ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast78h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
2dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
3dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
4dbj|AK103941.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
5ref|NM_190402.1| Oryza sativa (japonica cultivar-group), predic... 46 0.084
6gb|AC144743.4| Oryza sativa (japonica cultivar-group) chromosome... 46 0.084
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
8dbj|AK105733.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
9dbj|AK072321.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
10dbj|AK066119.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
11ref|XM_463858.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
12gb|BC071261.1| Mus musculus ATPase family, AAA domain containing... 42 1.3
13ref|NM_027435.2| Mus musculus ATPase family, AAA domain containi... 42 1.3
14gb|AC113292.6| Mus musculus chromosome 15, clone RP23-418M3, com... 42 1.3
15gb|BC032211.1| Mus musculus ATPase family, AAA domain containing... 42 1.3
16gb|AY907537.1| Uncultured bacterial symbiont of Discodermia diss... 42 1.3
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
18gb|AC068135.5| Homo sapiens BAC clone RP11-764E7 from 2, complet... 42 1.3
19dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
20dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
21dbj|AK106679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
22gb|AC130657.9| Mus musculus chromosome 1, clone RP23-307H3, comp... 40 5.2
23gb|AC166973.5| Mus musculus chromosome 1, clone RP24-372J6, comp... 40 5.2
24gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.2
25gb|AC150675.2| Bos taurus BAC CH240-451M14 (Children's Hospital... 40 5.2
26ref|XM_585689.2| PREDICTED: Bos taurus similar to inner membrane... 40 5.2
27gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.2
28gb|AC132442.3| Mus musculus BAC clone RP23-240K23 from chromosom... 40 5.2
29ref|XM_537688.2| PREDICTED: Canis familiaris similar to serine c... 40 5.2
30ref|XM_731336.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.2
31gb|AC101910.20| Mus musculus chromosome 7, clone RP24-327I20, co... 40 5.2
32gb|BC111199.1| Bos taurus similar to inner membrane protein, mit... 40 5.2
33emb|AL672032.6| Human DNA sequence from clone RP11-308B5 on chro... 40 5.2
34emb|AL359703.13| Human DNA sequence from clone RP11-389N12 on ch... 40 5.2
35emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 5.2
36emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.2
37gb|AC114957.2| Homo sapiens chromosome 5 clone RP11-163G13, comp... 40 5.2
38gb|AC073118.4| Homo sapiens BAC clone RP11-609J13 from 2, comple... 40 5.2
39gb|AE004559.1| Pseudomonas aeruginosa PAO1, section 120 of 529 o... 40 5.2
40gb|AC096533.3| Homo sapiens chromosome 1 clone RP11-6B6, complet... 40 5.2
41gb|AC087241.11| Homo sapiens 12 BAC RP11-268P4 (Roswell Park Can... 40 5.2
42gb|AC154598.2| Mus musculus BAC clone RP23-356P6 from 14, comple... 40 5.2
43emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 5.2
44gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.2
45emb|AL844536.13| Mouse DNA sequence from clone RP23-22A15 on chr... 40 5.2
46emb|AL929546.8| Mouse DNA sequence from clone RP23-402K10 on chr... 40 5.2
47emb|AL672309.8| Mouse DNA sequence from clone RP23-466J17 on chr... 40 5.2 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 41       aaggtgatcaacctgcacaatatctact 68
                |||||||||| |||||||||||||||||
Sbjct: 35296777 aaggtgatcagcctgcacaatatctact 35296804



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 348      cgcagagcagcgtgccgacgacgcaggtggcgccccagatggc 390
                ||||||||||||| |||||| |||| || | ||||||||||||
Sbjct: 35297094 cgcagagcagcgtcccgacggcgcacgtcgtgccccagatggc 35297136
to top
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0031D02
          Length = 183692

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 41     aaggtgatcaacctgcacaatatctact 68
              |||||||||| |||||||||||||||||
Sbjct: 175861 aaggtgatcagcctgcacaatatctact 175888



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 348    cgcagagcagcgtgccgacgacgcaggtggcgccccagatggc 390
              ||||||||||||| |||||| |||| || | ||||||||||||
Sbjct: 176178 cgcagagcagcgtcccgacggcgcacgtcgtgccccagatggc 176220
to top
>dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0439E11
          Length = 146083

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 41    aaggtgatcaacctgcacaatatctact 68
             |||||||||| |||||||||||||||||
Sbjct: 60638 aaggtgatcagcctgcacaatatctact 60665



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 348   cgcagagcagcgtgccgacgacgcaggtggcgccccagatggc 390
             ||||||||||||| |||||| |||| || | ||||||||||||
Sbjct: 60955 cgcagagcagcgtcccgacggcgcacgtcgtgccccagatggc 60997
to top
>dbj|AK103941.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G09, full
            insert sequence
          Length = 1934

