ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast77d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AKAP5_BOVIN (P24275) A-kinase anchor protein 5 (A-kinase anchor ... 29 2.4
2WISP2_HUMAN (O76076) WNT1-inducible signaling pathway protein 2 ... 28 7.1
3CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (C... 28 7.1

>AKAP5_BOVIN (P24275) A-kinase anchor protein 5 (A-kinase anchor protein 75 kDa)|
           (AKAP 75) (cAMP-dependent protein kinase regulatory
           subunit II high affinity binding protein) (P75)
          Length = 428

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 127 ADAAQNLQP*RRANQRSSYYTGRWSNLHCTFARRPRSNGNYQNNP 261
           ADAA+   P  RA+ +     G W ++     RR RS  + Q  P
Sbjct: 56  ADAAKKCPPEARASDQPQRPGGAWDSIKRLVTRRKRSESSKQQKP 100



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>WISP2_HUMAN (O76076) WNT1-inducible signaling pathway protein 2 precursor|
           (WISP-2) (Connective tissue growth factor-like protein)
           (CTGF-L) (Connective tissue growth factor-related
           protein 58)
          Length = 250

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 201 TPSARVVTAALICSASRLKVLCCIGPCAC 115
           TP   ++  +L+C  S+++   C  PC C
Sbjct: 4   TPKTHLLAFSLLCLLSKVRTQLCPTPCTC 32



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>CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (Complement C3d|
           receptor) (CD21 antigen)
          Length = 1025

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 18/75 (24%), Positives = 31/75 (41%)
 Frame = -1

Query: 286 QYVVSVSSRGCFGSFRLIWACVQKCSVNYSIGPCSNCCVDLLCVKAEGSVLHRPMCLFSS 107
           Q++ +  +  C   F+L  +  Q C            C ++ C      V+H     +SS
Sbjct: 477 QFIRTAVNSSCDEGFQLSESAYQLCQGTIPWFIEIRLCKEITCPPPP--VIHNGTHTWSS 534

Query: 106 ASGLAVGGVVTFFCY 62
           +  +  G VVT+ CY
Sbjct: 535 SEDVPYGTVVTYMCY 549


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,460,113
Number of Sequences: 219361
Number of extensions: 702284
Number of successful extensions: 1872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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