ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbast79b02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY044158.1| Zea mays ribosomal protein L2 mRNA, complete cds; nuclear gene for mitochondrial product Length = 1347 Score = 123 bits (62), Expect = 5e-25 Identities = 155/186 (83%) Strand = Plus / Minus Query: 235 taccctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgc 294 |||||||| ||||||||||| |||||||| || || || |||||||| || || || ||| Sbjct: 1280 taccctgctttggtgggctttccccagggagaaactgaaggcctgcctcctttagtacgc 1221 Query: 295 ccctcgcctcctccatggggatggtccaccgggttcatcgccacaccacggacgaccggc 354 ||||||||||| ||||||||||| ||||| || ||||| || ||||||||||| || || Sbjct: 1220 ccctcgcctccaccatggggatgatccacaggattcatagcaacaccacggacaacaggg 1161 Query: 355 cgcctgcccagccaccggctgtgccctgccttcctcagcttccgcgcaccgtgggtcggg 414 || ||||| | ||||| ||||||||||||||| || ||||| || | ||| ||| | ||| Sbjct: 1160 cgtctgcctaaccacctgctgtgccctgcctttcttagcttgcgtgtaccatggcttggg 1101 Query: 415 ttggag 420 |||||| Sbjct: 1100 ttggag 1095
>gb|AY108838.1| Zea mays PCO101143 mRNA sequence Length = 985 Score = 123 bits (62), Expect = 5e-25 Identities = 155/186 (83%) Strand = Plus / Minus Query: 235 taccctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgc 294 |||||||| ||||||||||| |||||||| || || || |||||||| || || || ||| Sbjct: 541 taccctgctttggtgggctttccccagggagaaactgaaggcctgcctcctttagtacgc 482 Query: 295 ccctcgcctcctccatggggatggtccaccgggttcatcgccacaccacggacgaccggc 354 ||||||||||| ||||||||||| ||||| || ||||| || ||||||||||| || || Sbjct: 481 ccctcgcctccaccatggggatgatccacaggattcatagcaacaccacggacaacaggg 422 Query: 355 cgcctgcccagccaccggctgtgccctgccttcctcagcttccgcgcaccgtgggtcggg 414 || ||||| | ||||| ||||||||||||||| || ||||| || | ||| ||| | ||| Sbjct: 421 cgtctgcctaaccacctgctgtgccctgcctttcttagcttgcgtgtaccatggcttggg 362 Query: 415 ttggag 420 |||||| Sbjct: 361 ttggag 356
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 238 cctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccc 297 ||||| ||||||||||||||||| || |||||||| || || || || || ||||||||| Sbjct: 298602 cctgctttggtgggcttcccccaaggtgacaccgaaggtctacctcctttcgtgcgcccc 298543 Query: 298 tcgcctcctccatggggatggtccaccgggttcatcgccacaccacg 344 || ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 298542 tcacctcctccatgaggatgatccactggattcattgcaacaccacg 298496
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 238 cctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccc 297 ||||| ||||||||||||||||| || |||||||| || || || || || ||||||||| Sbjct: 297792 cctgctttggtgggcttcccccaaggtgacaccgaaggtctacctcctttcgtgcgcccc 297733 Query: 298 tcgcctcctccatggggatggtccaccgggttcatcgccacaccacg 344 || ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 297732 tcacctcctccatgaggatgatccactggattcattgcaacaccacg 297686
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 238 cctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccc 297 ||||| ||||||||||||||||| || |||||||| || || || || || ||||||||| Sbjct: 297789 cctgctttggtgggcttcccccaaggtgacaccgaaggtctacctcctttcgtgcgcccc 297730 Query: 298 tcgcctcctccatggggatggtccaccgggttcatcgccacaccacg 344 || ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 297729 tcacctcctccatgaggatgatccactggattcattgcaacaccacg 297683
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 238 cctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccc 297 ||||| ||||||||||||||||| || |||||||| || || || || || ||||||||| Sbjct: 297641 cctgctttggtgggcttcccccaaggtgacaccgaaggtctacctcctttcgtgcgcccc 297582 Query: 298 tcgcctcctccatggggatggtccaccgggttcatcgccacaccacg 344 || ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 297581 tcacctcctccatgaggatgatccactggattcattgcaacaccacg 297535
>dbj|D78336.1| Oryza sativa (japonica cultivar-group) mitochondrial DNA for ribosomal protein L2, ribosomal protein S19, complete cds Length = 4565 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 238 cctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccc 297 ||||| ||||||||||||||||| || |||||||| || || || || || ||||||||| Sbjct: 4068 cctgctttggtgggcttcccccaaggtgacaccgaaggtctacctcctttcgtgcgcccc 4009 Query: 298 tcgcctcctccatggggatggtccaccgggttcatcgccacaccacg 344 || ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 4008 tcacctcctccatgaggatgatccactggattcattgcaacaccacg 3962
>gb|AF387182.1|AF387182 Viburnum sp. Qiu95083 ribosomal protein L2 (rpl2) mitochondrial pseudogene, partial sequence Length = 608 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 244 ttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccctcgcct 303 ||||||||||||||||| || |||||||| || || || || || ||||||||||| ||| Sbjct: 598 ttggtgggcttcccccaaggtgacaccgaaggtctacctcctttcgtgcgcccctcacct 539 Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 538 cctccatgaggatgatccactggattcattgcaacaccacg 498
>gb|AF387175.1|AF387175 Platanus occidentalis ribosomal protein L2 (rpl2) gene, partial cds; mitochondrial gene for mitochondrial product Length = 538 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 244 ttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccctcgcct 303 ||||||||||||||||| || |||||||| || || || || || ||||||||||| ||| Sbjct: 536 ttggtgggcttcccccaaggtgacaccgaaggtctacctcctttcgtgcgcccctcacct 477 Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 476 cctccatgaggatgatccactggattcattgcaacaccacg 436
