>ref|XM_474305.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1164

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                        
Query: 234  gaaggaaaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 293
            |||||| ||||||||||| ||||  |||||||||||||  | ||||||||||||  | ||
Sbjct: 1161 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 1102

                                               
Query: 294  ccacgccgcgcccgtcaccaggttgccgtcggtga 328
            ||| |||||||| ||||| ||||||||||||||||
Sbjct: 1101 ccatgccgcgccggtcacaaggttgccgtcggtga 1067

>gb|BT016784.1| Zea mays clone Contig617 mRNA sequence
          Length = 1616

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                        
Query: 234  gaaggaaaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 293
            |||||||||||||| ||||||||  ||||||||||||| ||||||||| |||||  | ||
Sbjct: 1285 gaaggaaaccttgacgccgagcaacgccatgagctgggacacgaactctgggtggcctgg 1226

                                               
Query: 294  ccacgccgcgcccgtcaccaggttgccgtcggtga 328
            ||| || ||||| ||||| |||||||| |||||||
Sbjct: 1225 ccaggctgcgccggtcacaaggttgccatcggtga 1191

>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17,
             complete sequence
          Length = 159894

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 82/95 (86%)
 Strand = Plus / Plus

                                                                         
Query: 234   gaaggaaaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 293
             |||||| ||||||||||| ||||  |||||||||||||  | ||||||||||||  | ||
Sbjct: 26311 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 26370

                                                
Query: 294   ccacgccgcgcccgtcaccaggttgccgtcggtga 328
             ||| |||||||| ||||| ||||||||||||||||
Sbjct: 26371 ccatgccgcgccggtcacaaggttgccgtcggtga 26405

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 82/95 (86%)
 Strand = Plus / Plus

                                                                            
Query: 234      gaaggaaaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 293
                |||||| ||||||||||| ||||  |||||||||||||  | ||||||||||||  | ||
Sbjct: 34301908 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 34301967

                                                   
Query: 294      ccacgccgcgcccgtcaccaggttgccgtcggtga 328
                ||| |||||||| ||||| ||||||||||||||||
Sbjct: 34301968 ccatgccgcgccggtcacaaggttgccgtcggtga 34302002

>gb|DQ351282.1| Oryza rufipogon unknown gene
          Length = 14907

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 82/95 (86%)
 Strand = Plus / Plus

                                                                        
Query: 234  gaaggaaaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 293
            |||||| ||||||||||| ||||  |||||||||||||  | ||||||||||||  | ||
Sbjct: 9500 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 9559

                                               
Query: 294  ccacgccgcgcccgtcaccaggttgccgtcggtga 328
            ||| |||||||| ||||| ||||||||||||||||
Sbjct: 9560 ccatgccgcgccggtcacaaggttgccgtcggtga 9594

>dbj|AK100753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118M23, full
            insert sequence
          Length = 1368

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                        
Query: 234  gaaggaaaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 293
            |||||| ||||||||||| ||||  |||||||||||||  | ||||||||||||  | ||
Sbjct: 1221 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 1162

                                               
Query: 294  ccacgccgcgcccgtcaccaggttgccgtcggtga 328
            ||| |||||||| ||||| ||||||||||||||||
Sbjct: 1161 ccatgccgcgccggtcacaaggttgccgtcggtga 1127

>gb|AY104354.1| Zea mays PCO108571 mRNA sequence
          Length = 1633

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                        
Query: 234  gaaggaaaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 293
            |||||||||||||| ||||||||  ||||||||||||| ||||||||| |||||  | ||
Sbjct: 1259 gaaggaaaccttgacgccgagcaacgccatgagctgggacacgaactctgggtggcctgg 1200

                                               
Query: 294  ccacgccgcgcccgtcaccaggttgccgtcggtga 328
            ||| || ||||| ||||| |||||||| |||||||
Sbjct: 1199 ccaggctgcgccggtcacaaggttgccatcggtga 1165

>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete
             sequence
          Length = 95419

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 82/95 (86%)
 Strand = Plus / Plus

                                                                         
Query: 234   gaaggaaaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 293
             |||||| ||||||||||| ||||  |||||||||||||  | ||||||||||||  | ||
Sbjct: 74231 gaaggagaccttgatgcctagcaatgccatgagctgggagatgaactccgggtggccagg 74290

                                                
Query: 294   ccacgccgcgcccgtcaccaggttgccgtcggtga 328
             ||| |||||||| ||||| ||||||||||||||||
Sbjct: 74291 ccatgccgcgccggtcacaaggttgccgtcggtga 74325

>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                            
Query: 281    ccgggtgcgcgggccacgccgcgcccgtcaccaggttgccgtcggt 326
              |||| |||||||||||||||| | | || |||||||||||||||||
Sbjct: 229168 ccggatgcgcgggccacgccggggcggtgaccaggttgccgtcggt 229123

>ref|XM_368328.1| Magnaporthe grisea 70-15 chromosome VI predicted protein
           (MG00916.4) partial mRNA
          Length = 378

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 251 cgagcagggccatgagctgggc 272
           ||||||||||||||||||||||
Sbjct: 40  cgagcagggccatgagctgggc 19

>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 281    ccgggtgcgcgggccacgccgcgcccgtcaccaggttgccgtcggt 326
              |||| ||||||||||| |||| | | || |||||||||||||||||
Sbjct: 133200 ccggatgcgcgggccatgccggggcggtgaccaggttgccgtcggt 133155

>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 281    ccgggtgcgcgggccacgccgcgcccgtcaccaggttgccgtcggt 326
              |||| ||||||||||| |||| | | || |||||||||||||||||
Sbjct: 245570 ccggatgcgcgggccatgccggggcggtgaccaggttgccgtcggt 245525

