| Clone Name | rbast76e09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF411228.1|AF411228 Hordeum vulgare ascorbate peroxidase mRNA, complete cds Length = 1138 Score = 359 bits (181), Expect = 4e-96 Identities = 184/185 (99%) Strand = Plus / Minus Query: 19 catttcgtcctcgacagggaaaaacaaccggaaaggaactacataacacttagcggttca 78 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1116 catttcgttctcgacagggaaaaacaaccggaaaggaactacataacacttagcggttca 1057 Query: 79 cactacaagcaggtccatcacaagatacgaggcgtcaaaagcaaaacaatgcaacacccc 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1056 cactacaagcaggtccatcacaagatacgaggcgtcaaaagcaaaacaatgcaacacccc 997 Query: 139 atcgaccgaccgatctaatccaaatccagacaaacacatgacatggccactgggccgacg 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 996 atcgaccgaccgatctaatccaaatccagacaaacacatgacatggccactgggccgacg 937 Query: 199 acaga 203 ||||| Sbjct: 936 acaga 932 Score = 184 bits (93), Expect = 1e-43 Identities = 96/97 (98%) Strand = Plus / Minus Query: 276 attaccgaccctcaggcgccgatcttgaatcagcagcagccctcaaacgcctcgccgaat 335 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 877 attaccgaccctcaggcgccgatcttgaatcagcagcagccctcagacgcctcgccgaat 818 Query: 336 ccaagttcagagagcttgaggtgtgcctcggcgtagt 372 ||||||||||||||||||||||||||||||||||||| Sbjct: 817 ccaagttcagagagcttgaggtgtgcctcggcgtagt 781
>gb|BT009090.1| Triticum aestivum clone wkm2c.pk0002.f7:fis, full insert mRNA sequence Length = 973 Score = 204 bits (103), Expect = 1e-49 Identities = 152/167 (91%), Gaps = 6/167 (3%) Strand = Plus / Minus Query: 21 tttcgtcctcgacagggaaaaa-----caaccggaaaggaactacataacacttagcggt 75 ||||||||||||||||||| || ||||||||||||||||||||||||||| || || Sbjct: 901 tttcgtcctcgacagggaataacaattcaaccggaaaggaactacataacacttggcagt 842 Query: 76 tcacactacaagcaggtccatcacaagatacgaggcgtcaaaagcaaaacaatgcaacac 135 ||| |||||||||| | ||||||||||| |||||||||| |||||||||||||||||||| Sbjct: 841 tcatactacaagcacgcccatcacaagacacgaggcgtc-aaagcaaaacaatgcaacac 783 Query: 136 cccatcgaccgaccgatctaatccaaatccagacaaacacatgacat 182 |||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 782 cccatcgaccgacccatctaatccaagtccagacaaacacatgacat 736 Score = 105 bits (53), Expect = 1e-19 Identities = 86/97 (88%) Strand = Plus / Minus Query: 276 attaccgaccctcaggcgccgatcttgaatcagcagcagccctcaaacgcctcgccgaat 335 |||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| Sbjct: 694 attaacgaccttcaggcgccgagcttgaatcagcagcagccctcaacagcctcgccaaat 635 Query: 336 ccaagttcagagagcttgaggtgtgcctcggcgtagt 372 || | ||| || ||||||||||||||||| ||||||| Sbjct: 634 cccaattcggatagcttgaggtgtgcctcagcgtagt 598
>ref|XM_479627.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 333 aatccaagttcagagagcttgaggtgtgcctcggcgta 370 ||||| |||||||||||||||||||| ||||||||||| Sbjct: 819 aatcccagttcagagagcttgaggtgggcctcggcgta 782
>ref|XM_506596.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E10.12 mRNA Length = 1392 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 333 aatccaagttcagagagcttgaggtgtgcctcggcgta 370 ||||| |||||||||||||||||||| ||||||||||| Sbjct: 815 aatcccagttcagagagcttgaggtgggcctcggcgta 778
>dbj|AB053297.1| Oryza sativa (japonica cultivar-group) APXb mRNA for L-ascorbate peroxidase, complete cds Length = 1160 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 333 aatccaagttcagagagcttgaggtgtgcctcggcgta 370 ||||| |||||||||||||||||||| ||||||||||| Sbjct: 806 aatcccagttcagagagcttgaggtgggcctcggcgta 769