>gb|AF387174.1|AF387174 Dicentra sp. Qiu 95026 ribosomal protein L2 (rpl2) gene, partial cds; mitochondrial gene for mitochondrial product Length = 559 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 244 ttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccctcgcct 303 ||||||||||||||||| || |||||||| || || || || || ||||||||||| ||| Sbjct: 543 ttggtgggcttcccccaaggtgacaccgaaggtctacctcctttcgtgcgcccctcacct 484 Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 483 cctccatgaggatgatccactggattcattgcaacaccacg 443
>gb|AF387183.1|AF387183 Lonicera sp. Palmer 679 ribosomal protein L2 (rpl2) mitochondrial pseudogene, partial sequence Length = 600 Score = 77.8 bits (39), Expect = 3e-11 Identities = 90/107 (84%) Strand = Plus / Plus Query: 238 cctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccc 297 ||||| ||||||||||||||||| || |||||||| || || || || || ||||||||| Sbjct: 11 cctgctttggtgggcttcccccaaggtgacaccgaaggtctacctcctttcgtgcgcccc 70 Query: 298 tcgcctcctccatggggatggtccaccgggttcatcgccacaccacg 344 || ||||||||||| ||||| | ||| || ||||| || |||||||| Sbjct: 71 tcacctcctccatgaggatgattcactggattcattgcaacaccacg 117
>gb|AF387180.1|AF387180 Diospyros virginiana ribosomal protein L2 (rpl2) mitochondrial pseudogene, partial sequence Length = 584 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 244 ttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccctcgcct 303 ||||||||||| ||||| || |||||||| || || || || || ||||||||||| ||| Sbjct: 564 ttggtgggctttccccaaggtgacaccgaaggtctacctcctttcgtgcgcccctcacct 505 Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 504 cctccatgaggatgatccactggattcattgcaacaccacg 464
>gb|AF387184.1|AF387184 Abutilon theophrasti ribosomal protein L2 (rpl2) mitochondrial pseudogene, partial sequence Length = 457 Score = 69.9 bits (35), Expect = 6e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 238 cctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccc 297 ||||| |||||||||||||| || || |||||||| || || || || || ||||||||| Sbjct: 456 cctgctttggtgggcttccctcaaggtgacaccgaaggtctacctcctttcgtgcgcccc 397 Query: 298 tcgcctcctccatggggatggtccaccgggttcatcgccacaccacg 344 || ||||||||||| ||||| ||||| || || || || |||||||| Sbjct: 396 tcacctcctccatgaggatgatccactggattgattgcaacaccacg 350
>gb|AF387185.1|AF387185 Quercus alba ribosomal protein L2 (rpl2) mitochondrial pseudogene, partial sequence Length = 541 Score = 67.9 bits (34), Expect = 2e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 243 cttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccctcgcc 302 ||||||||||||||| || || || ||||| || || || || || ||||||||||| || Sbjct: 539 cttggtgggcttccctcaaggtgaaaccgaaggtctacctcctttcgtgcgcccctcacc 480 Query: 303 tcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 479 tcctccatgaggatgatccactggattcattgcaacaccacg 438
>gb|AF387179.1|AF387179 Hydrangea arborescens ribosomal protein L2 (rpl2) mitochondrial pseudogene, partial sequence Length = 591 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 243 cttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccctcgcc 302 |||||||||||||||||| | |||||||| || || || || || ||||||||||| || Sbjct: 590 cttggtgggcttcccccaagctgacaccgaaggtctacctcctttcgtgcgcccctcccc 531 Query: 303 tcctccatggggatggtccac 323 ||||||||| ||||| ||||| Sbjct: 530 tcctccatgaggatgatccac 510
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Minus Query: 239 ctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccct 298 |||| ||||||||||||||||| || |||||||| || || || || || |||| ||||| Sbjct: 3076024 ctgctttggtgggcttcccccaaggtgacaccgaaggtctacctcctttcgtgcacccct 3075965 Query: 299 cgcctcctccatggggatggtccac 323 | ||||||||||| ||||| ||||| Sbjct: 3075964 cacctcctccatgaggatgatccac 3075940
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0041E11 Length = 146335 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Minus Query: 239 ctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccct 298 |||| ||||||||||||||||| || |||||||| || || || || || |||| ||||| Sbjct: 19812 ctgctttggtgggcttcccccaaggtgacaccgaaggtctacctcctttcgtgcacccct 19753 Query: 299 cgcctcctccatggggatggtccac 323 | ||||||||||| ||||| ||||| Sbjct: 19752 cacctcctccatgaggatgatccac 19728
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Minus Query: 239 ctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccct 298 |||| ||||||||||||||||| || |||||||| || || || || || |||| ||||| Sbjct: 44064 ctgctttggtgggcttcccccaaggtgacaccgaaggtctacctcctttcgtgcacccct 44005 Query: 299 cgcctcctccatggggatggtccac 323 | ||||||||||| ||||| ||||| Sbjct: 44004 cacctcctccatgaggatgatccac 43980
>gb|AY109618.1| Zea mays CL8996_1 mRNA sequence Length = 1322 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacggac 347 |||||||| |||||||| ||||| |||||||| |||||||||||||| Sbjct: 716 cctcctccgtggggatgctccacggggttcatggccacaccacggac 670
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 238 cctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccc 297 ||||| |||||| |||| ||||| || |||||||| || || || || || ||||||||| Sbjct: 283484 cctgctttggtgagctttccccaaggtgacaccgaaggtctacctcctttcgtgcgcccc 283543 Query: 298 tcgcctcctccatggggatggtccaccgggttcat 332 || ||||||||||| ||||| ||||| || ||||| Sbjct: 283544 tcacctcctccatgaggatgatccactggattcat 283578
