ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast77c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 204 2e-49
2gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 204 2e-49
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
4dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
5gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 139 7e-30
6gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, comp... 46 0.084
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
9dbj|AK073061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.084
11gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.084
12emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 46 0.084
13emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.084
14gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, comp... 46 0.084
15gb|AC130826.4| Mus musculus BAC clone RP23-400F13 from chromosom... 42 1.3
16gb|AC099661.11| Homo sapiens 3 BAC RP11-110C15 (Roswell Park Can... 42 1.3
17gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete... 42 1.3
18ref|XM_464737.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
19gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete... 40 5.2
20gb|BC076483.1| Danio rerio zgc:92467, mRNA (cDNA clone MGC:92467... 40 5.2
21gb|AC147379.3| Pan troglodytes BAC clone RP43-175C18 from 7, com... 40 5.2
22gb|AC145990.3| Pan troglodytes BAC clone RP43-168N19 from 7, com... 40 5.2
23emb|CT009723.4| Mouse DNA sequence from clone RP23-12L5 on chrom... 40 5.2
24gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosom... 40 5.2
25gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosom... 40 5.2
26gb|AC073323.5| Homo sapiens BAC clone RP11-332K15 from 7, comple... 40 5.2
27emb|AL355339.7| Human DNA sequence from clone RP11-461K13 on chr... 40 5.2
28gb|DQ100347.1| Zea mays 9,10-9',10' carotenoid cleavage dioxygen... 40 5.2
29ref|NM_001003494.1| Danio rerio zgc:92467 (zgc:92467), mRNA 40 5.2
30gb|AC106029.8| Homo sapiens chromosome 15, clone CTD-2538I11, co... 40 5.2
31gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, c... 40 5.2
32gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence 40 5.2
33gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, com... 40 5.2
34dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
35dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
36dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
37emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on ch... 40 5.2
38gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, comple... 40 5.2
39gb|AC174070.1| Homo sapiens chromosome 15 clone WI2-635I4, compl... 40 5.2 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  204 bits (103), Expect = 2e-49
 Identities = 279/336 (83%), Gaps = 5/336 (1%)
 Strand = Plus / Minus

                                                                            
Query: 43       gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 102
                |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 10412390 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 10412331

                                                                            
Query: 103      ttaggaatgaaagaatgacacgggcaccaaaactctcttg--ccctctaagaactctata 160
                | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 10412330 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 10412271

                                                                            
Query: 161      tacagactgaaaaatagactctggagtctacttattaatagtctgaaaaaactaagagct 220
                ||||||| |||||||||||| ||||||||||||||| ||  ||||||  |||||||| | 
Sbjct: 10412270 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 10412211

                                                                            
Query: 221      gggattttctttcagtctgcaagaggctgactactctgtgggggtggatcttgtatcatc 280
                |  | |||   ||||||||||||||||||||||||||||    || ||| |||| || ||
Sbjct: 10412210 gaaacttt---tcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 10412154

                                                                            
Query: 281      ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaaggacgaggtggc 340
                |||||| || || || ||||| || || |||||||||||||||||||||||||||| |||
Sbjct: 10412153 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaaggacgaggaggc 10412094

                                                    
Query: 341      ggaaaccgcaatcgagggcctgatctgctcgagctg 376
                 || || || | ||||||| ||||||||||||||||
Sbjct: 10412093 cgatactgccaccgagggcttgatctgctcgagctg 10412058
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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score =  204 bits (103), Expect = 2e-49
 Identities = 279/336 (83%), Gaps = 5/336 (1%)
 Strand = Plus / Minus

                                                                         
Query: 43    gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 102
             |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 68943 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 68884

                                                                         
Query: 103   ttaggaatgaaagaatgacacgggcaccaaaactctcttg--ccctctaagaactctata 160
             | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 68883 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 68824

                                                                         
Query: 161   tacagactgaaaaatagactctggagtctacttattaatagtctgaaaaaactaagagct 220
             ||||||| |||||||||||| ||||||||||||||| ||  ||||||  |||||||| | 
Sbjct: 68823 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 68764