>dbj|AK102751.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106K23, full insert sequence Length = 2215 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 333 aatccaagttcagagagcttgaggtgtgcctcggcgta 370 ||||| |||||||||||||||||||| ||||||||||| Sbjct: 819 aatcccagttcagagagcttgaggtgggcctcggcgta 782
>dbj|AK068430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156P11, full insert sequence Length = 1393 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 333 aatccaagttcagagagcttgaggtgtgcctcggcgta 370 ||||| |||||||||||||||||||| ||||||||||| Sbjct: 815 aatcccagttcagagagcttgaggtgggcctcggcgta 778
>dbj|AK061715.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H06, full insert sequence Length = 1110 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 333 aatccaagttcagagagcttgaggtgtgcctcggcgta 370 ||||| |||||||||||||||||||| ||||||||||| Sbjct: 819 aatcccagttcagagagcttgaggtgggcctcggcgta 782
>dbj|AB050724.1| Oryza sativa (japonica cultivar-group) APXb mRNA for ascorbate peroxidase, complete cds Length = 1058 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 333 aatccaagttcagagagcttgaggtgtgcctcggcgta 370 ||||| |||||||||||||||||||| ||||||||||| Sbjct: 801 aatcccagttcagagagcttgaggtgggcctcggcgta 764
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 8e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 339 agttcagagagcttgaggtgtgcctcggcgta 370 |||||||||||||||||||| ||||||||||| Sbjct: 29530846 agttcagagagcttgaggtgggcctcggcgta 29530877
>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0627E10 Length = 163388 Score = 56.0 bits (28), Expect = 8e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 339 agttcagagagcttgaggtgtgcctcggcgta 370 |||||||||||||||||||| ||||||||||| Sbjct: 57518 agttcagagagcttgaggtgggcctcggcgta 57549
>dbj|D25238.1|RICSS622CC Oryza sativa SS622 mRNA for ascorbate peroxidase, partial cds Length = 273 Score = 54.0 bits (27), Expect = 3e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 333 aatccaagttcagagagcttgaggtgtgcctcggcgta 370 ||||| | |||||||||||||||||| ||||||||||| Sbjct: 140 aatcccanttcagagagcttgaggtgggcctcggcgta 103
>gb|DQ097722.1| Arachis hypogaea cytosolic ascorbate peroxidase mRNA, complete cds Length = 1046 Score = 46.1 bits (23), Expect = 0.080 Identities = 32/35 (91%) Strand = Plus / Minus Query: 336 ccaagttcagagagcttgaggtgtgcctcggcgta 370 ||||| ||||||||||| ||||||||||| ||||| Sbjct: 816 ccaagctcagagagcttaaggtgtgcctcagcgta 782
>emb|AL137857.29| Human DNA sequence from clone RP5-1166H10 on chromosome 1p33-35.1 Contains the MATN1 gene for matrilin 1 cartilage matrix protein, a novel gene (FLJ46197, FLJ33163), the 3' end of the gene for Lysosomal-associated multispanning membrane protein-5 (LAPTM5) and a CpG island, complete sequence Length = 152042 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 117 aagcaaaacaatgcaacacccc 138 |||||||||||||||||||||| Sbjct: 34235 aagcaaaacaatgcaacacccc 34256
>ref|NM_202299.1| Arabidopsis thaliana unknown protein AT1G54575 mRNA, complete cds Length = 638 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 gtcaaaagcaaaacaatgcaacacc 136 |||||||||||||||||| |||||| Sbjct: 221 gtcaaaagcaaaacaatgaaacacc 245
>gb|AY773826.1| Arabidopsis thaliana clone pENTR221-At1g54575 hypothetical protein (At1g54575) gene, complete cds Length = 309 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 gtcaaaagcaaaacaatgcaacacc 136 |||||||||||||||||| |||||| Sbjct: 188 gtcaaaagcaaaacaatgaaacacc 212
>gb|AY735542.1| Arabidopsis thaliana hypothetical protein AT1G54575 mRNA, complete cds Length = 670 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 gtcaaaagcaaaacaatgcaacacc 136 |||||||||||||||||| |||||| Sbjct: 234 gtcaaaagcaaaacaatgaaacacc 258