>emb|AJ295995.1|TAE295995 Triticum aestivum mitochondrial partial rpl2 pseudogene Length = 659 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Minus Query: 238 cctgccttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccc 297 ||||| |||||| |||| ||||| || |||||||| || || || || || ||||||||| Sbjct: 267 cctgctttggtgagctttccccaaggtgacaccgaaggtctacctcctttcgtgcgcccc 208 Query: 298 tcgcctcctccatggggatggtccaccgggttcat 332 || ||||||||||| ||||| ||||| || ||||| Sbjct: 207 tcacctcctccatgaggatgatccactggattcat 173
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 316 tggtccaccgggttcatcgccacaccacggacg 348 |||||||||||||||||| |||||||||||||| Sbjct: 4640534 tggtccaccgggttcatcaccacaccacggacg 4640502
>ref|NM_114978.1| Arabidopsis thaliana structural constituent of ribosome AT3G51190 mRNA, complete cds Length = 783 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 644 cctcctccgtggggatgttccactgggttcatcgcaacaccacg 601
>gb|AF479049.1| Triticum aestivum ribosomal protein L2 mRNA, partial cds Length = 270 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| |||||||| ||||| |||||||| ||||||||||| Sbjct: 125 cctcctccgtggggatgctccacagggttcatggccacaccacg 82
>emb|AL132980.3|ATF24M12 Arabidopsis thaliana DNA chromosome 3, BAC clone F24M12 Length = 129516 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 76070 cctcctccgtggggatgttccactgggttcatcgcaacaccacg 76113
>gb|DQ056619.1| Arabidopsis thaliana 60S ribosomal protein L8 (At3g51190) mRNA, complete cds Length = 783 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 644 cctcctccgtggggatgttccactgggttcatcgcaacaccacg 601
>gb|AF387177.1|AF387177 Corylopsis glabrescens f. gotoana ribosomal protein L2 (rpl2) mitochondrial pseudogene, partial sequence Length = 522 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 289 gtgcgcccctcgcctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 512 gtgcgcccctcacctcctccatgaggatgatccactggattcattgcaacaccacg 457
>gb|AY105581.1| Zea mays PCO150618 mRNA sequence Length = 1102 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| |||||||| ||||| |||||||| ||||||||||| Sbjct: 712 cctcctccgtggggatgctccacagggttcatggccacaccacg 669
>dbj|AB242299.1| Asterias amurensis PKA-R mRNA for protein kinase A regulatory subunit, complete cds Length = 2300 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 310 tggggatggtccaccgggttcatcgccacaccacg 344 |||||||||||||| |||||||| ||||||||||| Sbjct: 1971 tggggatggtccacagggttcattgccacaccacg 1937
>gb|DQ213525.1| Taeniopygia guttata clone 0058P0034B06 ribosomal protein L8-like mRNA, complete sequence Length = 881 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 298 tcgcctcctccatggggatggtccaccgggttcatcgccacaccacggac 347 ||||||||||| |||||| ||||| |||||||| |||||||||||||| Sbjct: 694 tcgcctcctccgaagggatgctccacagggttcatggccacaccacggac 645
>gb|DQ213523.1| Taeniopygia guttata clone 0058P0011G02 ribosomal protein L8-like mRNA, complete sequence Length = 882 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 298 tcgcctcctccatggggatggtccaccgggttcatcgccacaccacggac 347 ||||||||||| |||||| ||||| |||||||| |||||||||||||| Sbjct: 694 tcgcctcctccgaagggatgctccacagggttcatggccacaccacggac 645
>gb|BT012998.1| Lycopersicon esculentum clone 114219R, mRNA sequence Length = 929 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 307 ccatggggatggtccaccgggttcatcgccacaccacg 344 ||||| ||||| |||||||| ||||||||||||||||| Sbjct: 537 ccatgtggatgatccaccggattcatcgccacaccacg 500
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 295 ccctcgcctcctccatggggatggtccaccgggttcatcgccacaccacggacg 348 |||||||| || ||||| || || |||||||||||||| |||||||||||||| Sbjct: 4233996 ccctcgccaccgccatgcgggtgatccaccgggttcataaccacaccacggacg 4234049
>gb|AY044159.1| Lycopersicon esculentum ribosomal protein L2 gene, complete cds; nuclear gene for mitochondrial product Length = 689 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 307 ccatggggatggtccaccgggttcatcgccacaccacg 344 ||||| ||||| |||||||| ||||||||||||||||| Sbjct: 574 ccatgtggatgatccaccggattcatcgccacaccacg 537
>gb|AY857413.1| Suberites domuncula L2/L8 mRNA, partial cds Length = 717 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 307 ccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 635 ccatggggatgctccacagggttcatagccacaccacg 598
>gb|AY130436.1| Branchiostoma lanceolatum ribosomal protein L8 mRNA, partial cds Length = 543 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 307 ccatggggatggtccaccgggttcatcgccacaccacggacg 348 ||||||||||| || || |||||||| ||||||||||||||| Sbjct: 476 ccatggggatgctcaacggggttcatagccacaccacggacg 435
>dbj|AB251495.1| Physcomitrella patens mitochondrial DNA, complete genome Length = 105340 Score = 52.0 bits (26), Expect = 0.001 Identities = 80/98 (81%) Strand = Plus / Minus Query: 244 ttggtgggcttcccccagggcgacaccgacggcctgccgcccttggtgcgcccctcgcct 303 |||| |||||| ||||| || || ||||| || || || || || ||||| || |||||| Sbjct: 93722 ttggcgggctttccccaaggtgataccgaaggtctacctcctttcgtgcgtccttcgcct 93663 Query: 304 cctccatggggatggtccaccgggttcatcgccacacc 341 |||||||| ||||| |||||||| ||||| || ||||| Sbjct: 93662 cctccatgaggatgatccaccggattcatagcaacacc 93625
