| Clone Name | rbast77a05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|BX914196.10| Zebrafish DNA sequence from clone DKEYP-71E8 in linkage group 7, complete sequence Length = 166715 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 tagatccatgctttgatgttgt 373 |||||||||||||||||||||| Sbjct: 53611 tagatccatgctttgatgttgt 53590
>emb|BX004988.5| Zebrafish DNA sequence from clone CH211-79C4 in linkage group 14, complete sequence Length = 166194 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 tagatccatgctttgatgttgt 373 |||||||||||||||||||||| Sbjct: 65806 tagatccatgctttgatgttgt 65785
>gb|AC090017.18| Homo sapiens 12q BAC RP11-471N19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 196962 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 102 actacaacacttcacacattttaca 126 |||||||||||||||||| |||||| Sbjct: 14506 actacaacacttcacacaatttaca 14482
>emb|BX005272.6| Zebrafish DNA sequence from clone DKEY-23D7, complete sequence Length = 215838 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 gatccatgctttgatgttgtc 374 ||||||||||||||||||||| Sbjct: 181898 gatccatgctttgatgttgtc 181878
>gb|AC161193.3| Mus musculus chromosome 8, clone RP23-308L22, complete sequence Length = 177860 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ccttcagagaaaccccaggt 61 |||||||||||||||||||| Sbjct: 38704 ccttcagagaaaccccaggt 38723
>gb|AC112964.8| Mus musculus chromosome 8, clone RP24-82M4, complete sequence Length = 193076 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ccttcagagaaaccccaggt 61 |||||||||||||||||||| Sbjct: 90667 ccttcagagaaaccccaggt 90686
>gb|AC120889.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0018K14, complete sequence Length = 152725 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tgcatattgttgtactaaga 149 |||||||||||||||||||| Sbjct: 50423 tgcatattgttgtactaaga 50442
>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0064E13, complete sequence Length = 150158 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tgcatattgttgtactaaga 149 |||||||||||||||||||| Sbjct: 139613 tgcatattgttgtactaaga 139632
>ref|NM_003410.2| Homo sapiens zinc finger protein, X-linked (ZFX), mRNA Length = 5811 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 acaacacttcacacatttta 124 |||||||||||||||||||| Sbjct: 5240 acaacacttcacacatttta 5259
>gb|AC122326.4| Mus musculus BAC clone RP23-337J18 from chromosome 10, complete sequence Length = 236165 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gccagagagctgctgctcct 328 |||||||||||||||||||| Sbjct: 193917 gccagagagctgctgctcct 193936
>emb|BX649356.19| Zebrafish DNA sequence from clone CH211-209H5 in linkage group 3, complete sequence Length = 200759 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 181908 gatccatgctttgatgttgt 181927
>emb|CR450770.21| Zebrafish DNA sequence from clone DKEY-161M5 in linkage group 8, complete sequence Length = 153753 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 103405 gatccatgctttgatgttgt 103424
>emb|CR385077.11| Zebrafish DNA sequence from clone CH211-262M14 in linkage group 15, complete sequence Length = 105764 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 atccatgctttgatgttgtcaatg 378 ||||||||||| |||||||||||| Sbjct: 46695 atccatgcttttatgttgtcaatg 46672
>gb|AC073237.3| Homo sapiens BAC clone RP11-792I5 from 7, complete sequence Length = 54291 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tcctcgccagagagctgctg 323 |||||||||||||||||||| Sbjct: 10927 tcctcgccagagagctgctg 10908
>gb|AC144511.1| Pan troglodytes BAC clone RP43-45C15 from 7, complete sequence Length = 153510 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tcctcgccagagagctgctg 323 |||||||||||||||||||| Sbjct: 10897 tcctcgccagagagctgctg 10878
>emb|BX640465.7| Zebrafish DNA sequence from clone CH211-198B21 in linkage group 9, complete sequence Length = 214459 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 20824 gatccatgctttgatgttgt 20805
>emb|CR391949.7| Zebrafish DNA sequence from clone CH211-149B20 in linkage group 9, complete sequence Length = 162252 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 351 gtagatccatgctttgatgttgtcaatg 378 ||||||||||||||| ||||||| |||| Sbjct: 156810 gtagatccatgcttttatgttgttaatg 156783
>emb|BX530056.17| Zebrafish DNA sequence from clone CH211-208I16 in linkage group 18, complete sequence Length = 235804 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 110797 gatccatgctttgatgttgt 110816