>gb|BT015723.1| Arabidopsis thaliana At1g54575 gene, complete cds Length = 309 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 gtcaaaagcaaaacaatgcaacacc 136 |||||||||||||||||| |||||| Sbjct: 188 gtcaaaagcaaaacaatgaaacacc 212
>gb|BT015058.1| Arabidopsis thaliana At1g54575 gene, complete cds Length = 573 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 gtcaaaagcaaaacaatgcaacacc 136 |||||||||||||||||| |||||| Sbjct: 198 gtcaaaagcaaaacaatgaaacacc 222
>gb|AC119181.11| Mus musculus chromosome 18, clone RP24-111I16, complete sequence Length = 195506 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 agttcagagagcttgaggtgt 359 ||||||||||||||||||||| Sbjct: 177385 agttcagagagcttgaggtgt 177365
>dbj|AK221685.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-90-M11 Length = 654 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 gtcaaaagcaaaacaatgcaacacc 136 |||||||||||||||||| |||||| Sbjct: 234 gtcaaaagcaaaacaatgaaacacc 258
>gb|AC005388.1|T22H22 Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete sequence Length = 87768 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 gtcaaaagcaaaacaatgcaacacc 136 |||||||||||||||||| |||||| Sbjct: 15805 gtcaaaagcaaaacaatgaaacacc 15829
>gb|AC019176.4|AC019176 Homo sapiens BAC clone RP11-221H10 from 8, complete sequence Length = 170680 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 gtcaaaagcaaaacaatgcaa 132 ||||||||||||||||||||| Sbjct: 63442 gtcaaaagcaaaacaatgcaa 63462
>emb|BX818219.1|CNS0AE3B Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL67ZF04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 631 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 gtcaaaagcaaaacaatgcaacacc 136 |||||||||||||||||| |||||| Sbjct: 214 gtcaaaagcaaaacaatgaaacacc 238
>emb|BX818269.1|CNS0AB1D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL6ZF07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 599 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 gtcaaaagcaaaacaatgcaacacc 136 |||||||||||||||||| |||||| Sbjct: 205 gtcaaaagcaaaacaatgaaacacc 229
>emb|BX817787.1|CNS0AAX6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL41ZD08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 630 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 gtcaaaagcaaaacaatgcaacacc 136 |||||||||||||||||| |||||| Sbjct: 221 gtcaaaagcaaaacaatgaaacacc 245
>emb|AL136293.5|CNS01DVX Human chromosome 14 DNA sequence BAC C-2555C10 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 226035 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 ccaaatccagacaaacacatg 178 ||||||||||||||||||||| Sbjct: 48820 ccaaatccagacaaacacatg 48800
>gb|AY831398.2| Dimocarpus longan cytosolic ascorbate peroxidase mRNA, partial cds Length = 868 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 aatccaagttcagagagctt 352 |||||||||||||||||||| Sbjct: 622 aatccaagttcagagagctt 603 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,068,074 Number of Sequences: 3902068 Number of extensions: 2068074 Number of successful extensions: 39340 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39294 Number of HSP's gapped (non-prelim): 45 length of query: 372 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 350 effective length of database: 17,147,199,772 effective search space: 6001519920200 effective search space used: 6001519920200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)