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 324 cgggttcatcgccacaccacggacg 348 ||||||||||||||||||||||||| Sbjct: 3106247 cgggttcatcgccacaccacggacg 3106271
>ref|NM_127358.3| Arabidopsis thaliana EMB2296; structural constituent of ribosome AT2G18020 (EMB2296) mRNA, complete cds Length = 968 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| ||||| || ||||| ||||||||||| Sbjct: 688 cctcctccatgaggatgctccactggattcatagccacaccacg 645
>gb|DQ213524.1| Taeniopygia guttata clone 0058P0020H02 ribosomal protein L8-like mRNA, complete sequence Length = 903 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Minus Query: 312 gggatggtccaccgggttcatcgccacaccacggac 347 |||||| ||||| |||||||| |||||||||||||| Sbjct: 702 gggatgctccacagggttcatggccacaccacggac 667
>gb|DQ213521.1| Taeniopygia guttata clone 0058P0051G10 ribosomal protein L8-like mRNA, complete sequence Length = 854 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Minus Query: 312 gggatggtccaccgggttcatcgccacaccacggac 347 |||||| ||||| |||||||| |||||||||||||| Sbjct: 654 gggatgctccacagggttcatggccacaccacggac 619
>emb|X86765.1|ATC24RPL2 A.thaliana mRNA for ribosomal protein L2 Length = 1002 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| ||||| || ||||| ||||||||||| Sbjct: 705 cctcctccatgaggatgctccactggattcatagccacaccacg 662
>gb|AY128314.1| Arabidopsis thaliana 60S ribosomal protein L2 (At2g18020) mRNA, complete cds Length = 944 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| ||||| || ||||| ||||||||||| Sbjct: 688 cctcctccatgaggatgctccactggattcatagccacaccacg 645
>gb|AC006201.4| Arabidopsis thaliana chromosome 2 clone T27K22 map c245, complete sequence Length = 88149 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| ||||| || ||||| ||||||||||| Sbjct: 37865 cctcctccatgaggatgctccactggattcatagccacaccacg 37908
>gb|AF387178.1|AF387178 Cornus foemina ribosomal protein L2 (rpl2) mitochondrial pseudogene, partial sequence Length = 523 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 289 gtgcgcccctcgcctcctccatggggatggtccaccgggttcat 332 ||||||||||| ||||||||||| ||||| ||||| || ||||| Sbjct: 502 gtgcgcccctcacctcctccatgaggatgatccactggattcat 459
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 48.1 bits (24), Expect = 0.023 Identities = 51/60 (85%) Strand = Plus / Minus Query: 289 gtgcgcccctcgcctcctccatggggatggtccaccgggttcatcgccacaccacggacg 348 |||||||||||||| || || || || || || |||||||||||| | |||||||||||| Sbjct: 439940 gtgcgcccctcgccaccgccgtgcgggtgatcgaccgggttcatcacgacaccacggacg 439881
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| |||||||| || || |||||||| ||||||||||| Sbjct: 23385102 cctcctccgtggggatgctcaacggggttcatggccacaccacg 23385059
>emb|BX820589.1|CNS0A8QO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH50ZB11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 930 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| ||||| || ||||| ||||||||||| Sbjct: 666 cctcctccatgaggatgctccactggattcatagccacaccacg 623
>emb|BX820233.1|CNS0A8O8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH10ZE05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 881 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| ||||| || ||||| ||||||||||| Sbjct: 652 cctcctccatgaggatgctccactggattcatagccacaccacg 609
>emb|BX820387.1|CNS0A8NL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH28ZH04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 946 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| ||||| || ||||| ||||||||||| Sbjct: 666 cctcctccatgaggatgctccactggattcatagccacaccacg 623
>emb|BX820018.1|CNS0A8IW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS61ZG10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 887 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| ||||| || ||||| ||||||||||| Sbjct: 659 cctcctccatgaggatgctccactggattcatagccacaccacg 616
>emb|BX820320.1|CNS0A7WS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH22ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 901 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| ||||| || ||||| ||||||||||| Sbjct: 637 cctcctccatgaggatgctccactggattcatagccacaccacg 594
>dbj|AK104806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E03, full insert sequence Length = 1037 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| |||||||| || || |||||||| ||||||||||| Sbjct: 706 cctcctccgtggggatgctcaacggggttcatggccacaccacg 663
>dbj|AK070647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063F19, full insert sequence Length = 1072 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| |||||||| || || |||||||| ||||||||||| Sbjct: 707 cctcctccgtggggatgctcaacggggttcatggccacaccacg 664
>gb|AY108123.1| Zea mays PCO067267 mRNA sequence Length = 1062 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| || || |||||||| ||||||||||| Sbjct: 737 cctcctccatgaggatgctcaacagggttcatggccacaccacg 694
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| |||||||| || || |||||||| ||||||||||| Sbjct: 23313293 cctcctccgtggggatgctcaacggggttcatggccacaccacg 23313250
>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162261 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| |||||||| || || |||||||| ||||||||||| Sbjct: 117057 cctcctccgtggggatgctcaacggggttcatggccacaccacg 117100
