ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast77h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APX1_PEA (P48534) L-ascorbate peroxidase, cytosolic (EC 1.11.1.1... 33 0.13
2APX2_ORYSA (Q9FE01) L-ascorbate peroxidase 2, cytosolic (EC 1.11... 32 0.37
3APX1_ARATH (Q05431) L-ascorbate peroxidase, cytosolic (EC 1.11.1... 32 0.49
4APX1_ORYSA (P93404) L-ascorbate peroxidase 1, cytosolic (EC 1.11... 30 1.1
5APX4_ORYSA (Q6ZJJ1) Putative L-ascorbate peroxidase 4 (EC 1.11.1... 29 3.2
6THA11_MOUSE (Q9JJD0) THAP domain-containing protein 11 28 4.1
7THA11_HUMAN (Q96EK4) THAP domain-containing protein 11 28 4.1
8ZG42_XENLA (P18720) Gastrula zinc finger protein XLCGF42.1 (Frag... 28 7.1
9LEU2_RHOPA (Q6ND69) 3-isopropylmalate dehydratase large subunit ... 28 7.1
10LEU2_NITWN (Q3SNV3) 3-isopropylmalate dehydratase large subunit ... 28 7.1
11YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 ... 27 9.2

>APX1_PEA (P48534) L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP)|
          Length = 249

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = -2

Query: 373 YAEAHLKLSELGFGEA 326
           YAEAHLKLSELGF EA
Sbjct: 234 YAEAHLKLSELGFAEA 249



to top

>APX2_ORYSA (Q9FE01) L-ascorbate peroxidase 2, cytosolic (EC 1.11.1.11) (APXb)|
          Length = 251

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -2

Query: 373 YAEAHLKLSELGFGE 329
           YAEAHLKLSELGF E
Sbjct: 236 YAEAHLKLSELGFAE 250



to top

>APX1_ARATH (Q05431) L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP)|
          Length = 249

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = -2

Query: 373 YAEAHLKLSELGFGEA 326
           YAEAH+KLSELGF +A
Sbjct: 234 YAEAHMKLSELGFADA 249



to top

>APX1_ORYSA (P93404) L-ascorbate peroxidase 1, cytosolic (EC 1.11.1.11) (APXa)|
          Length = 249

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -2

Query: 373 YAEAHLKLSELGFGEA 326
           Y EAHLKLSELGF +A
Sbjct: 234 YKEAHLKLSELGFADA 249



to top

>APX4_ORYSA (Q6ZJJ1) Putative L-ascorbate peroxidase 4 (EC 1.11.1.11)|
          Length = 291

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -2

Query: 373 YAEAHLKLSELGFGEASEG 317
           YAE+H KLSELGF   S G
Sbjct: 232 YAESHKKLSELGFTPRSSG 250



to top

>THA11_MOUSE (Q9JJD0) THAP domain-containing protein 11|
          Length = 305

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 166 IWIRSVGRWGVALFCF*RLVSCDGPA-CSVN----R*VLCSSFPVVFPCRGRNEKK 14
           +W+++V R GV+  CF       G   CSV+    R       P +FP RG NE+K
Sbjct: 35  LWLKNVSRAGVS-GCFSTFQPTTGHRLCSVHFQGGRKTYTVRVPTIFPLRGVNERK 89



to top

>THA11_HUMAN (Q96EK4) THAP domain-containing protein 11|
          Length = 313

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 166 IWIRSVGRWGVALFCF*RLVSCDGPA-CSVN----R*VLCSSFPVVFPCRGRNEKK 14
           +W+++V R GV+  CF       G   CSV+    R       P +FP RG NE+K
Sbjct: 35  LWLKNVSRAGVS-GCFSTFQPTTGHRLCSVHFQGGRKTYTVRVPTIFPLRGVNERK 89



to top

>ZG42_XENLA (P18720) Gastrula zinc finger protein XLCGF42.1 (Fragment)|
          Length = 168

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +2

Query: 20  FISSSTGK--NNRKGTT*HLAVHTTSRSITRYEASKAKQCNT 139
           F  S  GK    R G T HL +HT  +  T  E  K   C T
Sbjct: 90  FSCSECGKCFTRRSGLTAHLRIHTGEKPYTCTECGKCFTCRT 131



to top

>LEU2_RHOPA (Q6ND69) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 469

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 134 NTPSTDRSNPNPD 172
           N P+TDRS PNPD
Sbjct: 67  NVPTTDRSKPNPD 79



to top

>LEU2_NITWN (Q3SNV3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 468

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 134 NTPSTDRSNPNPD 172
           N P+TDRS PNPD
Sbjct: 66  NVPTTDRSKPNPD 78



to top

>YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 intergenic|
            region
          Length = 1140

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 23   ISSSTGKNNRKGTT*HLAVHTTSRSI---TRYEASKAKQ 130
            +SSST K NR  T    A+H TS S    T Y  S AK+
Sbjct: 1080 LSSSTEKVNRSTTKPTAAIHGTSSSAKQSTTYTVSTAKE 1118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,698,361
Number of Sequences: 219361
Number of extensions: 711960
Number of successful extensions: 1798
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1796
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top