ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast78b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 76 1e-10
2gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare str... 76 1e-10
3gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare str... 76 1e-10
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
5dbj|AK067474.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
6gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC... 68 2e-08
7gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 62 2e-06
8gb|DQ175857.1| Hordeum vulgare clone DsC28 Ds insertion site fla... 62 2e-06
9gb|DQ175832.1| Hordeum vulgare clone DsB30 Ds insertion site fla... 62 2e-06
10gb|DQ175829.1| Hordeum vulgare clone DsB25 Ds insertion site fla... 62 2e-06
11emb|AJ310639.1|HVU310639 Hordeum vulgare partial pip1 gene for p... 52 0.001
12emb|AJ300144.1|HVU300144 Hordeum vulgare srg6 gene for stress re... 50 0.006
13emb|AJ234802.1|HVU234802 Hordeum vulgare genomic DNA fragment; c... 48 0.023
14gb|AY866493.1| Hordeum vulgare subsp. spontaneum cultivar OSU6 M... 46 0.091
15gb|AY866492.1| Hordeum vulgare subsp. spontaneum cultivar OSU11 ... 46 0.091
16gb|BT018322.1| Zea mays clone EL01T0208B08.c mRNA sequence 44 0.36
17gb|AY008692.1| Hordeum vulgare transcription factor GAMyb (Gamyb... 44 0.36
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
19dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
20dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
21gb|AY866495.1| Hordeum vulgare subsp. vulgare cultivar Pane MADS... 42 1.4
22gb|AY866494.1| Hordeum vulgare subsp. vulgare cultivar Albacete ... 42 1.4
23gb|AC157650.2| Mus musculus BAC clone RP24-573N21 from chromosom... 42 1.4
24gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, comple... 42 1.4
25gb|AC121862.3| Mus musculus BAC clone RP24-110E10 from chromosom... 42 1.4
26emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
28dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
29gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, comple... 42 1.4
30gb|AC162171.7| Mus musculus chromosome 5, clone RP23-143N11, com... 40 5.6
31gb|AC166779.3| Mus musculus chromosome 18, clone RP23-399N10, co... 40 5.6
32gb|AC147621.3| Mus musculus BAC clone RP24-315M14 from chromosom... 40 5.6
33gb|AC136022.3| Mus musculus BAC clone RP24-497H18 from chromosom... 40 5.6
34gb|AC140203.2| Mus musculus BAC clone RP24-334J15 from chromosom... 40 5.6
35gb|AC146233.2| Pan troglodytes BAC clone RP43-32B21 from 7, comp... 40 5.6
36gb|AC004866.1| Homo sapiens PAC clone RP4-728H9 from 7, complete... 40 5.6
37gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete se... 40 5.6
38emb|AL671990.5| Mouse DNA sequence from clone RP23-41A24 on chro... 40 5.6
39gb|AC105151.8| Mus musculus chromosome 1, clone RP23-28N2, compl... 40 5.6
40gb|AC159643.2| Mus musculus BAC clone RP23-384H10 from chromosom... 40 5.6
41gb|AC159622.2| Mus musculus BAC clone RP24-289D12 from chromosom... 40 5.6
42gb|AY641411.1| Hordeum vulgare subsp. vulgare Rph15.1 (Rph15.1) ... 40 5.6
43gb|AY641406.1| Hordeum vulgare subsp. vulgare putative NBS-LRR p... 40 5.6
44dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
45dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
46dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
47gb|AC117578.9| Mus musculus chromosome 5, clone RP23-36I22, comp... 40 5.6
48dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
49dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
50dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
51dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
52emb|BX005164.9| Mouse DNA sequence from clone RP23-257P3 on chro... 40 5.6
53gb|AC111036.6| Mus musculus chromosome 18, clone RP24-80E15, com... 40 5.6
54gb|AC164400.7| Mus musculus chromosome 1, clone RP23-379N20, com... 40 5.6
55gb|AC139186.4| Mus musculus BAC clone RP24-92D20 from 8, complet... 40 5.6 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                            
Query: 353      cttcaatgaactggcgtatgctgtctttggtcacagcctggcctctagtcatttccttca 412
                |||||||||| || ||||||||||| ||||| |||||||| ||||| |||||||||||||
Sbjct: 11187619 cttcaatgaattgccgtatgctgtccttggtgacagcctgccctctggtcatttccttca 11187560

