ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast78a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC024329.9| Homo sapiens, clone RP11-30P9, complete sequence 48 0.025
2gb|AC023880.5|AC023880 Homo sapiens PAC clone RP5-999D10 from 7,... 44 0.39
3gb|AC147628.4| Mus musculus BAC clone RP24-476D20 from chromosom... 42 1.6
4emb|Z68132.1|CEF09C8 Caenorhabditis elegans Cosmid F09C8, comple... 42 1.6
5gb|AC102549.6| Mus musculus chromosome 18, clone RP23-138E12, co... 42 1.6
6gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxyge... 42 1.6
7gb|AC147641.3| Mus musculus BAC clone RP23-43L22 from 14, comple... 42 1.6
8dbj|AP004468.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 1.6
9gb|AC136976.5| Mus musculus BAC clone RP23-362K12 from chromosom... 40 6.1
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.1
11emb|CR769776.8| Human DNA sequence from clone RP11-793G16 on chr... 40 6.1
12emb|BX664718.7| Human DNA sequence from clone RP11-175I6 on chro... 40 6.1
13emb|CR848007.6| Human DNA sequence from clone RP11-115C9 on chro... 40 6.1
14emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on ch... 40 6.1
15emb|BX649567.3| Human DNA sequence from clone RP11-195B21 on chr... 40 6.1
16emb|AL513478.10| Human DNA sequence from clone RP11-327I22 on ch... 40 6.1
17emb|AL391839.9| Human DNA sequence from clone RP11-135A24 on chr... 40 6.1
18emb|AL121755.23|HSDJ680N4 Human DNA sequence from clone RP4-680N... 40 6.1
19gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genom... 40 6.1
20gb|AC073553.5| Mus musculus strain C57BL/6J chromosome 12 clone ... 40 6.1
21emb|BX649563.5| Human DNA sequence from clone RP11-213O5 on chro... 40 6.1
22gb|AC084864.4| Homo sapiens chromosome 7 clone RP11-738B7, compl... 40 6.1
23gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0... 40 6.1
24gb|AC084865.3| Homo sapiens chromosome 7 clone RP11-437L1, compl... 40 6.1
25gb|AC090887.3| Mus musculus strain C57BL/6J clone RP23-404D8, co... 40 6.1
26dbj|AK160437.1| Mus musculus 10 day old male pancreas cDNA, RIKE... 40 6.1
27gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 6.1
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
29dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
30dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
31dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
32dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
34gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.1
35emb|BX276117.5| Zebrafish DNA sequence from clone CH211-112K18 i... 40 6.1
36dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
37dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
38dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
39emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chr... 40 6.1
40dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
41dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
42gb|AE001439.1| Helicobacter pylori J99, complete genome 40 6.1
43gb|AC140346.4| Mus musculus BAC clone RP24-260I8 from 16, comple... 40 6.1
44emb|BX537934.1|HSM806056 Homo sapiens mRNA; cDNA DKFZp686E0831 (... 40 6.1
45gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
46gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
47emb|AL954828.3|CNS08CD4 Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.1
48emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus co... 40 6.1

>gb|AC024329.9| Homo sapiens, clone RP11-30P9, complete sequence
          Length = 158921

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 276   accaaacacaaaaaggaaaccacaagaaatga 307
             |||| ||||||||||||||||||| |||||||
Sbjct: 72280 accacacacaaaaaggaaaccacatgaaatga 72249



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>gb|AC023880.5|AC023880 Homo sapiens PAC clone RP5-999D10 from 7, complete sequence
          Length = 90422

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 133   tggaatcttactactgtttgctggat 158
             |||||| |||||||||||||||||||
Sbjct: 43449 tggaatattactactgtttgctggat 43424



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>gb|AC147628.4| Mus musculus BAC clone RP24-476D20 from chromosome 14, complete sequence
          Length = 170642

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 269    taatataaccaaacacaaaaa 289
              |||||||||||||||||||||
Sbjct: 140589 taatataaccaaacacaaaaa 140569



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>emb|Z68132.1|CEF09C8 Caenorhabditis elegans Cosmid F09C8, complete sequence
          Length = 30140

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 291   gaaaccacaagaaatgacgaa 311
             |||||||||||||||||||||
Sbjct: 28321 gaaaccacaagaaatgacgaa 28301



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>gb|AC102549.6| Mus musculus chromosome 18, clone RP23-138E12, complete sequence
          Length = 172181

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   atcttactactgtttgctgga 157
             |||||||||||||||||||||
Sbjct: 45958 atcttactactgtttgctgga 45978



