +PR RP P G+LAP+ +R++ F G +Y+ + G PP PP P Sbjct: 86 SPRGRPGAAPGPGLLAPLLWERTLPF-----GDVEYVDLDAFLLEHGLPPSPP------P 134 Query: 294 AAGFTGSPPEANERSHSLILGWLCTSPPPRSPG 392 G + +P + S G ++ P SPG Sbjct: 135 PGGPSPAPSPVRTPAPSPRPGSCGSASPRSSPG 167
>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) (Fragment) Length = 1146 Score = 29.3 bits (64), Expect = 4.1 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Frame = +3 Query: 258 PPKPPW--GSRMEPAA-GFTGSPPEANERSHSLILGWLCTSPPPRSPGKSG 401 PP PP G + EP GFTG P E S G + PP PG G Sbjct: 521 PPGPPGPKGDQGEPGPRGFTGEPGEPGLPGFSSHGGTVTMQGPPGPPGPPG 571
>NECD_HUMAN (Q99608) Necdin| Length = 321 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = -3 Query: 427 SSCSEQVLSPDFPGERGGGEVQSQPKISEWERSFASGGDPVNPAAGSILEP 275 S S+ + P+F E EV S P +SE A+ +P +P G P Sbjct: 2 SEQSKDLSDPNFAAEAPNSEVHSSPGVSEGVPPSATLAEPQSPPLGPTAAP 52
>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1203 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +3 Query: 270 PWGSRMEPAAGFTGSPPEANERSHSLILGWLCTSPPPRSPGKSG 401 P G P F +PP A+ SL+L + PPP+ P + G Sbjct: 1027 PPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRG 1070
>PDPK1_HUMAN (O15530) 3-phosphoinositide-dependent protein kinase 1 (EC| 2.7.11.1) (hPDK1) Length = 556 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/58 (32%), Positives = 23/58 (39%) Frame = +3 Query: 222 PQYMRMSWRSGSPPKPPWGSRMEPAAGFTGSPPEANERSHSLILGWLCTSPPPRSPGK 395 P +R S +PP P GSR PA T + P G L + PP P K Sbjct: 26 PSMVRTQTESSTPPGIPGGSRQGPAMDGTAAEPRPG-------AGSLQHAQPPPQPRK 76
>TRUD_PSESM (Q886L6) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 352 Score = 28.9 bits (63), Expect = 5.4 Identities = 20/71 (28%), Positives = 27/71 (38%) Frame = +3 Query: 150 QTPRIGVLAPIDRSIGFFAA*NGLPQYMRMSWRSGSPPKPPWGSRMEPAAGFTGSPPEAN 329 Q ++G L S FF A R++ P P WG PA G T + A Sbjct: 219 QKAQVGDLLAFTDSRSFFPADVDECSDPRLAILDLHPTGPQWGEGPSPAGGATAALENAI 278 Query: 330 ERSHSLILGWL 362 S++ WL Sbjct: 279 ANDESVLRDWL 289
>FMN1A_MOUSE (Q05860) Formin-1 isoforms I/II/III (Limb deformity protein)| Length = 1468 Score = 28.9 bits (63), Expect = 5.4 Identities = 26/99 (26%), Positives = 37/99 (37%) Frame = +3 Query: 93 SSGQQWRLARFIAPRPRPTQTPRIGVLAPIDRSIGFFAA*NGLPQYMRMSWRSGSPPKPP 272 SS Q +++ P P P P I P+ +G +P +S PP PP Sbjct: 861 SSSSQQKISPPAPPTPPPLPPPLIPPPPPLPPGLGPLPPAPPIPPVCPVS--PPPPPPPP 918 Query: 273 WGSRMEPAAGFTGSPPEANERSHSLILGWLCTSPPPRSP 389 + + P+ G PP + L L PPP P Sbjct: 919 PPTPVPPSDGPPPPPPPPPPLPNVLALPNSGGPPPPPPP 957
>FMN1B_MOUSE (Q05859) Formin-1 isoform IV (Limb deformity protein)| Length = 1206 Score = 28.9 bits (63), Expect = 5.4 Identities = 26/99 (26%), Positives = 37/99 (37%) Frame = +3 Query: 93 SSGQQWRLARFIAPRPRPTQTPRIGVLAPIDRSIGFFAA*NGLPQYMRMSWRSGSPPKPP 272 SS Q +++ P P P P I P+ +G +P +S PP PP Sbjct: 635 SSSSQQKISPPAPPTPPPLPPPLIPPPPPLPPGLGPLPPAPPIPPVCPVS--PPPPPPPP 692 Query: 273 WGSRMEPAAGFTGSPPEANERSHSLILGWLCTSPPPRSP 389 + + P+ G PP + L L PPP P Sbjct: 693 PPTPVPPSDGPPPPPPPPPPLPNVLALPNSGGPPPPPPP 731
>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF| Length = 1097 Score = 28.5 bits (62), Expect = 7.1 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Frame = +3 Query: 141 RPTQTPRIGVLAPIDRSIGFFAA*--NGLPQYMRMSWRS---GSPPKPPWGSRMEPAAGF 305 RP+ P +G + + GF A+ G+P R GSPP G M P +G Sbjct: 129 RPSTGPLVGGGSSFPQPGGFPASGPPGGVPSGPPSGARPIGFGSPPPMGPGMSMPPPSGM 188 Query: 306 TGSPPEANERSHSLILGWLCTSPPP 380 G P + G L PPP Sbjct: 189 PGGPLSNGPPPSGMHGGHLSNGPPP 213
>DEND_HUMAN (O94850) Dendrin| Length = 657 Score = 28.5 bits (62), Expect = 7.1 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 7/91 (7%) Frame = +3 Query: 132 PRPRPTQTPRIGVLAPIDRSIGFFAA*NGLPQYMRMSWRS--GSPPKPPWGSRMEPAAGF 305 PRP P PR+ LA GLP +R + G P+P + +P + + Sbjct: 89 PRPEPRNAPRVAQLA-------------GLPAPLRPERLAPVGRAPRPSAQPQSDPGSAW 135 Query: 306 TG-----SPPEANERSHSLILGWLCTSPPPR 383 G P + +H L+ G T+P R Sbjct: 136 AGPWGGRRPGPPSYEAHLLLRGSAGTAPRRR 166
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 9/56 (16%) Frame = +3 Query: 252 GSPPKPPWGSRMEPAA--GFTGSPPEANERSHSLILGWLCT-------SPPPRSPG 392 G P WGSR+ P+A G+ G PP ++ + W+ PPP G Sbjct: 199 GQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRG 254