                      
Query: 413      gtttct 418
                | ||||
Sbjct: 11187559 gcttct 11187554



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 217      gctcacttgatcttaaatccagatttcaggtcaaccac 254
                ||||||| |||||||||||||||||| || ||||||||
Sbjct: 11187755 gctcactcgatcttaaatccagattttagatcaaccac 11187718
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>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0011G21, from chromosome 3, complete sequence
          Length = 142401

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                          
Query: 353    cttcaatgaactggcgtatgctgtctttggtcacagcctggcctctagtcatttccttca 412
              |||||||||| || ||||||||||| ||||| |||||||| ||||| |||||||||||||
Sbjct: 100976 cttcaatgaattgccgtatgctgtccttggtgacagcctgccctctggtcatttccttca 100917

                    
Query: 413    gtttct 418
              | ||||
Sbjct: 100916 gcttct 100911



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 217    gctcacttgatcttaaatccagatttcaggtcaaccac 254
              ||||||| |||||||||||||||||| || ||||||||
Sbjct: 101112 gctcactcgatcttaaatccagattttagatcaaccac 101075
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>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0085H08, from chromosome 3, complete sequence
          Length = 126708

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                         
Query: 353   cttcaatgaactggcgtatgctgtctttggtcacagcctggcctctagtcatttccttca 412
             |||||||||| || ||||||||||| ||||| |||||||| ||||| |||||||||||||
Sbjct: 93110 cttcaatgaattgccgtatgctgtccttggtgacagcctgccctctggtcatttccttca 93169

                   
Query: 413   gtttct 418
             | ||||
Sbjct: 93170 gcttct 93175



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 217   gctcacttgatcttaaatccagatttcaggtcaaccac 254
             ||||||| |||||||||||||||||| || ||||||||
Sbjct: 92974 gctcactcgatcttaaatccagattttagatcaaccac 93011
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                            
Query: 353      cttcaatgaactggcgtatgctgtctttggtcacagcctggcctctagtcatttccttca 412
                |||||||||| || ||||||||||| ||||| |||||||| ||||| |||||||||||||
Sbjct: 11184382 cttcaatgaattgccgtatgctgtccttggtgacagcctgccctctggtcatttccttca 11184323

                      
Query: 413      gtttct 418
                | ||||
Sbjct: 11184322 gcttct 11184317



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 217      gctcacttgatcttaaatccagatttcaggtcaaccac 254
                ||||||| |||||||||||||||||| || ||||||||
Sbjct: 11184518 gctcactcgatcttaaatccagattttagatcaaccac 11184481
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>dbj|AK067474.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107G14, full
            insert sequence
          Length = 2090

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                        
Query: 353  cttcaatgaactggcgtatgctgtctttggtcacagcctggcctctagtcatttccttca 412
            |||||||||| || ||||||||||| ||||| |||||||| ||||| |||||||||||||
Sbjct: 1639 cttcaatgaattgccgtatgctgtccttggtgacagcctgccctctggtcatttccttca 1580

                  
Query: 413  gtttct 418
            | ||||
Sbjct: 1579 gcttct 1574



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 217  gctcacttgatcttaaatccagatttcaggtcaaccac 254
            ||||||| |||||||||||||||||| || ||||||||
Sbjct: 1775 gctcactcgatcttaaatccagattttagatcaaccac 1738
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>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13,
             complete sequence
          Length = 102842

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                         
Query: 85    aaataaatatagttgacgagaactaatctagttttctccaactacaattatttaggtata 144
             |||||| | |||||||  ||||||| ||||||||| | ||| ||||||||||||| ||||
Sbjct: 37911 aaataattgtagttgaaaagaactagtctagtttttttcaattacaattatttagatata 37970

