>gb|AY109707.1| Zea mays CL21464_1 mRNA sequence
          Length = 907

 Score =  103 bits (52), Expect = 4e-19
 Identities = 115/136 (84%)
 Strand = Plus / Plus

                                                                       
Query: 204 acgatgtactcgccttccgaacccttgaactcacttcctgcatacttggagtaaagcacg 263
           ||||||||||| || |||   |||||||||||||| || ||||||||||| || | ||||
Sbjct: 189 acgatgtactcaccgtcctcgcccttgaactcactccccgcatacttggaatacatcacg 248

                                                                       
Query: 264 ctgcttccaggagtgatcgacaacggcgtcctgctgccatcatcgcccaaaggcccgggg 323
            |||||||||||||||||||||  ||  |||||||||| || |||||||| ||||| |||
Sbjct: 249 ttgcttccaggagtgatcgacaggggattcctgctgccgtcctcgcccaacggccctggg 308

                           
Query: 324 ccaacagcgaccactg 339
           ||||| || |||||||
Sbjct: 309 ccaacggctaccactg 324

>gb|AY103824.1| Zea mays PCO135715 mRNA sequence
          Length = 1388

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 225 cccttgaactcacttcctgcatacttggagtaaagcac 262
           |||||||||||||| ||||||||||||||||| |||||
Sbjct: 973 cccttgaactcactccctgcatacttggagtacagcac 936

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                            
Query: 224      acccttgaactcacttcctgcatacttggagtaaagcacgctgcttccaggagtgatcga 283
                |||||| ||||| ||||| || ||||||||||| | |||| |  | ||||||||||| ||
Sbjct: 16182247 acccttaaactcgcttcccgcgtacttggagtacatcacggtattcccaggagtgattga 16182306

                                     
Query: 284      caacggcgtcctgctgccatc 304
                ||| ||  |||||||||||||
Sbjct: 16182307 caagggtttcctgctgccatc 16182327



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 117      gactaaatatcaaaattcctagttcgcatg 146
                ||||||||||||||||||||| ||| ||||
Sbjct: 16182119 gactaaatatcaaaattcctatttcacatg 16182148

>dbj|D29698.1|RICYK10 Oryza sativa mRNA, partial  homologous to chaperonin 10 gene
          Length = 319

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 225 cccttgaactcacttcctgcatacttggagta 256
           |||||||||||||| ||||| |||||||||||
Sbjct: 75  cccttgaactcactgcctgcntacttggagta 44

>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0556H01
          Length = 149800

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                         
Query: 224   acccttgaactcacttcctgcatacttggagtaaagcacgctgcttccaggagtgatcga 283
             |||||| ||||| ||||| || ||||||||||| | |||| |  | ||||||||||| ||
Sbjct: 86848 acccttaaactcgcttcccgcgtacttggagtacatcacggtattcccaggagtgattga 86907

                                  
Query: 284   caacggcgtcctgctgccatc 304
             ||| ||  |||||||||||||
Sbjct: 86908 caagggtttcctgctgccatc 86928



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 117   gactaaatatcaaaattcctagttcgcatg 146
             ||||||||||||||||||||| ||| ||||
Sbjct: 86720 gactaaatatcaaaattcctatttcacatg 86749

>dbj|AK098903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C22, full
           insert sequence
          Length = 1016

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 224 acccttgaactcacttcctgcatacttggagtaaagcacgctgcttccaggagtgatcga 283
           |||||| ||||| ||||| || ||||||||||| | |||| |  | ||||||||||| ||
Sbjct: 777 acccttaaactcgcttcccgcgtacttggagtacatcacggtattcccaggagtgattga 718

                                
Query: 284 caacggcgtcctgctgccatc 304
           ||| ||  |||||||||||||
Sbjct: 717 caagggtttcctgctgccatc 697



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 117 gactaaatatcaaaattcctagttcgcatg 146
           ||||||||||||||||||||| ||| ||||
Sbjct: 905 gactaaatatcaaaattcctatttcacatg 876

>dbj|AK061837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D10, full
           insert sequence
          Length = 1008

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 224 acccttgaactcacttcctgcatacttggagtaaagcacgctgcttccaggagtgatcga 283
           |||||| ||||| ||||| || ||||||||||| | |||| |  | ||||||||||| ||
Sbjct: 796 acccttaaactcgcttcccgcgtacttggagtacatcacggtattcccaggagtgattga 737

                                
Query: 284 caacggcgtcctgctgccatc 304
           ||| ||  |||||||||||||
Sbjct: 736 caagggtttcctgctgccatc 716



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 117 gactaaatatcaaaattcctagttcgcatg 146
           ||||||||||||||||||||| ||| ||||
Sbjct: 924 gactaaatatcaaaattcctatttcacatg 895

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 225     cccttgaactcacttcctgcatacttggagta 256
               |||||||||||||| ||||| |||||||||||
Sbjct: 4964153 cccttgaactcactgcctgcgtacttggagta 4964122



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 225     cccttgaactcacttcctgcatacttggagta 256
               |||||||||||||| ||||| |||||||||||
Sbjct: 4949033 cccttgaactcactgcctgcgtacttggagta 4949002

>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:B1172G12
          Length = 171974

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 225  cccttgaactcacttcctgcatacttggagta 256
            |||||||||||||| ||||| |||||||||||
Sbjct: 6267 cccttgaactcactgcctgcgtacttggagta 6236

>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0528E04
          Length = 170701

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 225    cccttgaactcacttcctgcatacttggagta 256
              |||||||||||||| ||||| |||||||||||
Sbjct: 151636 cccttgaactcactgcctgcgtacttggagta 151605