                                                                         
Query: 221   gggattttctttcagtctgcaagaggctgactactctgtgggggtggatcttgtatcatc 280
             |  | |||   ||||||||||||||||||||||||||||    || ||| |||| || ||
Sbjct: 68763 gaaacttt---tcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 68707

                                                                         
Query: 281   ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaaggacgaggtggc 340
             |||||| || || || ||||| || || |||||||||||||||||||||||||||| |||
Sbjct: 68706 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaaggacgaggaggc 68647

                                                 
Query: 341   ggaaaccgcaatcgagggcctgatctgctcgagctg 376
              || || || | ||||||| ||||||||||||||||
Sbjct: 68646 cgatactgccaccgagggcttgatctgctcgagctg 68611
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  204 bits (103), Expect = 2e-49
 Identities = 279/336 (83%), Gaps = 5/336 (1%)
 Strand = Plus / Minus

                                                                            
Query: 43       gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 102
                |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 10410491 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 10410432

                                                                            
Query: 103      ttaggaatgaaagaatgacacgggcaccaaaactctcttg--ccctctaagaactctata 160
                | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 10410431 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 10410372

                                                                            
Query: 161      tacagactgaaaaatagactctggagtctacttattaatagtctgaaaaaactaagagct 220
                ||||||| |||||||||||| ||||||||||||||| ||  ||||||  |||||||| | 
Sbjct: 10410371 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 10410312

                                                                            
Query: 221      gggattttctttcagtctgcaagaggctgactactctgtgggggtggatcttgtatcatc 280
                |  | |||   ||||||||||||||||||||||||||||    || ||| |||| || ||
Sbjct: 10410311 gaaacttt---tcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 10410255

                                                                            
Query: 281      ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaaggacgaggtggc 340
                |||||| || || || ||||| || || |||||||||||||||||||||||||||| |||
Sbjct: 10410254 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaaggacgaggaggc 10410195

                                                    
Query: 341      ggaaaccgcaatcgagggcctgatctgctcgagctg 376
                 || || || | ||||||| ||||||||||||||||
Sbjct: 10410194 cgatactgccaccgagggcttgatctgctcgagctg 10410159
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>dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B05, full
            insert sequence
          Length = 1650

 Score =  204 bits (103), Expect = 2e-49
 Identities = 279/336 (83%), Gaps = 5/336 (1%)
 Strand = Plus / Minus

                                                                        
Query: 43   gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 102
            |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 1603 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 1544

                                                                        
Query: 103  ttaggaatgaaagaatgacacgggcaccaaaactctcttg--ccctctaagaactctata 160
            | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 1543 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 1484

                                                                        
Query: 161  tacagactgaaaaatagactctggagtctacttattaatagtctgaaaaaactaagagct 220
            ||||||| |||||||||||| ||||||||||||||| ||  ||||||  |||||||| | 
Sbjct: 1483 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 1424

                                                                        
Query: 221  gggattttctttcagtctgcaagaggctgactactctgtgggggtggatcttgtatcatc 280
            |  | |||   ||||||||||||||||||||||||||||    || ||| |||| || ||
Sbjct: 1423 gaaacttt---tcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 1367

                                                                        
Query: 281  ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaaggacgaggtggc 340
            |||||| || || || ||||| || || |||||||||||||||||||||||||||| |||
Sbjct: 1366 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaaggacgaggaggc 1307

                                                
Query: 341  ggaaaccgcaatcgagggcctgatctgctcgagctg 376
             || || || | ||||||| ||||||||||||||||
Sbjct: 1306 cgatactgccaccgagggcttgatctgctcgagctg 1271
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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03,
              from chromosome 3, complete sequence
          Length = 125800

 Score =  139 bits (70), Expect = 7e-30
 Identities = 183/220 (83%), Gaps = 3/220 (1%)
 Strand = Plus / Minus

                                                                          
Query: 157    tatatacagactgaaaaatagactctggagtctacttattaatagtctgaaaaaactaag 216
              ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||  |||||||
Sbjct: 125740 tatatacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaag 125681

                                                                          
Query: 217    agctgggattttctttcagtctgcaagaggctgactactctgtgggggtggatcttgtat 276
              | | |  | |||   ||||||||||||||||||||||||||||    || ||| |||| |
Sbjct: 125680 aaccgaaacttt---tcagtctgcaagaggctgactactctgtaatagtcgattttgtgt 125624