                       
Query: 145   gagggagtat 154
             ||||||||||
Sbjct: 37971 gagggagtat 37980
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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                         
Query: 79    atacctaaataaatatagttgacgagaactaatctagttttctccaactacaattattta 138
             |||||||||||| |||||||||  | ||||| ||||||||| || ||||| |||||||||
Sbjct: 20322 atacctaaataattatagttgaaaaaaactagtctagttttttctaactataattattta 20263

                            
Query: 139   ggtatagagggagta 153
             | || | ||||||||
Sbjct: 20262 gataaaaagggagta 20248



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 112   ctagttttctccaactacaattatttaggtata 144
             |||||||| | |||||| |||||||||||||||
Sbjct: 20291 ctagtttttttcaactataattatttaggtata 20323
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>gb|DQ175857.1| Hordeum vulgare clone DsC28 Ds insertion site flanking region
           genomic sequence
          Length = 838

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 79  atacctaaataaatatagttgacgagaactaatctagttttctccaactacaattattta 138
           |||||||||||| |||||||||  | ||||| ||||||||| || ||||| |||||||||
Sbjct: 442 atacctaaataattatagttgaaaaaaactagtctagttttttctaactataattattta 501

                          
Query: 139 ggtatagagggagta 153
           | || | ||||||||
Sbjct: 502 gataaaaagggagta 516



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 112 ctagttttctccaactacaattatttaggtata 144
           |||||||| | |||||| |||||||||||||||
Sbjct: 473 ctagtttttttcaactataattatttaggtata 441
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>gb|DQ175832.1| Hordeum vulgare clone DsB30 Ds insertion site flanking region
           genomic sequence
          Length = 806

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 79  atacctaaataaatatagttgacgagaactaatctagttttctccaactacaattattta 138
           |||||||||||| |||||||||  | ||||| ||||||||| || ||||| |||||||||
Sbjct: 543 atacctaaataattatagttgaaaaaaactagtctagttttttctaactataattattta 602

                          
Query: 139 ggtatagagggagta 153
           | || | ||||||||
Sbjct: 603 gataaaaagggagta 617



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 112 ctagttttctccaactacaattatttaggtata 144
           |||||||| | |||||| |||||||||||||||
Sbjct: 574 ctagtttttttcaactataattatttaggtata 542
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>gb|DQ175829.1| Hordeum vulgare clone DsB25 Ds insertion site flanking region
           genomic sequence
          Length = 892

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                       
Query: 79  atacctaaataaatatagttgacgagaactaatctagttttctccaactacaattattta 138
           |||||||||||| |||||||||  | ||||| ||||||||| || ||||| |||||||||
Sbjct: 282 atacctaaataattatagttgaaaaaaactagtctagttttttctaactataattattta 223

                          
Query: 139 ggtatagagggagta 153
           | || | ||||||||
Sbjct: 222 gataaaaagggagta 208



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 112 ctagttttctccaactacaattatttaggtata 144
           |||||||| | |||||| |||||||||||||||
Sbjct: 251 ctagtttttttcaactataattatttaggtata 283
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>emb|AJ310639.1|HVU310639 Hordeum vulgare partial pip1 gene for putative aquaporin
          Length = 1291

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 80   tacctaaataaatatagttgacgagaactaatctagttttctccaactacaattatttag 139
            ||||||||||| | |||||||  |||||||||| | || || ||| ||||||||||||||
Sbjct: 1190 tacctaaataattgtagttgagaagaactaatccaattctcgccagctacaattatttag 1131

                          
Query: 140  gtatagagggagta 153
            | | | ||||||||
Sbjct: 1130 gaacacagggagta 1117



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  caactacaattatttaggta 142
            ||||||||||||||||||||
Sbjct: 1171 caactacaattatttaggta 1190
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>emb|AJ300144.1|HVU300144 Hordeum vulgare srg6 gene for stress responsive gene protein 6, exons
            1-11, cultivar Morex
          Length = 4197