>emb|CT032322.1| Platynereis dumerilii EST IB0AAA40CH03EM1 Length = 759 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| || || |||||||| ||||||||||| Sbjct: 674 cctcctccatgaggatgctcaacggggttcatagccacaccacg 631
>gb|BT001177.1| Arabidopsis thaliana 60S ribosomal protein L2 (At2g18020) mRNA, complete cds Length = 858 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| ||||| || ||||| ||||||||||| Sbjct: 641 cctcctccatgaggatgctccactggattcatagccacaccacg 598
>ref|XM_505841.1| Yarrowia lipolytica CLIB122, YALI0F24739g predicted mRNA Length = 765 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 307 ccatggggatggtccaccgggttcatcgccacacc 341 |||||||||||||| || |||||||| |||||||| Sbjct: 635 ccatggggatggtcgacggggttcatagccacacc 601
>gb|AF098520.1|AF098520 Drosophila melanogaster ribosomal protein L8 (rpL8) gene, complete cds Length = 1718 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 310 tggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| |||||||| ||||||||||| Sbjct: 1410 tggggatgctccacggggttcatggccacaccacg 1376
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 307 ccatggggatggtccaccgggttcatcgccacacc 341 |||||||||||||| || |||||||| |||||||| Sbjct: 3210487 ccatggggatggtcgacggggttcatagccacacc 3210453
>gb|AY147698.1| Mayaca fluviatilis ribosomal protein L2 (rpl2) gene, partial cds; chloroplast Length = 1258 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 307 ccatggggatggtccaccgggttcat 332 ||||||||||||||||| |||||||| Sbjct: 1209 ccatggggatggtccactgggttcat 1184
>ref|XM_790908.1| PREDICTED: Strongylocentrotus purpuratus similar to ribosomal protein L8 (LOC591341), mRNA Length = 788 Score = 44.1 bits (22), Expect = 0.36 Identities = 34/38 (89%) Strand = Plus / Minus Query: 307 ccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||||||||| || |||||||| || |||||||| Sbjct: 649 ccatggggatggtcaacggggttcatagcaacaccacg 612
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 316 tggtccaccgggttcatcgccacacc 341 ||||| |||||||||||||||||||| Sbjct: 5989926 tggtcaaccgggttcatcgccacacc 5989901
>gb|AY168762.1| Branchiostoma belcheri tsingtaunese ribosomal protein L8 mRNA, complete cds Length = 477 Score = 44.1 bits (22), Expect = 0.36 Identities = 34/38 (89%) Strand = Plus / Minus Query: 307 ccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| || || |||||||| ||||||||||| Sbjct: 251 ccatggggatgctcaacagggttcatagccacaccacg 214
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 44.1 bits (22), Expect = 0.36 Identities = 34/38 (89%) Strand = Plus / Plus Query: 295 ccctcgcctcctccatggggatggtccaccgggttcat 332 |||||||| || || ||||| ||||||||||||||||| Sbjct: 1588473 ccctcgccgccgccgtgggggtggtccaccgggttcat 1588510
>gb|DQ206555.1| Leucosolenia sp. AR-2003 isolate TOA23 ribosomal protein 8 large subunit mRNA, partial cds Length = 385 Score = 44.1 bits (22), Expect = 0.36 Identities = 37/42 (88%) Strand = Plus / Minus Query: 307 ccatggggatggtccaccgggttcatcgccacaccacggacg 348 ||||| ||||| || ||||||||||| || |||||||||||| Sbjct: 383 ccatgaggatgctctaccgggttcatagcaacaccacggacg 342
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 44.1 bits (22), Expect = 0.36 Identities = 34/38 (89%) Strand = Plus / Plus Query: 295 ccctcgcctcctccatggggatggtccaccgggttcat 332 |||||||| || || ||||| ||||||||||||||||| Sbjct: 1264343 ccctcgccgccgccgtgggggtggtccaccgggttcat 1264380
>gb|M99055.1|MQSRPL8X Mosquito ribosomal protein L8 (rpL8) gene exons 1-3, complete cds Length = 2231 Score = 44.1 bits (22), Expect = 0.36 Identities = 34/38 (89%) Strand = Plus / Minus Query: 307 ccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| || || |||||||| ||||||||||| Sbjct: 1919 ccatggggatgctcaacggggttcatagccacaccacg 1882
>gb|AY147721.1| Allium textile ribosomal protein L2 (rpl2) gene, partial cds; chloroplast Length = 1260 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 1214 cctccatggggatggtctacagggttcat 1186
>gb|AY596744.1| Lepistemon owariensis ribosomal protein L2 (rpl2) gene, partial cds; chloroplast Length = 565 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 540 cctccatggggatggtctacagggttcat 512
>gb|DQ069411.1| Nuphar advena ribosomal protein L2 (rpl2) gene, partial cds; chloroplast Length = 819 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 698 cctccatggggatggtctacagggttcat 670
>ref|XM_757274.1| Ustilago maydis 521 hypothetical protein (UM06220.1) partial mRNA Length = 303 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 316 tggtccaccgggttcatcgccacaccacg 344 ||||| ||||||||||| ||||||||||| Sbjct: 161 tggtcaaccgggttcatagccacaccacg 133
>gb|AY007489.1| Austrobaileya scandens ribosomal protein L2 (rpl2) gene, partial cds; chloroplast gene for chloroplast product Length = 1268 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 1222 cctccatggggatggtctacagggttcat 1194
>emb|Z98743.1|HS181C9 Human DNA sequence from clone RP1-181C9 on chromosome 22q13.2-13.33, complete sequence Length = 92472 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 367 caccggctgtgccctgccttc 387 ||||||||||||||||||||| Sbjct: 70592 caccggctgtgccctgccttc 70612