>emb|AL357127.17| Human DNA sequence from clone RP11-282I1 on chromosome 10 Contains the 3' end of a novel gene and a novel gene, complete sequence Length = 124343 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cagaaactacaacacttcac 116 |||||||||||||||||||| Sbjct: 35488 cagaaactacaacacttcac 35469
>emb|AL157407.11| Human DNA sequence from clone RP4-609E1 on chromosome 1p31.2-32.1 Contains the ARHI gene for ras homolog gene family member I, part of a novel gene (FLJ38762), ADP-ribosylation factor-like 5 (ARL5) pseudogene and the 3' end of a putative NFkB activating protein 373, complete sequence Length = 142396 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 gtcacactgaaattatcatt 41 |||||||||||||||||||| Sbjct: 12994 gtcacactgaaattatcatt 12975
>emb|X59739.1|HSZFX2 Human ZFX mRNA for put. transcription activator, isoform 2 Length = 5527 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 acaacacttcacacatttta 124 |||||||||||||||||||| Sbjct: 5064 acaacacttcacacatttta 5083
>emb|AL035592.1|SPCC1393 S.pombe chromosome III cosmid c1393 Length = 32625 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ccaaaagcaaaggaccaatt 217 |||||||||||||||||||| Sbjct: 165 ccaaaagcaaaggaccaatt 184
>emb|AL023518.2|SPCC1020 S.pombe chromosome III cosmid c1020 Length = 42460 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ccaaaagcaaaggaccaatt 217 |||||||||||||||||||| Sbjct: 42298 ccaaaagcaaaggaccaatt 42317
>emb|BX005379.9| Zebrafish DNA sequence from clone DKEY-184P9 in linkage group 21, complete sequence Length = 185814 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 77635 gatccatgctttgatgttgt 77616
>emb|BX511186.13| Zebrafish DNA sequence from clone DKEY-246J23 in linkage group 18, complete sequence Length = 138351 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 122709 gatccatgctttgatgttgt 122728
>emb|BX510906.21| Zebrafish DNA sequence from clone CH211-203M24 in linkage group 20, complete sequence Length = 70824 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 18597 gatccatgctttgatgttgt 18578
>emb|BX546500.7| Zebrafish DNA sequence from clone DKEY-15L19 in linkage group 23, complete sequence Length = 237446 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 11520 gatccatgctttgatgttgt 11501
>gb|BC030756.2| Homo sapiens cDNA clone IMAGE:4797449 Length = 1235 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 acaacacttcacacatttta 124 |||||||||||||||||||| Sbjct: 752 acaacacttcacacatttta 771
>emb|BX284673.9| Zebrafish DNA sequence from clone DKEY-71P21 in linkage group 13, complete sequence Length = 171564 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 atccatgctttgatgttgtcaatg 378 ||||||||||||||||||| |||| Sbjct: 100516 atccatgctttgatgttgttaatg 100539
>emb|BX682550.7| Zebrafish DNA sequence from clone DKEY-93N13 in linkage group 3, complete sequence Length = 149762 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 102079 gatccatgctttgatgttgt 102098
>ref|NM_136727.2| Drosophila melanogaster CAP CG18408-RA, transcript variant A (CAP), mRNA Length = 7846 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 aaccccaggtacataagtac 71 |||||||||||||||||||| Sbjct: 4633 aaccccaggtacataagtac 4652
>gb|AC079880.6| Homo sapiens BAC clone RP11-453E17 from 4, complete sequence Length = 166862 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 acaacacttcacacatttta 124 |||||||||||||||||||| Sbjct: 53806 acaacacttcacacatttta 53825
>gb|AF448043.1|AF448043 Pseudomonas sp. SOD-3 16S ribosomal RNA gene, partial sequence Length = 1401 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 ttcacatccatctcaccaaccacc 239 ||||||||||||| |||||||||| Sbjct: 542 ttcacatccatcttaccaaccacc 519
>gb|AC026696.5| Homo sapiens chromosome 5 clone CTC-348L14, complete sequence Length = 125862 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 tgttcaatgactttcttccc 419 |||||||||||||||||||| Sbjct: 22738 tgttcaatgactttcttccc 22757
>emb|BX682548.7| Zebrafish DNA sequence from clone DKEY-94A14 in linkage group 2, complete sequence Length = 111741 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 2852 gatccatgctttgatgttgt 2833
>gb|AC016568.5| Homo sapiens chromosome 5 clone CTC-566C5, complete sequence Length = 220932 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 tgttcaatgactttcttccc 419 |||||||||||||||||||| Sbjct: 5719 tgttcaatgactttcttccc 5700
>gb|AC007417.5| Drosophila melanogaster, chromosome 2R, region 47A-47B, BAC clone BACR48F07, complete sequence Length = 175681 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 aaccccaggtacataagtac 71 |||||||||||||||||||| Sbjct: 84623 aaccccaggtacataagtac 84642