                                                                          
Query: 277    catcggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaaggacgagg 336
              | |||||||| || || || ||||| || || ||||||||||||||||||||||||||||
Sbjct: 125623 cgtcggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaaggacgagg 125564

                                                      
Query: 337    tggcggaaaccgcaatcgagggcctgatctgctcgagctg 376
               ||| || || || | ||||||| ||||||||||||||||
Sbjct: 125563 aggccgatactgccaccgagggcttgatctgctcgagctg 125524
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>gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, complete sequence
          Length = 161160

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 152    aactctatatacagactgaaaaa 174
              |||||||||||||||||||||||
Sbjct: 155387 aactctatatacagactgaaaaa 155409
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 357    ggcctgatctgctcgagctgccg 379
              |||||||||||||||||||||||
Sbjct: 420228 ggcctgatctgctcgagctgccg 420206
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 357    ggcctgatctgctcgagctgccg 379
              |||||||||||||||||||||||
Sbjct: 361274 ggcctgatctgctcgagctgccg 361252
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>dbj|AK073061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033021A01, full
            insert sequence
          Length = 2391

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 357  ggcctgatctgctcgagctgccg 379
            |||||||||||||||||||||||
Sbjct: 2037 ggcctgatctgctcgagctgccg 2015
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 357    ggcctgatctgctcgagctgccg 379
              |||||||||||||||||||||||
Sbjct: 361274 ggcctgatctgctcgagctgccg 361252
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 357    ggcctgatctgctcgagctgccg 379
              |||||||||||||||||||||||
Sbjct: 420228 ggcctgatctgctcgagctgccg 420206
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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 357   ggcctgatctgctcgagctgccg 379
             |||||||||||||||||||||||
Sbjct: 68592 ggcctgatctgctcgagctgccg 68570
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>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141089

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 357    ggcctgatctgctcgagctgccg 379
              |||||||||||||||||||||||
Sbjct: 126544 ggcctgatctgctcgagctgccg 126566
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>gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, complete sequence
          Length = 103709

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 152   aactctatatacagactgaaaaa 174
             |||||||||||||||||||||||
Sbjct: 25345 aactctatatacagactgaaaaa 25323
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>gb|AC130826.4| Mus musculus BAC clone RP23-400F13 from chromosome 16, complete
             sequence
          Length = 186059

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 202   tctgaaaaaactaagagctgggattttct 230
             |||||||||| |||||||||||| |||||
Sbjct: 93844 tctgaaaaaaataagagctgggaatttct 93816
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>gb|AC099661.11| Homo sapiens 3 BAC RP11-110C15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155898

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     ccagatacaaatgaatttagg 107
              |||||||||||||||||||||
Sbjct: 132468 ccagatacaaatgaatttagg 132448
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>gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete sequence
          Length = 113862

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    acaaatgaatttaggaatgaa 113
             |||||||||||||||||||||
Sbjct: 53216 acaaatgaatttaggaatgaa 53236
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>ref|XM_464737.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 597

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 gtagtggcggtcgcagtagt 307
           ||||||||||||||||||||
Sbjct: 279 gtagtggcggtcgcagtagt 260
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>gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete sequence
          Length = 173785

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    aactctatatacagactgaa 171
              ||||||||||||||||||||
Sbjct: 112238 aactctatatacagactgaa 112219
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>gb|BC076483.1| Danio rerio zgc:92467, mRNA (cDNA clone MGC:92467 IMAGE:7043653),
            complete cds
          Length = 1420

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  ccaaaactctcttgccctct 148
            ||||||||||||||||||||
Sbjct: 1156 ccaaaactctcttgccctct 1175
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>gb|AC147379.3| Pan troglodytes BAC clone RP43-175C18 from 7, complete sequence
          Length = 219482

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    ttattaatagtctgaaaaaa 211
              ||||||||||||||||||||
Sbjct: 103976 ttattaatagtctgaaaaaa 103995
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>gb|AC145990.3| Pan troglodytes BAC clone RP43-168N19 from 7, complete sequence
          Length = 144496