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 316 tggtccaccgggttcatcgccacaccacggacg 348 ||||| |||||||||||| | |||||||||||| Sbjct: 3476998 tggtcgaccgggttcatcacgacaccacggacg 3477030
>gb|AF426458.1| Primary endosymbiont of Sitophilus zeamais ribosomal protein L2-like protein (rplB) gene, partial cds Length = 665 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 tggtccaccgggttcatcgcc 336 ||||||||||||||||||||| Sbjct: 57 tggtccaccgggttcatcgcc 77
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 316 tggtccaccgggttcatcgccacaccacg 344 ||||||||||||||||| |||||||||| Sbjct: 52447 tggtccaccgggttcatgaccacaccacg 52419
>emb|AL096859.2|ATT6H20 Arabidopsis thaliana DNA chromosome 3, BAC clone T6H20 Length = 98461 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 89098 cctccatggggatggtcgacagggttcat 89070
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 159768 cctccatggggatggtctacagggttcat 159740 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 90177 cctccatggggatggtctacagggttcat 90205
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 ccggccgcctgcccagccacc 370 ||||||||||||||||||||| Sbjct: 1563417 ccggccgcctgcccagccacc 1563437
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome Length = 1176248 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aaacacatcacttgttattat 21 ||||||||||||||||||||| Sbjct: 427776 aaacacatcacttgttattat 427756
>gb|AF188855.1|AF188855 Nymphaea odorata ribosomal protein L2 (rpl2) gene, partial cds; chloroplast gene for chloroplast product Length = 1274 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 1228 cctccatggggatggtctacagggttcat 1200
>emb|BX322622.10| Zebrafish DNA sequence from clone DKEYP-14D3 in linkage group 8, complete sequence Length = 162365 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 acttgttattattgatacatgataa 34 ||||||||||||||| ||||||||| Sbjct: 50068 acttgttattattgagacatgataa 50092
>gb|AF123787.1|AF123787 Cabomba caroliniana ribosomal protein L2 (rpl2) gene, partial cds; chloroplast gene for chloroplast product Length = 1272 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 1228 cctccatggggatggtctacagggttcat 1200
>gb|AY007498.1| Schisandra chinensis ribosomal protein L2 (rpl2) gene, partial cds; chloroplast gene for chloroplast product Length = 1267 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 1221 cctccatggggatggtctacagggttcat 1193
>gb|AY007491.1| Gunnera chilensis ribosomal protein L2 (rpl2) gene, partial cds; chloroplast gene for chloroplast product Length = 1249 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 1203 cctccatggggatggtctacagggttcat 1175
>gb|AY007488.1| Arabidopsis thaliana ribosomal protein L2 (rpl2) gene, partial cds; chloroplast gene for chloroplast product Length = 1266 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 1240 cctccatggggatggtcgacagggttcat 1212
>emb|BX088532.7| Zebrafish DNA sequence from clone CH211-127E17 in linkage group 8, complete sequence Length = 115792 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 acttgttattattgatacatgataa 34 ||||||||||||||| ||||||||| Sbjct: 39200 acttgttattattgagacatgataa 39224
>emb|CT033621.1| Platynereis dumerilii EST IB0AAA17BB03EM1 Length = 884 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 674 cctccatgaggatgctcaacggggttcatagccacaccacg 634
>emb|CT033394.1| Platynereis dumerilii EST IB0AAA21BA08EM1 Length = 883 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 688 cctccatgaggatgctcaacggggttcatagccacaccacg 648
>emb|CT033393.1| Platynereis dumerilii EST IB0AAA21BA08FM1 Length = 814 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 197 cctccatgaggatgctcaacggggttcatagccacaccacg 237
>emb|CT033188.1| Platynereis dumerilii EST IB0AAA25AH04EM1 Length = 878 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||| |||||||| || || |||||||| ||||||||||| Sbjct: 683 cctccgtggggatgctcaacggggttcatagccacaccacg 643
>emb|CT033187.1| Platynereis dumerilii EST IB0AAA25AH04FM1 Length = 823 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||| |||||||| || || |||||||| ||||||||||| Sbjct: 196 cctccgtggggatgctcaacggggttcatagccacaccacg 236
>emb|CT032883.1| Platynereis dumerilii EST IB0AAA30AD02EM1 Length = 834 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 670 cctccatgaggatgctcaacggggttcatagccacaccacg 630
>emb|CT032882.1| Platynereis dumerilii EST IB0AAA30AD02FM1 Length = 838 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 197 cctccatgaggatgctcaacggggttcatagccacaccacg 237
>emb|CT032622.1| Platynereis dumerilii EST IB0AAA35AA08FM1 Length = 834 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 210 cctccatgaggatgctcaacggggttcatagccacaccacg 250
>emb|CT032614.1| Platynereis dumerilii EST IB0AAA35BC06EM1 Length = 854 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 674 cctccatgaggatgctcaacggggttcatagccacaccacg 634
>emb|CT032290.1| Platynereis dumerilii EST IB0AAA41CE04EM1 Length = 869 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 672 cctccatgaggatgctcaacggggttcatagccacaccacg 632
>emb|CT032289.1| Platynereis dumerilii EST IB0AAA41CE04FM1 Length = 844 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 197 cctccatgaggatgctcaacggggttcatagccacaccacg 237
