>emb|CR769776.8| Human DNA sequence from clone RP11-793G16 on chromosome 9 Contains three
novel pseudogenes, the gene for a novel protein similar to
ankyrin repeat domain 20A (ANKRD20A), the gene for a novel
protein similar to Ankyrin repeat domain protein 18A
(LOC441424), a pseudogene similar to part of cytochrome
P450 family protein, a novel zinc finger pseudogene and a
CpG island, complete sequence
Length = 161157
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 280 aacacaaaaaggaaaccaca 299
||||||||||||||||||||
Sbjct: 130960 aacacaaaaaggaaaccaca 130979
>emb|BX664718.7| Human DNA sequence from clone RP11-175I6 on chromosome 9 Conatins a
pseudogene similar to part of fibroblast growth factor 7
(keratinocyte growth factor) (FGF7), two novel pseudogenes,
a pseudogene similar to part of G protein-coupled receptor
116 (GPR116), a novel gene and a pseudogene similar to part
of meprin A, alpha (PABA peptide hydrolase) (MEP1A),
complete sequence
Length = 167646
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 280 aacacaaaaaggaaaccaca 299
||||||||||||||||||||
Sbjct: 166770 aacacaaaaaggaaaccaca 166751
>emb|CR848007.6| Human DNA sequence from clone RP11-115C9 on chromosome 9 Contains a
calponin 2 (CNN2) pseudogene, a novel zinc finger
pseudogene, a pseudogene similar to part of cytochrome
P450, subfamily IVF, a chromosome 2 open reading frame 14
(C2orf14) pseudogene, a pseudogene similar to part of
sorting nexin associated golgi protein 1 (SNAG1), a
melanoma antigen (LOC51152) pseudogene, four novel
pseudogenes and an ankyrin repeat domain 20A (ANKRD20A)
pseudogene, complete sequence
Length = 149891
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 280 aacacaaaaaggaaaccaca 299
||||||||||||||||||||
Sbjct: 145418 aacacaaaaaggaaaccaca 145437
>emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on chromosome 9 Contains three
novel pseudogenes, a pseudogene similar to part of meprin
A, alpha (PABA peptide hydrolase) (MEP1A), a pseudogene
similar to part of G protein-coupled receptor 116 (GPR116),
two novel genes, the 5' end of a novel gene similar to
ankyrin repeat domain 20A (ANKRD20A) and three CpG islands,
complete sequence
Length = 165886
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 280 aacacaaaaaggaaaccaca 299
||||||||||||||||||||
Sbjct: 130697 aacacaaaaaggaaaccaca 130678
>emb|BX649567.3| Human DNA sequence from clone RP11-195B21 on chromosome 9 Contains a
novel pseudogene, the gene for a novel protein similar to
ankyrin repeat domain 20A (ANKRD20A), a novel gene and a
CpG island, complete sequence
Length = 99502
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 280 aacacaaaaaggaaaccaca 299
||||||||||||||||||||
Sbjct: 14856 aacacaaaaaggaaaccaca 14837
>emb|AL513478.10| Human DNA sequence from clone RP11-327I22 on chromosome 9 Contains a
pseudogene similar to part of sorting nexin associated
golgi protein 1 (SNAG1), the ANKRD20A gene for ankyrin
repeat domain 20A, five novel genes, a pseudogene similar
to part of eprin A, alpha (PABA peptide hydrolase) (MEP1A)
and a CpG island, complete sequence
Length = 180498
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 280 aacacaaaaaggaaaccaca 299
||||||||||||||||||||
Sbjct: 123782 aacacaaaaaggaaaccaca 123801
>emb|AL391839.9| Human DNA sequence from clone RP11-135A24 on chromosome 10 Contains the
5' end of the EPC1 gene for enhancer of polycomb homolog 1,
(Drosophila), the 5' end of the gene for a novel protein
(FLJ32762) (FLJ25419), two novel genes and a CpG island,
complete sequence
Length = 162591
Score = 40.1 bits (20), Expect = 6.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 tattcctagtaagcatccatgtcc 80
||||||||||||| ||||||||||
Sbjct: 145955 tattcctagtaagaatccatgtcc 145978
>emb|AL121755.23|HSDJ680N4 Human DNA sequence from clone RP4-680N4 on chromosome 20 Contains the
3' end of the CDS2 gene for CDP-diacylglycerol synthase
(phosphatidate cytidylyltransferase) 2, the gene for a
novel protein similar to ubiquitin-conjugating enzyme E2D
3 (UBC4/5 homolog, yeast) (UBE2D3), the GPR73L1 gene for G
protein-coupled receptor 73-like 1 (prokineticin receptor
2, PKR2, GPR73b) and a CpG island, complete sequence
Length = 143892
Score = 40.1 bits (20), Expect = 6.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 111 actctgagaattattcatggcatg 134
|||||||||| |||||||||||||
Sbjct: 86343 actctgagaagtattcatggcatg 86320
>emb|BX649563.5| Human DNA sequence from clone RP11-213O5 on chromosome 9 Contains a
pseudogene similar to part of a novel protein
(DKFZp434A171), a pseudogene similar to part of meprin A,
alpha (PABA peptide hydrolase) (MEP1A), a pseudogene
similar to part of a novel transmembrane receptor protein
and two novel pseudogenes, complete sequence
Length = 189495
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 280 aacacaaaaaggaaaccaca 299
||||||||||||||||||||
Sbjct: 29390 aacacaaaaaggaaaccaca 29409
>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial
variable region, strain 129/Sv
Length = 1382053
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 348 tctctttcttcttcttgctc 367
||||||||||||||||||||
Sbjct: 1074405 tctctttcttcttcttgctc 1074386
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,965,575
Number of Sequences: 3902068
Number of extensions: 4965575
Number of successful extensions: 99332
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98887
Number of HSP's gapped (non-prelim): 445
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)