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 225    cccttgaactcacttcctgcatacttggagta 256
              |||||||||||||| ||||| |||||||||||
Sbjct: 136516 cccttgaactcactgcctgcgtacttggagta 136485

>dbj|AK104352.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G10, full
           insert sequence
          Length = 1129

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 225 cccttgaactcacttcctgcatacttggagta 256
           |||||||||||||| ||||| |||||||||||
Sbjct: 876 cccttgaactcactgcctgcgtacttggagta 845

>dbj|AK065072.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001K09, full
           insert sequence
          Length = 1130

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 225 cccttgaactcacttcctgcatacttggagta 256
           |||||||||||||| ||||| |||||||||||
Sbjct: 877 cccttgaactcactgcctgcgtacttggagta 846

>gb|AC102343.8| Mus musculus chromosome 3, clone RP23-254H18, complete sequence
          Length = 220876

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     ttattaaaactatcaggcaa 40
              ||||||||||||||||||||
Sbjct: 127341 ttattaaaactatcaggcaa 127360

>gb|AF381702.1| Uncultured chlorophyte clone 994DY13F ribulose 1,5-bisphosphate
           carboxylase/oxygenase large subunit (rbcL) gene, partial
           cds
          Length = 583

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 cgacaacggcgtcctgctgc 300
           ||||||||||||||||||||
Sbjct: 295 cgacaacggcgtcctgctgc 314

>gb|AF381719.1| Uncultured chlorophyte clone 994GY2 ribulose 1,5-bisphosphate
           carboxylase/oxygenase large subunit (rbcL) gene, partial
           cds
          Length = 587

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 cgacaacggcgtcctgctgc 300
           ||||||||||||||||||||
Sbjct: 297 cgacaacggcgtcctgctgc 316

>gb|AF381720.1| Uncultured chlorophyte clone 994GY25 ribulose 1,5-bisphosphate
           carboxylase/oxygenase large subunit (rbcL) gene, partial
           cds
          Length = 588

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 cgacaacggcgtcctgctgc 300
           ||||||||||||||||||||
Sbjct: 297 cgacaacggcgtcctgctgc 316

>gb|AC165238.5| Mus musculus chromosome 3, clone RP23-466A3, complete sequence
          Length = 180939

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     ttattaaaactatcaggcaa 40
              ||||||||||||||||||||
Sbjct: 178768 ttattaaaactatcaggcaa 178749

>gb|AC116998.3| Mus musculus BAC clone RP23-16F6 from 18, complete sequence
          Length = 216959

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    aactcacttcctgcatactt 250
              ||||||||||||||||||||
Sbjct: 172141 aactcacttcctgcatactt 172122

>emb|X03220.1|ANRUBG Anacystis nidulans genes for ribulose 1,5-bisphosphate carboxylase
            /oxygenase large and small subunits
          Length = 3589

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 281  cgacaacggcgtcctgctgc 300
            ||||||||||||||||||||
Sbjct: 2304 cgacaacggcgtcctgctgc 2323

>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    cgacaacggcgtcctgctgc 300
              ||||||||||||||||||||
Sbjct: 140493 cgacaacggcgtcctgctgc 140474

>gb|AC024950.3|AC024950 Mus musculus strain C57BL6/J chromosome 6 clone RP23-208N9, complete
             sequence
          Length = 182382

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   atgatctgaaaacgatgtac 212
             ||||||||||||||||||||
Sbjct: 70205 atgatctgaaaacgatgtac 70224

>gb|AC013736.9| Homo sapiens BAC clone RP11-570D3 from 2, complete sequence
          Length = 93578

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    agcaattcacaattcaccaa 82
             ||||||||||||||||||||
Sbjct: 53850 agcaattcacaattcaccaa 53869

>emb|AL645755.20| Zebrafish DNA sequence from clone RP71-1N18 in linkage group 22, complete
              sequence
          Length = 141779

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     caattcacaattcaccaatc 84
              ||||||||||||||||||||
Sbjct: 114698 caattcacaattcaccaatc 114717

>gb|AC151340.2| Xenopus tropicalis clone ISB-362A3, complete sequence
          Length = 101442

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    agcaataaccaaacagggtt 113
             ||||||||||||||||||||
Sbjct: 51138 agcaataaccaaacagggtt 51157

>dbj|AP002514.5| Homo sapiens genomic DNA, chromosome 11 clone:CTD-3055E19, complete
              sequence
          Length = 201641

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     caagagcaataaccaaacag 109
              ||||||||||||||||||||
Sbjct: 104012 caagagcaataaccaaacag 104031

>gb|AC148020.3| Mus musculus BAC clone RP23-6A22 from 18, complete sequence
          Length = 238892

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    aactcacttcctgcatactt 250
              ||||||||||||||||||||
Sbjct: 176801 aactcacttcctgcatactt 176820

>gb|K00486.1|SYORBPCLS synechococcus ribulose 1,5-bisphosphate carboxylase (rubpcase) large
            subunit
          Length = 1882

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 281  cgacaacggcgtcctgctgc 300
            ||||||||||||||||||||
Sbjct: 1115 cgacaacggcgtcctgctgc 1134

>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 281     cgacaacggcgtcctgctgc 300
               ||||||||||||||||||||
Sbjct: 1480306 cgacaacggcgtcctgctgc 1480325


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,689,640
Number of Sequences: 3902068
Number of extensions: 2689640
Number of successful extensions: 49800
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49670
Number of HSP's gapped (non-prelim): 130
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)