ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast77f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 119 6e-24
2gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare str... 119 6e-24
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
4dbj|AK119619.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 6e-24
5dbj|AK104751.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 6e-24
6dbj|AK104621.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 6e-24
7dbj|AK070684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 6e-24
8dbj|AK073387.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 2e-20
9gb|AY108108.1| Zea mays PCO072542 mRNA sequence 62 1e-06
10gb|AY108047.1| Zea mays PCO103710 mRNA sequence 44 0.28
11gb|AC149487.1| Solanum demissum chromosome 5 clone PGEC407 map M... 40 4.3
12gb|AY757038.1| Macrohasseltia macroterantha trnL-trnF intergenic... 40 4.3
13gb|AY756988.1| Azara salicifolia trnL-trnF intergenic spacer, pa... 40 4.3
14gb|AC003986.2| Homo sapiens BAC clone CTA-370M10 from 7, complet... 40 4.3
15emb|AL354704.17| Human DNA sequence from clone RP11-630H9 on chr... 40 4.3
16gb|AC109441.3| Homo sapiens chromosome 5 clone CTC-269P20, compl... 40 4.3
17gb|AC114770.4| Homo sapiens BAC clone RP11-422D16 from 4, comple... 40 4.3
18gb|AC008473.6| Homo sapiens chromosome 5 clone CTC-375J15, compl... 40 4.3
19gb|AC152401.6| Mus musculus chromosome 3, clone RP23-287A2, comp... 40 4.3
20gb|AC018867.5| Homo sapiens BAC clone RP11-66C4 from 2, complete... 40 4.3
21dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.3
22emb|BX649294.7| Zebrafish DNA sequence from clone CH211-223C9 in... 40 4.3
23gb|AC122183.4| Mus musculus BAC clone RP23-14P23 from 3, complet... 40 4.3 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  119 bits (60), Expect = 6e-24
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                           
Query: 186     cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 245
               |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 7294468 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 7294409

                                                                           
Query: 246     tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 305
               |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 7294408 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 7294349

                                   
Query: 306     tggagggacatgaacccttg 325
               ||||||||||||||||||||
Sbjct: 7294348 tggagggacatgaacccttg 7294329
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>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060E18, from chromosome 3, complete sequence
          Length = 147983

 Score =  119 bits (60), Expect = 6e-24
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                         
Query: 186   cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 245
             |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 45724 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 45665

                                                                         
Query: 246   tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 305
             |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 45664 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 45605

                                 
Query: 306   tggagggacatgaacccttg 325
             ||||||||||||||||||||
Sbjct: 45604 tggagggacatgaacccttg 45585
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  119 bits (60), Expect = 6e-24
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                           
Query: 186     cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 245
               |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 7292363 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 7292304

                                                                           
Query: 246     tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 305
               |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 7292303 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 7292244

                                   
Query: 306     tggagggacatgaacccttg 325
               ||||||||||||||||||||
Sbjct: 7292243 tggagggacatgaacccttg 7292224
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>dbj|AK119619.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-H01, full
            insert sequence
          Length = 1198

 Score =  119 bits (60), Expect = 6e-24
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 186  cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 245
            |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 1074 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 1015

                                                                        
Query: 246  tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 305
            |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 1014 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 955

                                
Query: 306  tggagggacatgaacccttg 325
            ||||||||||||||||||||
Sbjct: 954  tggagggacatgaacccttg 935
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>dbj|AK104751.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F06, full
            insert sequence
          Length = 1187

 Score =  119 bits (60), Expect = 6e-24
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 186  cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 245
            |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 1063 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 1004

                                                                        
Query: 246  tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 305
            |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 1003 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 944

                                
Query: 306  tggagggacatgaacccttg 325
            ||||||||||||||||||||
Sbjct: 943  tggagggacatgaacccttg 924
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>dbj|AK104621.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G08, full
            insert sequence
          Length = 1187

 Score =  119 bits (60), Expect = 6e-24
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 186  cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 245
            |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 1063 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 1004

                                                                        
Query: 246  tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 305
            |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 1003 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 944

                                
Query: 306  tggagggacatgaacccttg 325
            ||||||||||||||||||||
Sbjct: 943  tggagggacatgaacccttg 924
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>dbj|AK070684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062L13, full
            insert sequence
          Length = 1399

 Score =  119 bits (60), Expect = 6e-24
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 186  cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 245
            |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 1088 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 1029

                                                                        
Query: 246  tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 305
            |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 1028 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 969

                                
Query: 306  tggagggacatgaacccttg 325
            ||||||||||||||||||||
Sbjct: 968  tggagggacatgaacccttg 949
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>dbj|AK073387.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043K11, full
            insert sequence
          Length = 2343

 Score =  107 bits (54), Expect = 2e-20
 Identities = 102/118 (86%)
 Strand = Plus / Plus