>emb|CT032278.1| Platynereis dumerilii EST IB0AAA41DB03EM1 Length = 868 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 672 cctccatgaggatgctcaacggggttcatagccacaccacg 632
>emb|CT032277.1| Platynereis dumerilii EST IB0AAA41DB03FM1 Length = 822 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 304 cctccatggggatggtccaccgggttcatcgccacaccacg 344 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 197 cctccatgaggatgctcaacggggttcatagccacaccacg 237
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 154182 cctccatggggatggtcgacagggttcat 154154 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 304 cctccatggggatggtccaccgggttcat 332 ||||||||||||||||| || |||||||| Sbjct: 84467 cctccatggggatggtcgacagggttcat 84495
>emb|AJ343462.1|HSA343462 Homo sapiens genomic sequence surrounding NotI site, clone NR1-CG4R Length = 741 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 caccggctgtgccctgccttc 387 ||||||||||||||||||||| Sbjct: 552 caccggctgtgccctgccttc 532
>ref|XM_474323.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1701 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cgacggcctgccgcccttgg 289 |||||||||||||||||||| Sbjct: 1638 cgacggcctgccgcccttgg 1619
>gb|BC059473.1| Danio rerio ribosomal protein L8, mRNA (cDNA clone MGC:73105 IMAGE:4786513), complete cds Length = 841 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 312 gggatggtccaccgggttcatcgccacaccacggac 347 |||||| || || |||||||| |||||||||||||| Sbjct: 645 gggatgctcaacagggttcatagccacaccacggac 610
>gb|AY190734.1| Pagrus major ribosomal protein L8 mRNA, partial cds Length = 688 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 312 gggatggtccaccgggttcatcgccacaccacggac 347 |||||| || || |||||||| |||||||||||||| Sbjct: 657 gggatgctcaacagggttcatagccacaccacggac 622
>gb|AY389974.1| Latimeria chalumnae ribosomal protein L8 mRNA, partial cds Length = 509 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 312 gggatggtccaccgggttcatcgccacaccacggac 347 |||||| || || |||||||| |||||||||||||| Sbjct: 448 gggatgttctacagggttcatagccacaccacggac 413
>gb|AY658799.1| Synthetic construct Peudomonas aeruginosa clone FLH034232.01F PA4260 gene, partial cds Length = 822 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 307 ccatggggatggtccaccgggttcatcgccac 338 ||||| || ||||| ||||||||||||||||| Sbjct: 698 ccatgcgggtggtcgaccgggttcatcgccac 667
>gb|BT014913.1| Drosophila melanogaster RH21963 full insert cDNA Length = 2439 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 313 ggatggtccaccgggttcatcgccacaccacg 344 ||||| ||||| |||||||| ||||||||||| Sbjct: 2120 ggatgctccacggggttcatggccacaccacg 2089
>gb|AY919670.1| Pimephales promelas 60S ribosomal protein L8 mRNA, partial cds Length = 709 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 312 gggatggtccaccgggttcatcgccacaccacggac 347 |||||| || || |||||||| |||||||||||||| Sbjct: 592 gggatgctcaacagggttcatagccacaccacggac 557
>ref|NM_200713.1| Danio rerio ribosomal protein L8 (rpl8), mRNA Length = 841 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 312 gggatggtccaccgggttcatcgccacaccacggac 347 |||||| || || |||||||| |||||||||||||| Sbjct: 645 gggatgctcaacagggttcatagccacaccacggac 610
>gb|AC123883.10| Mus musculus chromosome 3, clone RP23-461P7, complete sequence Length = 199554 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 ggctgtgccctgccttcctc 390 |||||||||||||||||||| Sbjct: 152888 ggctgtgccctgccttcctc 152869
>gb|AY267353.1| Chara vulgaris mitochondrion, complete genome Length = 67737 Score = 40.1 bits (20), Expect = 5.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| |||||||| || || ||||| || |||||||| Sbjct: 19641 cctcctccatgaggatggtctacaggattcatagcaacaccacg 19684
>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05, complete sequence Length = 164943 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cgacggcctgccgcccttgg 289 |||||||||||||||||||| Sbjct: 68959 cgacggcctgccgcccttgg 68978
>gb|BC065432.1| Danio rerio ribosomal protein L8, mRNA (cDNA clone MGC:77641 IMAGE:6996953), complete cds Length = 892 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 312 gggatggtccaccgggttcatcgccacaccacggac 347 |||||| || || |||||||| |||||||||||||| Sbjct: 642 gggatgctcaacagggttcatagccacaccacggac 607
>gb|AC011905.4| Drosophila melanogaster 3L BAC RP98-27A3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 192681 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 313 ggatggtccaccgggttcatcgccacaccacg 344 ||||| ||||| |||||||| ||||||||||| Sbjct: 127313 ggatgctccacggggttcatggccacaccacg 127282
>ref|NM_167955.1| Drosophila melanogaster Ribosomal protein L8 CG1263-RB, transcript variant B (RpL8), mRNA Length = 1264 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 313 ggatggtccaccgggttcatcgccacaccacg 344 ||||| ||||| |||||||| ||||||||||| Sbjct: 841 ggatgctccacggggttcatggccacaccacg 810
>ref|NM_079987.2| Drosophila melanogaster Ribosomal protein L8 CG1263-RA, transcript variant A (RpL8), mRNA Length = 1118 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 313 ggatggtccaccgggttcatcgccacaccacg 344 ||||| ||||| |||||||| ||||||||||| Sbjct: 695 ggatgctccacggggttcatggccacaccacg 664
>gb|AY071342.1| Drosophila melanogaster RE37829 full length cDNA Length = 1019 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 313 ggatggtccaccgggttcatcgccacaccacg 344 ||||| ||||| |||||||| ||||||||||| Sbjct: 693 ggatgctccacggggttcatggccacaccacg 662