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 41   aaggtgatcaacctgcacaatatctact 68
            |||||||||| |||||||||||||||||
Sbjct: 1884 aaggtgatcagcctgcacaatatctact 1857



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 348  cgcagagcagcgtgccgacgacgcaggtggcgccccagatggc 390
            ||||||||||||| |||||| |||| || | ||||||||||||
Sbjct: 1567 cgcagagcagcgtcccgacggcgcacgtcgtgccccagatggc 1525
to top
>ref|NM_190402.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1623

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 348  cgcagagcagcgtgccgacgacgcaggtggcgccccagatggc 390
            ||||||||||||| |||||| |||| || | ||||||||||||
Sbjct: 1534 cgcagagcagcgtcccgacggcgcacgtcgtgccccagatggc 1492
to top
>gb|AC144743.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0009H09,
             complete sequence
          Length = 148740

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                         
Query: 308   agcctgccggcgaagctgcgcgaccggacgtagaggacgacgcagagcagcgtgccgacg 367
             ||||| |||||||||| ||||||||   |||| || |||  |||||||  ||| ||||||
Sbjct: 68877 agcctcccggcgaagccgcgcgacctcgcgtacagcacggtgcagagcgccgtcccgacg 68818

                                
Query: 368   acgcaggtggcgccccaga 386
              |||| |||||||||||||
Sbjct: 68817 gcgcacgtggcgccccaga 68799
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                            
Query: 308      agcctgccggcgaagctgcgcgaccggacgtagaggacgacgcagagcagcgtgccgacg 367
                ||||| |||||||||| ||||||||   |||| || |||  |||||||  ||| ||||||
Sbjct: 23243471 agcctcccggcgaagccgcgcgacctcgcgtacagcacggtgcagagcgccgtcccgacg 23243412

                                   
Query: 368      acgcaggtggcgccccaga 386
                 |||| |||||||||||||
Sbjct: 23243411 gcgcacgtggcgccccaga 23243393
to top
>dbj|AK105733.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-H09, full
            insert sequence
          Length = 2110

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                        
Query: 308  agcctgccggcgaagctgcgcgaccggacgtagaggacgacgcagagcagcgtgccgacg 367
            ||||| |||||||||| ||||||||   |||| || |||  |||||||  ||| ||||||
Sbjct: 1760 agcctcccggcgaagccgcgcgacctcgcgtacagcacggtgcagagcgccgtcccgacg 1701

                               
Query: 368  acgcaggtggcgccccaga 386
             |||| |||||||||||||
Sbjct: 1700 gcgcacgtggcgccccaga 1682
to top
>dbj|AK072321.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026C12, full
            insert sequence
          Length = 1930

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 41   aaggtgatcaacctgcacaatatctac 67
            |||||||||| ||||||||||||||||
Sbjct: 1880 aaggtgatcagcctgcacaatatctac 1854



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 348  cgcagagcagcgtgccgacgacgcaggtggcgccccagatggc 390
            ||||||||||||| |||||| |||| || | ||||||||||||
Sbjct: 1563 cgcagagcagcgtcccgacggcgcacgtcgtgccccagatggc 1521
to top
>dbj|AK066119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058N11, full
            insert sequence
          Length = 1930

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                        
Query: 308  agcctgccggcgaagctgcgcgaccggacgtagaggacgacgcagagcagcgtgccgacg 367
            ||||| |||||||||| ||||||||   |||| || |||  |||||||  ||| ||||||
Sbjct: 1616 agcctcccggcgaagccgcgcgacctcgcgtacagcacggtgcagagcgccgtcccgacg 1557

                               
Query: 368  acgcaggtggcgccccaga 386
             |||| |||||||||||||
Sbjct: 1556 gcgcacgtggcgccccaga 1538
to top
>ref|XM_463858.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1161

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 345 cgacgcagagcagcgtgccgacgac 369
           |||||||||||||||||||| ||||
Sbjct: 463 cgacgcagagcagcgtgccggcgac 439
to top
>gb|BC071261.1| Mus musculus ATPase family, AAA domain containing 2, mRNA (cDNA clone
            IMAGE:6328083), partial cds
          Length = 2297

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 10   actctttatatgcatatatat 30
            |||||||||||||||||||||
Sbjct: 1406 actctttatatgcatatatat 1426
to top
>ref|NM_027435.2| Mus musculus ATPase family, AAA domain containing 2 (Atad2), mRNA
          Length = 5683

