>MURC_BACSK (Q5WEA8) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 435

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 26  GVRSRRTTTGMFAHVTGIKENASAYLGEASVHGPNAST 139
           G   + +TTG+ AHV G  E  S  +G+ +  G   ST
Sbjct: 108 GSHGKTSTTGLLAHVLGSVEPTSYLIGDGTGKGAANST 145

>GPI1_SCHPO (O14357) N-acetylglucosaminyl-phosphatidylinositol biosynthetic|
           protein gpi1
          Length = 653

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/63 (23%), Positives = 34/63 (53%)
 Frame = -2

Query: 191 PMNKFVLASTLIHSAPSKSMHSVHEQMLLLSTLMHFP*FQSREQTFQSSYVSTLLRIIIS 12
           P++  +L  + I+ +  +     H+Q+LL    +HFP  + +E +++ S  S L+ ++  
Sbjct: 144 PLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP--RRKENSWKRSLRSGLIELLNQ 201

Query: 11  VFQ 3
            F+
Sbjct: 202 SFE 204

>ACHA3_CHICK (P09481) Neuronal acetylcholine receptor protein, alpha-3 subunit|
           precursor
          Length = 496

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 108 KHLFMDRMHRLRWSGVDQGGSQHKFIHGPMGR 203
           KH++ D  ++LRW+ VD GG++  FI  P G+
Sbjct: 79  KHIWND--YKLRWNPVDYGGAE--FIRVPSGQ 106

>YAMB_SCHPO (Q10064) Hypothetical protein C1F5.11c in chromosome I|
          Length = 3655

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
 Frame = -2

Query: 176 VLASTLIHSAPS-------KSMHSVHEQMLLLSTLMHFP*FQSREQTFQSSYVSTLLRII 18
           V A+  IH  PS        ++ +  +Q+    TL H P F    ++  S +++ LLR +
Sbjct: 594 VFATIFIHLEPSIFLKVFETNLPTFFDQLKKNLTLFHIPQFLLSNESTSSKFLNILLRFL 653

Query: 17  IS 12
           +S
Sbjct: 654 LS 655

>SC6A4_RAT (P31652) Sodium-dependent serotonin transporter (5HT transporter)|
           (5HTT)
          Length = 630

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 52  WNVCSRDWN*GKCISVLRRSICSWT 126
           W  C+  WN G C +   +   +WT
Sbjct: 197 WTSCTNSWNTGNCTNYFAQDNITWT 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,686,229
Number of Sequences: 219361
Number of extensions: 679323
Number of successful extensions: 1746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1746
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)