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    ttattaatagtctgaaaaaa 211
              ||||||||||||||||||||
Sbjct: 140762 ttattaatagtctgaaaaaa 140781
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>emb|CT009723.4| Mouse DNA sequence from clone RP23-12L5 on chromosome 9, complete
             sequence
          Length = 210030

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 170   aaaaatagactctggagtctactt 193
             |||||| |||||||||||||||||
Sbjct: 33094 aaaaattgactctggagtctactt 33071
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>gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosome 2, complete sequence
          Length = 181527

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   tttctttcagtctgcaagag 245
             ||||||||||||||||||||
Sbjct: 82464 tttctttcagtctgcaagag 82445
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>gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosome 9, complete sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 170    aaaaatagactctggagtctactt 193
              |||||| |||||||||||||||||
Sbjct: 199654 aaaaattgactctggagtctactt 199677
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>gb|AC073323.5| Homo sapiens BAC clone RP11-332K15 from 7, complete sequence
          Length = 133911

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   ttattaatagtctgaaaaaa 211
             ||||||||||||||||||||
Sbjct: 56496 ttattaatagtctgaaaaaa 56515
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>emb|AL355339.7| Human DNA sequence from clone RP11-461K13 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 163565

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     ttttgaaacaccaaatgttc 22
             ||||||||||||||||||||
Sbjct: 74153 ttttgaaacaccaaatgttc 74172
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>gb|DQ100347.1| Zea mays 9,10-9',10' carotenoid cleavage dioxygenase 1 (CCD1) gene,
            complete cds
          Length = 8665

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  tggctcggctcgccggtgaa 328
            ||||||||||||||||||||
Sbjct: 6330 tggctcggctcgccggtgaa 6349
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>ref|NM_001003494.1| Danio rerio zgc:92467 (zgc:92467), mRNA
          Length = 1420

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  ccaaaactctcttgccctct 148
            ||||||||||||||||||||
Sbjct: 1156 ccaaaactctcttgccctct 1175
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>gb|AC106029.8| Homo sapiens chromosome 15, clone CTD-2538I11, complete sequence
          Length = 180591

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     acaaatgaatttaggaatga 112
              ||||||||||||||||||||
Sbjct: 143624 acaaatgaatttaggaatga 143605
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>gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, complete sequence
          Length = 188605

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     acaaatgaatttaggaatga 112
              ||||||||||||||||||||
Sbjct: 138484 acaaatgaatttaggaatga 138465
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>gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence
          Length = 178815

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     acaaatgaatttaggaatga 112
              ||||||||||||||||||||
Sbjct: 152752 acaaatgaatttaggaatga 152771
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>gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, complete sequence
          Length = 64373

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    acaaatgaatttaggaatga 112
             ||||||||||||||||||||
Sbjct: 16772 acaaatgaatttaggaatga 16791
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 288     gtagtggcggtcgcagtagt 307
               ||||||||||||||||||||
Sbjct: 7024168 gtagtggcggtcgcagtagt 7024149
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>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0495C02
          Length = 151467

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   gtagtggcggtcgcagtagt 307
             ||||||||||||||||||||
Sbjct: 27587 gtagtggcggtcgcagtagt 27568
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>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0470A03
          Length = 133167

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    gtagtggcggtcgcagtagt 307
              ||||||||||||||||||||
Sbjct: 117790 gtagtggcggtcgcagtagt 117771
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>emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on chromosome 2, complete
             sequence
          Length = 145652

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   tttctttcagtctgcaagag 245
             ||||||||||||||||||||
Sbjct: 46654 tttctttcagtctgcaagag 46635
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>gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, complete sequence
          Length = 181063

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 173    aatagactctggagtctacttattaata 200
              ||||| |||||||||| |||||||||||
Sbjct: 116693 aatagtctctggagtccacttattaata 116720
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>gb|AC174070.1| Homo sapiens chromosome 15 clone WI2-635I4, complete sequence
          Length = 38013

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    acaaatgaatttaggaatga 112
             ||||||||||||||||||||
Sbjct: 12922 acaaatgaatttaggaatga 12941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,697,825
Number of Sequences: 3902068
Number of extensions: 3697825
Number of successful extensions: 72066
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71842
Number of HSP's gapped (non-prelim): 219
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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