>GAG_SFV1 (Q00071) Gag polyprotein (Core polyprotein)| Length = 647 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = +3 Query: 249 SGSPPKPPWGSRMEPAAG---FTGSPPEANERSHSLI-LGWLCTSPPPRS 386 +G+PP PP ++PAA + P A S + LGW P P S Sbjct: 181 AGTPPPPPPSLDLQPAAASSPYVAPAPSAPAASAAAADLGWFAGGPGPGS 230
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.5 bits (62), Expect = 7.1 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +3 Query: 261 PKPPWGSRMEPA-AGFTGSPPEANERSHSLILGWLCTSPPPRSPGKSG 401 PK P G R P AG GSP EA + + G + P SPG G Sbjct: 493 PKGPSGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG 540
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 28.5 bits (62), Expect = 7.1 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +3 Query: 261 PKPPWGSRMEPA-AGFTGSPPEANERSHSLILGWLCTSPPPRSPGKSG 401 PK P G R P AG GSP EA + + G + P SPG G Sbjct: 504 PKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG 551
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 28.5 bits (62), Expect = 7.1 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +3 Query: 261 PKPPWGSRMEPA-AGFTGSPPEANERSHSLILGWLCTSPPPRSPGKSG 401 PK P G R P AG GSP EA + + G + P SPG G Sbjct: 500 PKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG 547
>POU12_BRARE (P56224) POU domain protein 12 (POU domain protein zp-12) (Class| III POU domain protein taichi) (Brain-specific homeobox/POU domain protein 1.1) (Brn-1.1) Length = 437 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -3 Query: 322 SGGDPVNPAAGSILEPHGGFGGDPLLQ 242 SGG + P +G++ GG+ GDP ++ Sbjct: 26 SGGGGMQPGSGAVTSVSGGYRGDPTVK 52
>NEST_RAT (P21263) Nestin| Length = 1805 Score = 28.1 bits (61), Expect = 9.2 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 5/115 (4%) Frame = +3 Query: 12 SNLRSRRHQAPDFVLSPV*YLS*IISPSSGQQWRLARFIAPRPRPTQTPRIGVLAPIDRS 191 S R P+F L + P Q W R ++ +G P Sbjct: 1451 SEALERVENEPEFGLGEI--------PEGLQDWEEGR------EESEADDLGETLPDSTP 1496 Query: 192 IGFFAA*NGLPQY-----MRMSWRSGSPPKPPWGSRMEPAAGFTGSPPEANERSH 341 +G + P++ R+S G K WG + A G +G P E E+ H Sbjct: 1497 LGLYLRSPASPKWDLAGEQRLS-PQGDAGKEDWGPAVPAAQGLSGPPEEEEEQGH 1550
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = +3 Query: 249 SGSPPKPPWGSRMEPAAGFTGSPPEANERSHSLILGWLCTSPPPRSPG 392 +G P PP GS + P G G PP A L + + P +PG Sbjct: 10 AGEGPLPPGGSGLGPGPG-AGKPPSALAGGGQLPVAGAARAAGPPTPG 56
>RS10_ORYSA (Q9AYP4) 40S ribosomal protein S10| Length = 183 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/49 (36%), Positives = 21/49 (42%) Frame = -3 Query: 397 DFPGERGGGEVQSQPKISEWERSFASGGDPVNPAAGSILEPHGGFGGDP 251 DF GE+GG + QP +SGG P G GGFG P Sbjct: 140 DFGGEKGGAPAEFQPSFR------SSGGRPGFGRGGG-----GGFGAGP 177
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +3 Query: 261 PKPPWGSRMEPA-AGFTGSPPEANERSHSLILGWLCTSPPPRSPGKSG 401 PK P G R P AG GSP EA + + G + P SPG G Sbjct: 493 PKGPSGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG 540
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +3 Query: 261 PKPPWGSRMEPAA-GFTGSPPEANERSHSLILGWLCTSPPPRSPGKSG 401 PK P G R P A G GSP EA + + G + P SPG G Sbjct: 493 PKGPPGERGSPGAVGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG 540
>PRIO_MOUSE (P04925) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 254 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -3 Query: 394 FPGERGGGEVQSQPKISEWERSFASGGDPVNPAAGSILEPHGGFGGDP 251 +PG+ G + P+ W + GG P GS +PHGG G P Sbjct: 38 YPGQGSPGGNRYPPQGGTWGQPH--GGGWGQPHGGSWGQPHGGSWGQP 83
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = +3 Query: 249 SGSPPKPPWGSRMEPAAGFTGSPPEANERSHSLILGWLCTSPPPRSPG 392 +G P PP GS + P G G PP A L + + P +PG Sbjct: 10 AGEGPLPPGGSGLGPGPG-AGKPPSALAGGGQLPVAGAARAAGPPTPG 56 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,107,637 Number of Sequences: 219361 Number of extensions: 1112962 Number of successful extensions: 4289 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 3992 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4212 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