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 102  gagaactaatctagttttctccaactacaattatttaggtatagagggagtat 154
            ||||||||||||||||  | ||||| |||| |||||||| | |||||||||||
Sbjct: 1532 gagaactaatctagttccccccaacaacaagtatttaggaacagagggagtat 1480
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>emb|AJ234802.1|HVU234802 Hordeum vulgare genomic DNA fragment; clone MWG2141.rev
          Length = 315

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                       
Query: 74  cctccatacctaaataaatatagttgacgagaactaatctagttttctccaactacaatt 133
           ||||||||||  ||||| | ||||||   |||||||| |||||| || ||| ||||||||
Sbjct: 267 cctccataccgtaataattgtagttgggcagaactaaactagttctccccagctacaatt 208

                               
Query: 134 atttaggtatagagggagta 153
           |||  |||| ||||||||||
Sbjct: 207 attatggtacagagggagta 188
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>gb|AY866493.1| Hordeum vulgare subsp. spontaneum cultivar OSU6 MADS-box protein
           HvBM5A (BM5A) gene, intron 1
          Length = 2588

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 127 tacaattatttaggtatagagggagta 153
           |||||||||||||||||||||| ||||
Sbjct: 483 tacaattatttaggtatagaggaagta 509
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>gb|AY866492.1| Hordeum vulgare subsp. spontaneum cultivar OSU11 Caesarea 26-24
           MADS-box protein HvBM5A (BM5A) gene, intron 1
          Length = 2588

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 127 tacaattatttaggtatagagggagta 153
           |||||||||||||||||||||| ||||
Sbjct: 483 tacaattatttaggtatagaggaagta 509
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>gb|BT018322.1| Zea mays clone EL01T0208B08.c mRNA sequence
          Length = 1455

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 216  agctcacttgatcttaaatccagatt 241
            |||||||||||||| |||||||||||
Sbjct: 1190 agctcacttgatctgaaatccagatt 1165
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>gb|AY008692.1| Hordeum vulgare transcription factor GAMyb (Gamyb) gene, complete cds
          Length = 6228

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 80   tacctaaataaatatagttgacgagaacta 109
            ||||||||||| ||||||||| ||||||||
Sbjct: 3045 tacctaaataattatagttgaggagaacta 3016
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 128      acaattatttaggtatagagggagta 153
                ||||||||||||| ||||||||||||
Sbjct: 26628720 acaattatttagggatagagggagta 26628695



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 129      caattatttaggtatagagggagta 153
                ||||||||||||||| |||||||||
Sbjct: 28105261 caattatttaggtatggagggagta 28105285
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>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1340_C08
          Length = 192167

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 128    acaattatttaggtatagagggagta 153
              ||||||||||||| ||||||||||||
Sbjct: 173991 acaattatttagggatagagggagta 173966
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>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0524G08
          Length = 146690

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 128   acaattatttaggtatagagggagta 153
             ||||||||||||| ||||||||||||
Sbjct: 46324 acaattatttagggatagagggagta 46299
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>gb|AY866495.1| Hordeum vulgare subsp. vulgare cultivar Pane MADS-box protein
           HvBM5A (BM5A) gene, intron 1
          Length = 1177

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 127 tacaattatttaggtatagag 147
           |||||||||||||||||||||
Sbjct: 483 tacaattatttaggtatagag 503
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>gb|AY866494.1| Hordeum vulgare subsp. vulgare cultivar Albacete MADS-box protein
           HvBM5A (BM5A) gene, intron 1
          Length = 1177

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 127 tacaattatttaggtatagag 147
           |||||||||||||||||||||
Sbjct: 483 tacaattatttaggtatagag 503
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>gb|AC157650.2| Mus musculus BAC clone RP24-573N21 from chromosome 14, complete
             sequence
          Length = 186859

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 277   ttctctgcctctccagtgtaa 297
             |||||||||||||||||||||
Sbjct: 30003 ttctctgcctctccagtgtaa 29983
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>gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, complete sequence
          Length = 255921

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 278    tctctgcctctccagtgtaagagtg 302
              ||||||||||||||||| |||||||
Sbjct: 143356 tctctgcctctccagtgcaagagtg 143332
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>gb|AC121862.3| Mus musculus BAC clone RP24-110E10 from chromosome 14, complete
             sequence
          Length = 178501