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>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3),
              anthocyanin biosynthesis regulatory protein Pl1_B73
              (Z576C20.4), putative growth-regulating factor 1
              (Z576C20.6), and putative aminoalcoholphosphotransferase
              (Z576C20.14) genes, complete cds; and putative receptor
              protein kinase (Z576C20.21) gene, partial cds
          Length = 155173

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     tgcatgcattgcattgcatgc 49
              |||||||||||||||||||||
Sbjct: 110103 tgcatgcattgcattgcatgc 110083



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>gb|AC147641.3| Mus musculus BAC clone RP23-43L22 from 14, complete sequence
          Length = 247999

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 269   taatataaccaaacacaaaaa 289
             |||||||||||||||||||||
Sbjct: 22797 taatataaccaaacacaaaaa 22777



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>dbj|AP004468.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09A24, TM0003,
             complete sequence
          Length = 88828

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 399   ttgacatcctctcatgtcgat 419
             |||||||||||||||||||||
Sbjct: 55096 ttgacatcctctcatgtcgat 55076



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>gb|AC136976.5| Mus musculus BAC clone RP23-362K12 from chromosome 13, complete sequence
          Length = 147695

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    tctctttcttcttcttgctc 367
              ||||||||||||||||||||
Sbjct: 115188 tctctttcttcttcttgctc 115207



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 26      ccgtgcatgcattgcattgcatgc 49
               ||||||||||||||| ||||||||
Sbjct: 9587471 ccgtgcatgcattgcgttgcatgc 9587448



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>emb|CR769776.8| Human DNA sequence from clone RP11-793G16 on chromosome 9 Contains three
              novel pseudogenes, the gene for a novel protein similar to
              ankyrin repeat domain 20A (ANKRD20A), the gene for a  novel
              protein similar to Ankyrin repeat domain protein 18A
              (LOC441424), a pseudogene similar to part of cytochrome
              P450 family protein, a novel zinc finger pseudogene and a
              CpG island, complete sequence
          Length = 161157

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    aacacaaaaaggaaaccaca 299
              ||||||||||||||||||||
Sbjct: 130960 aacacaaaaaggaaaccaca 130979



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>emb|BX664718.7| Human DNA sequence from clone RP11-175I6 on chromosome 9 Conatins a
              pseudogene similar to part of fibroblast growth factor 7
              (keratinocyte growth factor) (FGF7), two novel pseudogenes,
              a pseudogene similar to part of G protein-coupled receptor
              116 (GPR116), a novel gene and a pseudogene similar to part
              of meprin A, alpha (PABA peptide hydrolase) (MEP1A),
              complete sequence
          Length = 167646

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    aacacaaaaaggaaaccaca 299
              ||||||||||||||||||||
Sbjct: 166770 aacacaaaaaggaaaccaca 166751



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>emb|CR848007.6| Human DNA sequence from clone RP11-115C9 on chromosome 9 Contains a
              calponin 2 (CNN2) pseudogene, a novel zinc finger
              pseudogene, a pseudogene similar to part of cytochrome
              P450, subfamily IVF, a chromosome 2 open reading frame 14
              (C2orf14) pseudogene, a pseudogene similar to part of
              sorting nexin associated golgi protein 1 (SNAG1), a
              melanoma antigen (LOC51152) pseudogene, four novel
              pseudogenes and an ankyrin repeat domain 20A (ANKRD20A)
              pseudogene, complete sequence
          Length = 149891

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    aacacaaaaaggaaaccaca 299
              ||||||||||||||||||||
Sbjct: 145418 aacacaaaaaggaaaccaca 145437



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>emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on chromosome 9 Contains three
              novel pseudogenes, a pseudogene similar to part of meprin
              A, alpha (PABA peptide hydrolase) (MEP1A), a pseudogene
              similar to part of G protein-coupled receptor 116 (GPR116),
              two novel genes, the 5' end of a novel gene similar to
              ankyrin repeat domain 20A (ANKRD20A) and three CpG islands,
              complete sequence
          Length = 165886

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    aacacaaaaaggaaaccaca 299
              ||||||||||||||||||||
Sbjct: 130697 aacacaaaaaggaaaccaca 130678



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>emb|BX649567.3| Human DNA sequence from clone RP11-195B21 on chromosome 9 Contains a
             novel pseudogene, the gene for a novel protein similar to
             ankyrin repeat domain 20A (ANKRD20A), a novel gene and a
             CpG island, complete sequence
          Length = 99502

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   aacacaaaaaggaaaccaca 299
             ||||||||||||||||||||
Sbjct: 14856 aacacaaaaaggaaaccaca 14837