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 307 ccatggggatggtccaccgggttcatcgccac 338 |||||||| ||||| |||||||||||| |||| Sbjct: 3105595 ccatgggggtggtcgaccgggttcatcaccac 3105626
>gb|BT022891.1| Drosophila melanogaster IP12501 full insert cDNA Length = 1776 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 313 ggatggtccaccgggttcatcgccacaccacg 344 ||||| ||||| |||||||| ||||||||||| Sbjct: 496 ggatgctccacggggttcatggccacaccacg 465
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cgacggcctgccgcccttgg 289 |||||||||||||||||||| Sbjct: 34451474 cgacggcctgccgcccttgg 34451493
>emb|BX818795.1|CNS0A8ZD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB13ZH09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 878 Score = 40.1 bits (20), Expect = 5.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 301 cctcctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||||||| ||||| ||||| || ||||| |||||| |||| Sbjct: 659 cctcctccatgaggatgctccactggattcatagccacaacacg 616
>gb|AF401561.1| Ictalurus punctatus ribosomal protein L8 mRNA, complete cds Length = 821 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 312 gggatggtccaccgggttcatcgccacaccacggac 347 |||||| || || |||||||| |||||||||||||| Sbjct: 646 gggatgctcaacagggttcatagccacaccacggac 611
>gb|AE004841.1| Pseudomonas aeruginosa PAO1, section 402 of 529 of the complete genome Length = 15733 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 307 ccatggggatggtccaccgggttcatcgccac 338 ||||| || ||||| ||||||||||||||||| Sbjct: 13406 ccatgcgggtggtcgaccgggttcatcgccac 13437
>dbj|AK119773.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-F05, full insert sequence Length = 1898 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cgacggcctgccgcccttgg 289 |||||||||||||||||||| Sbjct: 1679 cgacggcctgccgcccttgg 1660
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tccaccgggttcatcgccac 338 |||||||||||||||||||| Sbjct: 3237556 tccaccgggttcatcgccac 3237575
>gb|AC115021.15| Mus musculus chromosome 3, clone RP24-232N19, complete sequence Length = 168461 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 ggctgtgccctgccttcctc 390 |||||||||||||||||||| Sbjct: 41418 ggctgtgccctgccttcctc 41399
>dbj|AK059048.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D12, full insert sequence Length = 1174 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cgacggcctgccgcccttgg 289 |||||||||||||||||||| Sbjct: 967 cgacggcctgccgcccttgg 948
>gb|AF164152.1|AF164152 Anopheles gambiae strain M2 ribosomal protein L8 (rpL8) mRNA, complete cds Length = 937 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gggttcatcgccacaccacg 344 |||||||||||||||||||| Sbjct: 676 gggttcatcgccacaccacg 657
>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete sequence Length = 138387 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cgacggcctgccgcccttgg 289 |||||||||||||||||||| Sbjct: 72772 cgacggcctgccgcccttgg 72791
>gb|AE003475.4| Drosophila melanogaster chromosome 3L, section 9 of 83 of the complete sequence Length = 301691 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 313 ggatggtccaccgggttcatcgccacaccacg 344 ||||| ||||| |||||||| ||||||||||| Sbjct: 123685 ggatgctccacggggttcatggccacaccacg 123654
>gb|DQ206473.1| Platynereis dumerilii isolate TOA23 ribosomal protein 8 large subunit mRNA, partial cds Length = 385 Score = 40.1 bits (20), Expect = 5.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 305 ctccatggggatggtccaccgggttcatcgccacaccacg 344 ||||||| ||||| || || |||||||| ||||||||||| Sbjct: 385 ctccatgaggatgctcaacggggttcatagccacaccacg 346
>emb|AL355112.4|CNS05TCB Human chromosome 14 DNA sequence BAC R-159D23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 147454 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 360 gcccagccaccggctgtgccctgccttc 387 ||||||||||| |||| ||||||||||| Sbjct: 145679 gcccagccaccagctgcgccctgccttc 145652
>emb|AL683809.7| Mouse DNA sequence from clone RP23-440B21 on chromosome X, complete sequence Length = 213187 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tggtgggcttcccccagggc 264 |||||||||||||||||||| Sbjct: 70220 tggtgggcttcccccagggc 70201
>emb|AL352984.4|CNS05TC2 Human chromosome 14 DNA sequence BAC R-187E13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158613 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 360 gcccagccaccggctgtgccctgccttc 387 ||||||||||| |||| ||||||||||| Sbjct: 61313 gcccagccaccagctgcgccctgccttc 61286
>emb|AL669969.14| Mouse DNA sequence from clone RP23-254J18 on chromosome 11, complete sequence Length = 127045 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 gcctgcccagccaccggctg 375 |||||||||||||||||||| Sbjct: 52062 gcctgcccagccaccggctg 52081 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,898,986 Number of Sequences: 3902068 Number of extensions: 2898986 Number of successful extensions: 56928 Number of sequences better than 10.0: 139 Number of HSP's better than 10.0 without gapping: 139 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56174 Number of HSP's gapped (non-prelim): 754 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