>gb|AE009024.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 50 of
            256 of the complete sequence
          Length = 10029

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 305  ccgtcaccaggttgccgtcgg 325
            |||||||||||||||||||||
Sbjct: 4752 ccgtcaccaggttgccgtcgg 4772

>ref|XM_964921.1| PREDICTED: Tribolium castaneum similar to zinc finger protein 585B
           (LOC658539), mRNA
          Length = 1233

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 23  tcaaacacaaaaaacgccaca 43
           |||||||||||||||||||||
Sbjct: 527 tcaaacacaaaaaacgccaca 547

>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 305    ccgtcaccaggttgccgtcgg 325
              |||||||||||||||||||||
Sbjct: 540114 ccgtcaccaggttgccgtcgg 540134

>gb|U95165.1|ATU95165 Agrobacterium tumefaciens FlaD (flaD), FlhB (flhB), FliG (fliG), FliN
             (fliN), FliM (fliM), MotA (motA), FlgF (flgF), FliI
             (fliI), FlgB (flgB), FlgC (flgC), FliE (fliE), FlgG
             (flgG), FlgA (flgA), FlgI (flgI), FlgH (flgH), FliL
             (fliL), FliP (fliP), FlaA (flaA), FlaB (flaB) and FlaC
             (flaC) genes, complete cds
          Length = 21846

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 305   ccgtcaccaggttgccgtcgg 325
             |||||||||||||||||||||
Sbjct: 12891 ccgtcaccaggttgccgtcgg 12871

>gb|U39941.1|ATU39941 Agrobacterium tumefaciens flagellar gene region, flagellar basal body
            components (flgB, flgC, fliE, flgG), P-ring subunit
            (flgI), L-ring subunit (flgH), and FliP (fliP) genes,
            complete cds
          Length = 7205

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 305  ccgtcaccaggttgccgtcgg 325
            |||||||||||||||||||||
Sbjct: 2299 ccgtcaccaggttgccgtcgg 2279

>ref|NM_188637.1| Oryza sativa (japonica cultivar-group), Ozsa8240 predicted mRNA
          Length = 1671

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 cgcgggccacgccgcgcccg 307
           ||||||||||||||||||||
Sbjct: 186 cgcgggccacgccgcgcccg 167

>gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5, complete sequence
          Length = 219218

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    cagggccatgagctgggcca 274
              ||||||||||||||||||||
Sbjct: 123528 cagggccatgagctgggcca 123509

>gb|AC151577.2| Mus musculus BAC clone RP23-371D23 from chromosome 5, complete sequence
          Length = 206735

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    cagggccatgagctgggcca 274
              ||||||||||||||||||||
Sbjct: 149931 cagggccatgagctgggcca 149950

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 296     acgccgcgcccgtcaccaggttgc 319
               |||||||||||||||| |||||||
Sbjct: 2199666 acgccgcgcccgtcacgaggttgc 2199643

>ref|XM_948520.1| Theileria annulata strain Ankara hypothetical protein (TA16660)
            partial mRNA
          Length = 5145

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 172  atgttgcatctgggttgtatatca 195
            ||||| ||||||||||||||||||
Sbjct: 3457 atgttacatctgggttgtatatca 3480

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 296    acgccgcgcccgtcaccaggttgc 319
              |||||||||||||||| |||||||
Sbjct: 361289 acgccgcgcccgtcacgaggttgc 361266

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 251    cgagcagggccatgagctgggcca 274
              ||||||||||| ||||||||||||
Sbjct: 206260 cgagcagggccttgagctgggcca 206283

>dbj|AB244625.1| Hexagrammos octogrammus genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2,
            28S rRNA
          Length = 1217

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gggtgcgcgggccacgccgc 302
            ||||||||||||||||||||
Sbjct: 1125 gggtgcgcgggccacgccgc 1144

>gb|AY129331.1| Mycobacteriophage CJW1, complete genome
          Length = 75931

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   tgagctgggccacgaactcc 282
             ||||||||||||||||||||
Sbjct: 28815 tgagctgggccacgaactcc 28796

>dbj|AK019523.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
            library, clone:4833439F03 product:unclassifiable, full
            insert sequence
          Length = 2472

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 255  cagggccatgagctgggcca 274
            ||||||||||||||||||||
Sbjct: 1144 cagggccatgagctgggcca 1125

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 296     acgccgcgcccgtcaccaggttgc 319
               |||||||||||||||| |||||||
Sbjct: 1626998 acgccgcgcccgtcacgaggttgc 1627021

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 288     cgcgggccacgccgcgcccg 307
               ||||||||||||||||||||
Sbjct: 7356392 cgcgggccacgccgcgcccg 7356411

>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0702F03
          Length = 141111

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   cgcgggccacgccgcgcccg 307
             ||||||||||||||||||||
Sbjct: 17420 cgcgggccacgccgcgcccg 17439

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    gtcaccaggttgccgtcggt 326
              ||||||||||||||||||||
Sbjct: 443688 gtcaccaggttgccgtcggt 443707

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 281     ccgggtgcgcgggccacgccgcgcccgtcaccaggttgcc 320
               |||||||||||||||| ||||   | ||||||||||||||
Sbjct: 1035702 ccgggtgcgcgggccatgccggtgcggtcaccaggttgcc 1035663


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,490,153
Number of Sequences: 3902068
Number of extensions: 2490153
Number of successful extensions: 49178
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48807
Number of HSP's gapped (non-prelim): 371
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)