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 10   actctttatatgcatatatat 30
            |||||||||||||||||||||
Sbjct: 4842 actctttatatgcatatatat 4862
to top
>gb|AC113292.6| Mus musculus chromosome 15, clone RP23-418M3, complete sequence
          Length = 218109

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     actctttatatgcatatatat 30
              |||||||||||||||||||||
Sbjct: 120676 actctttatatgcatatatat 120656
to top
>gb|BC032211.1| Mus musculus ATPase family, AAA domain containing 2, mRNA (cDNA clone
            IMAGE:5322451), complete cds
          Length = 2237

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 10   actctttatatgcatatatat 30
            |||||||||||||||||||||
Sbjct: 1376 actctttatatgcatatatat 1396
to top
>gb|AY907537.1| Uncultured bacterial symbiont of Discodermia dissoluta polyketide
            synthesis gene cluster, partial sequence
          Length = 124311

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 106  gatcggatcagtcaagacgaa 126
            |||||||||||||||||||||
Sbjct: 3703 gatcggatcagtcaagacgaa 3723
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 345    cgacgcagagcagcgtgccgacgac 369
              |||||||||||||||||||| ||||
Sbjct: 764470 cgacgcagagcagcgtgccggcgac 764494
to top
>gb|AC068135.5| Homo sapiens BAC clone RP11-764E7 from 2, complete sequence
          Length = 164736

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    ctctttatatgcatatatatt 31
             |||||||||||||||||||||
Sbjct: 58551 ctctttatatgcatatatatt 58531
to top
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0036E06
          Length = 137926

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 345   cgacgcagagcagcgtgccgacgac 369
             |||||||||||||||||||| ||||
Sbjct: 42601 cgacgcagagcagcgtgccggcgac 42625
to top
>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1399_H05
          Length = 147670

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 345    cgacgcagagcagcgtgccgacgac 369
              |||||||||||||||||||| ||||
Sbjct: 121365 cgacgcagagcagcgtgccggcgac 121389
to top
>dbj|AK106679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-B01, full
           insert sequence
          Length = 2106

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 345 cgacgcagagcagcgtgccgacgac 369
           |||||||||||||||||||| ||||
Sbjct: 536 cgacgcagagcagcgtgccggcgac 560
to top
>gb|AC130657.9| Mus musculus chromosome 1, clone RP23-307H3, complete sequence
          Length = 198570

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     ctctttatatgcatatatat 30
              ||||||||||||||||||||
Sbjct: 159094 ctctttatatgcatatatat 159113
to top
>gb|AC166973.5| Mus musculus chromosome 1, clone RP24-372J6, complete sequence
          Length = 146400

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ctctttatatgcatatatat 30
             ||||||||||||||||||||
Sbjct: 68414 ctctttatatgcatatatat 68433
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 352     gagcagcgtgccgacgacgc 371
               ||||||||||||||||||||
Sbjct: 1003644 gagcagcgtgccgacgacgc 1003663
to top
>gb|AC150675.2| Bos taurus  BAC CH240-451M14 (Children's Hospital Oakland Research
            Institute Bovine BAC Library (male)) complete sequence
          Length = 172241

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   tttatatgcatatatatttg 33
            ||||||||||||||||||||
Sbjct: 8605 tttatatgcatatatatttg 8624
to top
>ref|XM_585689.2| PREDICTED: Bos taurus similar to inner membrane protein,
            mitochondrial (LOC508853), partial mRNA
          Length = 2565

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  gcagcctgccggcgaagctg 325
            ||||||||||||||||||||
Sbjct: 1418 gcagcctgccggcgaagctg 1399
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 352     gagcagcgtgccgacgacgc 371
               ||||||||||||||||||||
Sbjct: 2562123 gagcagcgtgccgacgacgc 2562104
to top
>gb|AC132442.3| Mus musculus BAC clone RP23-240K23 from chromosome 10, complete sequence
          Length = 201145

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tatatgcatatatatttgca 35
              ||||||||||||||||||||
Sbjct: 122623 tatatgcatatatatttgca 122604
to top
>ref|XM_537688.2| PREDICTED: Canis familiaris similar to serine carboxypeptidase 1
            precursor protein (LOC480566), mRNA
          Length = 1958

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 13   ctttatatgcatatatattt 32
            ||||||||||||||||||||
Sbjct: 1836 ctttatatgcatatatattt 1855
to top
>ref|XM_731336.1| Plasmodium chabaudi chabaudi hypothetical protein (PC101146.00.0)
          partial mRNA
          Length = 114

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 tctttatatgcatatatatt 31
          ||||||||||||||||||||
Sbjct: 23 tctttatatgcatatatatt 42
to top
>gb|AC101910.20| Mus musculus chromosome 7, clone RP24-327I20, complete sequence
          Length = 197719