                                                                        
Query: 208  tggagggctggaagtggtttgttttgcgcgaggtccactcatacaagactttaccagaaa 267
            |||||||||||| || ||||| ||||| |  | ||||||  |||||||  || |||||||
Sbjct: 1633 tggagggctggaggtagtttgctttgctcttgctccacttgtacaagatgttcccagaaa 1692

                                                                      
Query: 268  catcataaaagatgaagtcagcttggtccttgtttagctggagggacatgaacccttg 325
            ||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1693 catcacaaaatatgaagtcagcttggtcctggtttatctggagggacatgaacccttg 1750
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>gb|AY108108.1| Zea mays PCO072542 mRNA sequence
          Length = 1591

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 273  taaaagatgaagtcagcttggtccttgtttagctggagggacatgaacccttgcc 327
            |||||||| |||| ||| ||||| | ||| |||||||||||||||||||||||||
Sbjct: 1214 taaaagataaagtgagcctggtcttggttcagctggagggacatgaacccttgcc 1160
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>gb|AY108047.1| Zea mays PCO103710 mRNA sequence
          Length = 1513

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 302  tagctggagggacatgaacccttgcc 327
            |||||||||||||||||| |||||||
Sbjct: 1039 tagctggagggacatgaagccttgcc 1014
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>gb|AC149487.1| Solanum demissum chromosome 5 clone PGEC407 map MAP_LOC, complete
             sequence
          Length = 73587

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   cacattcaattttttcacaa 142
             ||||||||||||||||||||
Sbjct: 38746 cacattcaattttttcacaa 38727
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>gb|AY757038.1| Macrohasseltia macroterantha trnL-trnF intergenic spacer, partial
           sequence; chloroplast
          Length = 307

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 125 cattcaattttttcacaaat 144
           ||||||||||||||||||||
Sbjct: 60  cattcaattttttcacaaat 79
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>gb|AY756988.1| Azara salicifolia trnL-trnF intergenic spacer, partial sequence;
           chloroplast
          Length = 111

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 125 cattcaattttttcacaaat 144
           ||||||||||||||||||||
Sbjct: 63  cattcaattttttcacaaat 82
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>gb|AC003986.2| Homo sapiens BAC clone CTA-370M10 from 7, complete sequence
          Length = 188205

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 178    tgcatgtccctcattctgcagtga 201
              ||||||||||||||||||| ||||
Sbjct: 122569 tgcatgtccctcattctgctgtga 122546
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>emb|AL354704.17| Human DNA sequence from clone RP11-630H9 on chromosome 9, complete
             sequence
          Length = 130718

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 35    caattcacatccagttcaatattt 58
             ||||||||||||||| ||||||||
Sbjct: 89901 caattcacatccagtgcaatattt 89878
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>gb|AC109441.3| Homo sapiens chromosome 5 clone CTC-269P20, complete sequence
          Length = 89908

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   cgggggcacattcaattttt 136
             ||||||||||||||||||||
Sbjct: 71896 cgggggcacattcaattttt 71915
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>gb|AC114770.4| Homo sapiens BAC clone RP11-422D16 from 4, complete sequence
          Length = 127953

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 197    agtgacataaatggagggctggaa 220
              ||||||| ||||||||||||||||
Sbjct: 117361 agtgacagaaatggagggctggaa 117384
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>gb|AC008473.6| Homo sapiens chromosome 5 clone CTC-375J15, complete sequence
          Length = 98360

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   cgggggcacattcaattttt 136
             ||||||||||||||||||||
Sbjct: 24854 cgggggcacattcaattttt 24835
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>gb|AC152401.6| Mus musculus chromosome 3, clone RP23-287A2, complete sequence
          Length = 217151

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 263    agaaacatcataaaagatgaagtcagct 290
              ||||||| ||||||| ||||||||||||
Sbjct: 177012 agaaacaacataaaacatgaagtcagct 177039
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>gb|AC018867.5| Homo sapiens BAC clone RP11-66C4 from 2, complete sequence
          Length = 78121

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ccatactgatctctgctcct 24
             ||||||||||||||||||||
Sbjct: 62741 ccatactgatctctgctcct 62722
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>dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP13-25N22, complete
              sequence
          Length = 190267

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    gggctggaagtggtttgttt 231
              ||||||||||||||||||||
Sbjct: 137014 gggctggaagtggtttgttt 136995
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>emb|BX649294.7| Zebrafish DNA sequence from clone CH211-223C9 in linkage group 22,
              complete sequence
          Length = 209223

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 207    atggagggctggaagtggtt 226
              ||||||||||||||||||||
Sbjct: 125635 atggagggctggaagtggtt 125616
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>gb|AC122183.4| Mus musculus BAC clone RP23-14P23 from 3, complete sequence
          Length = 210223

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 263  agaaacatcataaaagatgaagtcagct 290
            ||||||| ||||||| ||||||||||||
Sbjct: 9356 agaaacaacataaaacatgaagtcagct 9383


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,250,159
Number of Sequences: 3902068
Number of extensions: 3250159
Number of successful extensions: 64284
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64197
Number of HSP's gapped (non-prelim): 87
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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