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 277   ttctctgcctctccagtgtaa 297
             |||||||||||||||||||||
Sbjct: 14116 ttctctgcctctccagtgtaa 14136
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>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17,
             complete sequence
          Length = 167269

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 74    cctccatacctaaataaatatagtt 98
             ||||||| |||||||||||||||||
Sbjct: 40466 cctccatccctaaataaatatagtt 40490
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 74       cctccatacctaaataaatatagtt 98
                ||||||| |||||||||||||||||
Sbjct: 27877613 cctccatccctaaataaatatagtt 27877637
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>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0450A04
          Length = 162545

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 129   caattatttaggtatagagggagta 153
             ||||||||||||||| |||||||||
Sbjct: 88557 caattatttaggtatggagggagta 88581
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>gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, complete sequence
          Length = 183177

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 369   tatgctgtctttggtcacagc 389
             |||||||||||||||||||||
Sbjct: 55281 tatgctgtctttggtcacagc 55261
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>gb|AC162171.7| Mus musculus chromosome 5, clone RP23-143N11, complete sequence
          Length = 229553

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 272    ccagattctctgcctctccagtgt 295
              |||||||||| |||||||||||||
Sbjct: 128503 ccagattctcagcctctccagtgt 128526
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>gb|AC166779.3| Mus musculus chromosome 18, clone RP23-399N10, complete sequence
          Length = 200851

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 272    ccagattctctgcctctccagtgt 295
              ||||| ||||||||||||||||||
Sbjct: 140450 ccagactctctgcctctccagtgt 140473
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>gb|AC147621.3| Mus musculus BAC clone RP24-315M14 from chromosome Y, complete sequence
          Length = 166529

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   tttctccaactacaattatttagg 140
             |||||||||||||||| |||||||
Sbjct: 70971 tttctccaactacaatgatttagg 70994
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>gb|AC136022.3| Mus musculus BAC clone RP24-497H18 from chromosome 8, complete sequence
          Length = 165677

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    attctctgcctctccagtgt 295
              ||||||||||||||||||||
Sbjct: 154830 attctctgcctctccagtgt 154811
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>gb|AC140203.2| Mus musculus BAC clone RP24-334J15 from chromosome Y, complete sequence
          Length = 159604

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   tttctccaactacaattatttagg 140
             |||||||||||||||| |||||||
Sbjct: 25680 tttctccaactacaatgatttagg 25703
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>gb|AC146233.2| Pan troglodytes BAC clone RP43-32B21 from 7, complete sequence
          Length = 160147

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   aaccacattccaaatatttg 268
             ||||||||||||||||||||
Sbjct: 51175 aaccacattccaaatatttg 51156
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>gb|AC004866.1| Homo sapiens PAC clone RP4-728H9 from 7, complete sequence
          Length = 138102

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  aaccacattccaaatatttg 268
            ||||||||||||||||||||
Sbjct: 6751 aaccacattccaaatatttg 6732
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>gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete sequence
          Length = 132702

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 248    caaccacattccaaatatttgcag 271
              ||||| ||||||||||||||||||
Sbjct: 103675 caaccgcattccaaatatttgcag 103652
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>emb|AL671990.5| Mouse DNA sequence from clone RP23-41A24 on chromosome X, complete
             sequence
          Length = 204483

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   agtcatttccttcagtttct 418
             ||||||||||||||||||||
Sbjct: 23041 agtcatttccttcagtttct 23060
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>gb|AC105151.8| Mus musculus chromosome 1, clone RP23-28N2, complete sequence
          Length = 270578

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    agtcatttccttcagtttct 418
              ||||||||||||||||||||
Sbjct: 168677 agtcatttccttcagtttct 168696
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>gb|AC159643.2| Mus musculus BAC clone RP23-384H10 from chromosome 12, complete
            sequence
          Length = 200939