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>emb|AL513478.10| Human DNA sequence from clone RP11-327I22 on chromosome 9 Contains a
              pseudogene similar to part of sorting nexin associated
              golgi protein 1 (SNAG1), the ANKRD20A gene for ankyrin
              repeat domain 20A, five novel genes, a pseudogene similar
              to part of eprin A, alpha (PABA peptide hydrolase) (MEP1A)
              and a CpG island, complete sequence
          Length = 180498

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    aacacaaaaaggaaaccaca 299
              ||||||||||||||||||||
Sbjct: 123782 aacacaaaaaggaaaccaca 123801



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>emb|AL391839.9| Human DNA sequence from clone RP11-135A24 on chromosome 10 Contains the
              5' end of the EPC1 gene for enhancer of polycomb homolog 1,
              (Drosophila), the 5' end of the gene for a novel protein
              (FLJ32762) (FLJ25419), two novel genes and a CpG island,
              complete sequence
          Length = 162591

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 57     tattcctagtaagcatccatgtcc 80
              ||||||||||||| ||||||||||
Sbjct: 145955 tattcctagtaagaatccatgtcc 145978



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>emb|AL121755.23|HSDJ680N4 Human DNA sequence from clone RP4-680N4 on chromosome 20 Contains the
             3' end of the CDS2 gene for CDP-diacylglycerol synthase
             (phosphatidate cytidylyltransferase) 2, the gene for a
             novel protein similar to ubiquitin-conjugating enzyme E2D
             3 (UBC4/5 homolog, yeast) (UBE2D3), the GPR73L1 gene for G
             protein-coupled receptor 73-like 1 (prokineticin receptor
             2, PKR2, GPR73b) and a CpG island, complete sequence
          Length = 143892

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 111   actctgagaattattcatggcatg 134
             |||||||||| |||||||||||||
Sbjct: 86343 actctgagaagtattcatggcatg 86320



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>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence,
            complete sequence
          Length = 165113

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 26   ccgtgcatgcattgcattgcatgc 49
            ||||||||||||||| ||||||||
Sbjct: 8370 ccgtgcatgcattgcgttgcatgc 8347



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>gb|AC073553.5| Mus musculus strain C57BL/6J chromosome 12 clone RP23-270B12, complete
             sequence
          Length = 187523

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   tctctttcttcttcttgctc 367
             ||||||||||||||||||||
Sbjct: 15846 tctctttcttcttcttgctc 15827



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>emb|BX649563.5| Human DNA sequence from clone RP11-213O5 on chromosome 9 Contains a
             pseudogene similar to part of a novel protein
             (DKFZp434A171), a pseudogene similar to part of meprin A,
             alpha (PABA peptide hydrolase) (MEP1A), a pseudogene
             similar to part of a novel transmembrane receptor protein
             and two novel pseudogenes, complete sequence
          Length = 189495

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   aacacaaaaaggaaaccaca 299
             ||||||||||||||||||||
Sbjct: 29390 aacacaaaaaggaaaccaca 29409



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>gb|AC084864.4| Homo sapiens chromosome 7 clone RP11-738B7, complete sequence
          Length = 176562

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 133    tggaatcttactactgtttgctgg 156
              |||||| |||||||||||||||||
Sbjct: 149679 tggaatattactactgtttgctgg 149702



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>gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0044D15 BAC genomic
             sequence, complete sequence
          Length = 144544

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    cgtgcatgcattgcattgcatgca 50
             ||||||||| ||||||||||||||
Sbjct: 31341 cgtgcatgccttgcattgcatgca 31318



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>gb|AC084865.3| Homo sapiens chromosome 7 clone RP11-437L1, complete sequence
          Length = 214162

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   tggaatcttactactgtttgctgg 156
             |||||| |||||||||||||||||
Sbjct: 71388 tggaatattactactgtttgctgg 71411



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>gb|AC090887.3| Mus musculus strain C57BL/6J clone RP23-404D8, complete sequence
          Length = 161153

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 348  tctctttcttcttcttgctc 367
            ||||||||||||||||||||
Sbjct: 3693 tctctttcttcttcttgctc 3712



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>dbj|AK160437.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length
           enriched library, clone:1810005K16
           product:unclassifiable, full insert sequence
          Length = 1288

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 164 aatcaattggtcatcagttgtgac 187
           |||||||||||||||||| |||||
Sbjct: 704 aatcaattggtcatcagtggtgac 681



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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 343    atcgatctctttcttcttct 362
              ||||||||||||||||||||
Sbjct: 734098 atcgatctctttcttcttct 734117



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 116      gagaattattcatggcatgg 135
                ||||||||||||||||||||
Sbjct: 19459255 gagaattattcatggcatgg 19459274



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 116      gagaattattcatggcatgg 135
                ||||||||||||||||||||
Sbjct: 19437225 gagaattattcatggcatgg 19437244