>ref|NM_001022950.1| Schizosaccharomyces pombe 972h- P-type proton ATPase (SPCC1020.01z), partial mRNA Length = 3033 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ccaaaagcaaaggaccaatt 217 |||||||||||||||||||| Sbjct: 1558 ccaaaagcaaaggaccaatt 1577
>emb|BX276087.14| Zebrafish DNA sequence from clone CH211-270M20 in linkage group 10, complete sequence Length = 167208 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 104575 gatccatgctttgatgttgt 104594
>emb|BX890610.8| Zebrafish DNA sequence from clone DKEY-122C9, complete sequence Length = 189827 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 acaccctgcatattgttgta 143 |||||||||||||||||||| Sbjct: 105059 acaccctgcatattgttgta 105078
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tgcatattgttgtactaaga 149 |||||||||||||||||||| Sbjct: 20130404 tgcatattgttgtactaaga 20130423
>gb|AC175706.2| Mus musculus BAC clone RP24-307B22 from chromosome y, complete sequence Length = 186810 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 aaggaccaattcacatccat 226 |||||||||||||||||||| Sbjct: 139100 aaggaccaattcacatccat 139081
>emb|BX571790.8| Zebrafish DNA sequence from clone CH211-199M3 in linkage group 20, complete sequence Length = 200944 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 27574 gatccatgctttgatgttgt 27555
>emb|BX601646.5| Zebrafish DNA sequence from clone CH211-204J16 in linkage group 19, complete sequence Length = 163533 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 115440 gatccatgctttgatgttgt 115421
>emb|BX470188.11| Zebrafish DNA sequence from clone DKEY-206F10 in linkage group 20, complete sequence Length = 167082 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 120979 gatccatgctttgatgttgt 120998
>emb|AL732386.13| Zebrafish DNA sequence from clone XX-35D8 in linkage group 9, complete sequence Length = 50895 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 8189 gatccatgctttgatgttgt 8208
>emb|BX004853.7| Zebrafish DNA sequence from clone DKEY-13O11, complete sequence Length = 182526 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 79237 gatccatgctttgatgttgt 79256
>gb|AE003830.3| Drosophila melanogaster chromosome 2R, section 20 of 73 of the complete sequence Length = 240481 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 aaccccaggtacataagtac 71 |||||||||||||||||||| Sbjct: 160779 aaccccaggtacataagtac 160798
>emb|CR407543.6| Zebrafish DNA sequence from clone CH211-63M22 in linkage group 10, complete sequence Length = 105526 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 86592 gatccatgctttgatgttgt 86573
>gb|AC162939.6| Mus musculus BAC clone RP23-97G12 from chromosome 10, complete sequence Length = 247228 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 gccagagagctgctgctcct 328 |||||||||||||||||||| Sbjct: 183214 gccagagagctgctgctcct 183195
>dbj|AB053478.1| Drosophila melanogaster dcp mRNA for DCAPL1, complete cds Length = 7746 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 aaccccaggtacataagtac 71 |||||||||||||||||||| Sbjct: 5227 aaccccaggtacataagtac 5246
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tgcatattgttgtactaaga 149 |||||||||||||||||||| Sbjct: 20415503 tgcatattgttgtactaaga 20415522
>gb|AC002404.1|AC002404 Human Chromosome X PAC RPCI1-290C9 from the Pieter de Jong Human PAC library; complete sequence Length = 110816 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 acaacacttcacacatttta 124 |||||||||||||||||||| Sbjct: 28487 acaacacttcacacatttta 28468
>emb|AL954771.5| Zebrafish DNA sequence from clone CH211-220B15 in linkage group 21, complete sequence Length = 197721 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gatccatgctttgatgttgt 373 |||||||||||||||||||| Sbjct: 29271 gatccatgctttgatgttgt 29290
>dbj|AB209892.1| Homo sapiens mRNA for X-linked zinc finger protein variant protein Length = 7337 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 acaacacttcacacatttta 124 |||||||||||||||||||| Sbjct: 5252 acaacacttcacacatttta 5271
>gb|M60471.1|YSPPMA2A S.pombe H+-ATPase (pma2) gene, complete cds Length = 3500 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ccaaaagcaaaggaccaatt 217 |||||||||||||||||||| Sbjct: 1734 ccaaaagcaaaggaccaatt 1753 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,775,222 Number of Sequences: 3902068 Number of extensions: 3775222 Number of successful extensions: 88608 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88482 Number of HSP's gapped (non-prelim): 126 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)