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 272  ccagattctctgcctctccagtgt 295
            |||||||||| |||||||||||||
Sbjct: 5866 ccagattctcagcctctccagtgt 5843
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>gb|AC159622.2| Mus musculus BAC clone RP24-289D12 from chromosome 12, complete
             sequence
          Length = 174662

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 272   ccagattctctgcctctccagtgt 295
             |||||||||| |||||||||||||
Sbjct: 20650 ccagattctcagcctctccagtgt 20673
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>gb|AY641411.1| Hordeum vulgare subsp. vulgare Rph15.1 (Rph15.1) pseudogene, complete
            cds
          Length = 15688

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                    
Query: 84   taaataaatatagttgacgagaactaatctagttttctccaactacaattatttag 139
            ||||||| ||||||||   |||||||  |||||| || | ||||||||||||||||
Sbjct: 2080 taaataattatagttgggtagaactagactagttctccctaactacaattatttag 2135
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>gb|AY641406.1| Hordeum vulgare subsp. vulgare putative NBS-LRR protein-like gene,
            complete sequence
          Length = 3944

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 84   taaataaatatagttgacgagaactaatctagttttctccaactacaattatttag 139
            ||||||| ||||||||   |||||||  |||||| || | ||||||||||||||||
Sbjct: 1862 taaataattatagttgggtagaactagactagttctccctaactacaattatttag 1807
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 133      tatttaggtatagagggagtatga 156
                |||||| |||||||||||||||||
Sbjct: 20502183 tatttaagtatagagggagtatga 20502206
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 133      tatttaggtatagagggagtatga 156
                |||||||| |||||||||||||||
Sbjct: 19104009 tatttagggatagagggagtatga 19103986
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 132      ttatttaggtatagagggagtatg 155
                ||||||||| ||||||||||||||
Sbjct: 20291827 ttatttagggatagagggagtatg 20291850
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>gb|AC117578.9| Mus musculus chromosome 5, clone RP23-36I22, complete sequence
          Length = 213371

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 272   ccagattctctgcctctccagtgt 295
             |||||||||| |||||||||||||
Sbjct: 18265 ccagattctcagcctctccagtgt 18242
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>dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0026J14
          Length = 163496

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   ttatttaggtatagagggagtatg 155
             ||||||||| ||||||||||||||
Sbjct: 57860 ttatttagggatagagggagtatg 57883
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>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1254_E07
          Length = 124028

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   tatttaggtatagagggagtatga 156
             |||||| |||||||||||||||||
Sbjct: 19830 tatttaagtatagagggagtatga 19853
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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0415B12
          Length = 157419

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 133  tatttaggtatagagggagtatga 156
            |||||||| |||||||||||||||
Sbjct: 2258 tatttagggatagagggagtatga 2235
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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 133    tatttaggtatagagggagtatga 156
              |||||||| |||||||||||||||
Sbjct: 109530 tatttagggatagagggagtatga 109507
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>emb|BX005164.9| Mouse DNA sequence from clone RP23-257P3 on chromosome X, complete
             sequence
          Length = 168756

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   ccagattctctgcctctcca 291
             ||||||||||||||||||||
Sbjct: 80693 ccagattctctgcctctcca 80674
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>gb|AC111036.6| Mus musculus chromosome 18, clone RP24-80E15, complete sequence
          Length = 216052

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 272   ccagattctctgcctctccagtgt 295
             ||||| ||||||||||||||||||
Sbjct: 81688 ccagactctctgcctctccagtgt 81665
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>gb|AC164400.7| Mus musculus chromosome 1, clone RP23-379N20, complete sequence
          Length = 197648

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    agtcatttccttcagtttct 418
              ||||||||||||||||||||
Sbjct: 142517 agtcatttccttcagtttct 142498
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>gb|AC139186.4| Mus musculus BAC clone RP24-92D20 from 8, complete sequence
          Length = 206436

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    attctctgcctctccagtgt 295
              ||||||||||||||||||||
Sbjct: 174624 attctctgcctctccagtgt 174643


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,075,141
Number of Sequences: 3902068
Number of extensions: 4075141
Number of successful extensions: 72186
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71897
Number of HSP's gapped (non-prelim): 289
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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