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 27      cgtgcatgcattgcattgcatgca 50
               ||||||||| ||||||||||||||
Sbjct: 6700493 cgtgcatgccttgcattgcatgca 6700470



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 348      tctctttcttcttcttgctc 367
                ||||||||||||||||||||
Sbjct: 16371003 tctctttcttcttcttgctc 16370984



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 30       gcatgcattgcattgcatgc 49
                ||||||||||||||||||||
Sbjct: 27167696 gcatgcattgcattgcatgc 27167677



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 26      ccgtgcatgcattgcattgcatgc 49
               ||||||||||||||| ||||||||
Sbjct: 9585592 ccgtgcatgcattgcgttgcatgc 9585569



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 351      ctttcttcttcttgctcgct 370
                ||||||||||||||||||||
Sbjct: 19339264 ctttcttcttcttgctcgct 19339283



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>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009C19, from chromosome 3, complete sequence
          Length = 131709

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 26    ccgtgcatgcattgcattgcatgc 49
             ||||||||||||||| ||||||||
Sbjct: 25215 ccgtgcatgcattgcgttgcatgc 25238



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>emb|BX276117.5| Zebrafish DNA sequence from clone CH211-112K18 in linkage group 17,
              complete sequence
          Length = 181677

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    aatataaccaaacacaaaaa 289
              ||||||||||||||||||||
Sbjct: 170122 aatataaccaaacacaaaaa 170103



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>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0637D03
          Length = 180159

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    gcatgcattgcattgcatgc 49
             ||||||||||||||||||||
Sbjct: 24712 gcatgcattgcattgcatgc 24693



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>dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0473H04
          Length = 155204

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     gcatgcattgcattgcatgc 49
              ||||||||||||||||||||
Sbjct: 136506 gcatgcattgcattgcatgc 136487



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>dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0046G12
          Length = 189391

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   tctctttcttcttcttgctc 367
             ||||||||||||||||||||
Sbjct: 59550 tctctttcttcttcttgctc 59531



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>emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chromosome 22, complete
              sequence
          Length = 219376

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    aacacaaaaaggaaaccaca 299
              ||||||||||||||||||||
Sbjct: 137216 aacacaaaaaggaaaccaca 137197



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>dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0475F05
          Length = 147522

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   ctttcttcttcttgctcgct 370
             ||||||||||||||||||||
Sbjct: 24755 ctttcttcttcttgctcgct 24774



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>dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0458B05
          Length = 144917

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    ctttcttcttcttgctcgct 370
              ||||||||||||||||||||
Sbjct: 107062 ctttcttcttcttgctcgct 107081



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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    tctctttcttcttcttgctc 367
              ||||||||||||||||||||
Sbjct: 987088 tctctttcttcttcttgctc 987107



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>gb|AC140346.4| Mus musculus BAC clone RP24-260I8 from 16, complete sequence
          Length = 185587

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 164    aatcaattggtcatcagttgtgac 187
              |||||||||||||||||| |||||
Sbjct: 106887 aatcaattggtcatcagtggtgac 106910



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>emb|BX537934.1|HSM806056 Homo sapiens mRNA; cDNA DKFZp686E0831 (from clone DKFZp686E0831)
          Length = 4865

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 57   tattcctagtaagcatccatgtcc 80
            ||||||||||||| ||||||||||
Sbjct: 2834 tattcctagtaagaatccatgtcc 2811



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 27      cgtgcatgcattgcattgcatgca 50
               ||||||||| ||||||||||||||
Sbjct: 6766960 cgtgcatgccttgcattgcatgca 6766937



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 116      gagaattattcatggcatgg 135
                ||||||||||||||||||||
Sbjct: 19385482 gagaattattcatggcatgg 19385501



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 116      gagaattattcatggcatgg 135
                ||||||||||||||||||||
Sbjct: 19363452 gagaattattcatggcatgg 19363471



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>emb|AL954828.3|CNS08CD4 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 163490

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    gagaattattcatggcatgg 135
              ||||||||||||||||||||
Sbjct: 136949 gagaattattcatggcatgg 136968



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    gagaattattcatggcatgg 135
              ||||||||||||||||||||
Sbjct: 114919 gagaattattcatggcatgg 114938



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>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial
               variable region, strain 129/Sv
          Length = 1382053

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 348     tctctttcttcttcttgctc 367
               ||||||||||||||||||||
Sbjct: 1074405 tctctttcttcttcttgctc 1074386


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,965,575
Number of Sequences: 3902068
Number of extensions: 4965575
Number of successful extensions: 99332
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98887
Number of HSP's gapped (non-prelim): 445
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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