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tttatatgcatatatatttg 33
              ||||||||||||||||||||
Sbjct: 151143 tttatatgcatatatatttg 151124
to top
>gb|BC111199.1| Bos taurus similar to inner membrane protein, mitochondrial, mRNA
            (cDNA clone MGC:133830 IMAGE:8055940), complete cds
          Length = 2694

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  gcagcctgccggcgaagctg 325
            ||||||||||||||||||||
Sbjct: 1461 gcagcctgccggcgaagctg 1442
to top
>emb|AL672032.6| Human DNA sequence from clone RP11-308B5 on chromosome X Contains a
             novel gene, the 5' end of the PLAC1 gene for
             placenta-specific 1, a ribosomal protein L21 (RPL21)
             pseudogene, a ribosomal protein S7 (RPS7) pseudogene and
             the 3' end of the LOC169090 gene, complete sequence
          Length = 209317

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tatatgcatatatatttgca 35
             ||||||||||||||||||||
Sbjct: 41677 tatatgcatatatatttgca 41696
to top
>emb|AL359703.13| Human DNA sequence from clone RP11-389N12 on chromosome X, complete
             sequence
          Length = 187779

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    tatatgcatatatatttgca 35
             ||||||||||||||||||||
Sbjct: 52469 tatatgcatatatatttgca 52450
to top
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 361     gccgacgacgcaggtggcgc 380
               ||||||||||||||||||||
Sbjct: 1659387 gccgacgacgcaggtggcgc 1659406
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 352     gagcagcgtgccgacgacgc 371
               ||||||||||||||||||||
Sbjct: 1820103 gagcagcgtgccgacgacgc 1820122
to top
>gb|AC114957.2| Homo sapiens chromosome 5 clone RP11-163G13, complete sequence
          Length = 45292

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    tatatgcatatatatttgca 35
             ||||||||||||||||||||
Sbjct: 17791 tatatgcatatatatttgca 17772
to top
>gb|AC073118.4| Homo sapiens BAC clone RP11-609J13 from 2, complete sequence
          Length = 107480

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tatatgcatatatatttgca 35
              ||||||||||||||||||||
Sbjct: 105331 tatatgcatatatatttgca 105312
to top
>gb|AE004559.1| Pseudomonas aeruginosa PAO1, section 120 of 529 of the complete
            genome
          Length = 10799

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  cctcaccggcagcctgccgg 317
            ||||||||||||||||||||
Sbjct: 1664 cctcaccggcagcctgccgg 1683
to top
>gb|AC096533.3| Homo sapiens chromosome 1 clone RP11-6B6, complete sequence
          Length = 163339

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tatatgcatatatatttgca 35
             ||||||||||||||||||||
Sbjct: 13286 tatatgcatatatatttgca 13305
to top
>gb|AC087241.11| Homo sapiens 12 BAC RP11-268P4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 146000

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tatatgcatatatatttgca 35
              ||||||||||||||||||||
Sbjct: 117047 tatatgcatatatatttgca 117066
to top
>gb|AC154598.2| Mus musculus BAC clone RP23-356P6 from 14, complete sequence
          Length = 206646

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tatatgcatatatatttgca 35
              ||||||||||||||||||||
Sbjct: 114067 tatatgcatatatatttgca 114086
to top
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 11      ctctttatatgcatatatat 30
               ||||||||||||||||||||
Sbjct: 1460302 ctctttatatgcatatatat 1460283
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 352     gagcagcgtgccgacgacgc 371
               ||||||||||||||||||||
Sbjct: 2577118 gagcagcgtgccgacgacgc 2577137
to top
>emb|AL844536.13| Mouse DNA sequence from clone RP23-22A15 on chromosome 2, complete
             sequence
          Length = 245993

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tatatgcatatatatttgca 35
             ||||||||||||||||||||
Sbjct: 22783 tatatgcatatatatttgca 22802
to top
>emb|AL929546.8| Mouse DNA sequence from clone RP23-402K10 on chromosome 2, complete
             sequence
          Length = 130361

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    tatatgcatatatatttgca 35
             ||||||||||||||||||||
Sbjct: 53902 tatatgcatatatatttgca 53883
to top
>emb|AL672309.8| Mouse DNA sequence from clone RP23-466J17 on chromosome X, complete
             sequence
          Length = 81843

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tatatgcatatatatttgca 35
             ||||||||||||||||||||
Sbjct: 11038 tatatgcatatatatttgca 11057


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,039,778
Number of Sequences: 3902068
Number of extensions: 2039778
Number of successful extensions: 60494
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 59920
Number of HSP's gapped (non-prelim): 578
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top