ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast76c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466920.2| Oryza sativa (japonica cultivar-group), mRNA 127 3e-26
2ref|XM_507511.1| PREDICTED Oryza sativa (japonica cultivar-group... 127 3e-26
3ref|XM_507510.1| PREDICTED Oryza sativa (japonica cultivar-group... 127 3e-26
4ref|XM_506875.2| PREDICTED Oryza sativa (japonica cultivar-group... 127 3e-26
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
6dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
7dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
8dbj|AK106111.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
9dbj|AK104431.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
10dbj|AK104329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
11dbj|AK071869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
12dbj|AK069959.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
13ref|XM_421859.1| PREDICTED: Gallus gallus similar to KIAA1843 pr... 44 0.31
14emb|CT010490.10| Mouse DNA sequence from clone RP23-148P12 on ch... 42 1.2
15gb|AC087898.19| Mus musculus strain C57BL/6J chromosome 16 clone... 42 1.2
16gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 4.9
17gb|AC112683.10| Mus musculus chromosome 17, clone RP23-332P1, co... 40 4.9
18gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, co... 40 4.9
19gb|AC156496.10| Mus musculus chromosome 7, clone RP24-246N21, co... 40 4.9
20gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete se... 40 4.9
21emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.9
22gb|AC114582.12| Mus musculus chromosome 7, clone RP23-192M19, co... 40 4.9
23ref|XM_579817.1| PREDICTED: Rattus norvegicus LOC498329 (LOC4983... 40 4.9
24gb|AC154476.2| Mus musculus BAC clone RP24-133E16 from 17, compl... 40 4.9
25emb|AL669975.9| Mouse DNA sequence from clone RP23-218H24 on chr... 40 4.9
26emb|AL670758.9| Mouse DNA sequence from clone RP23-235O16 on chr... 40 4.9
27emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6,... 40 4.9 
>ref|XM_466920.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1807

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  ctaggagaaggccgtgggaggcatcttcttatcacccaaaaagtgggtgaagaggctgag 321
            ||||| ||| ||||| |||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 1633 ctaggggaacgccgtcggaggcatcttcttgtcagccaagaagtggctgaagaggctgag 1574

                                                            
Query: 322  cgcctgcctcggcgcgtgcatagggacctcgtgcccggctccgcggat 369
            ||||||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 1573 cgcctgcctcggcgcgtgcaggggaacctcgtgcccggcgccgcggat 1526
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>ref|XM_507511.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1643_A10.33-1
            mRNA
          Length = 1701

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  ctaggagaaggccgtgggaggcatcttcttatcacccaaaaagtgggtgaagaggctgag 321
            ||||| ||| ||||| |||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 1510 ctaggggaacgccgtcggaggcatcttcttgtcagccaagaagtggctgaagaggctgag 1451

                                                            
Query: 322  cgcctgcctcggcgcgtgcatagggacctcgtgcccggctccgcggat 369
            ||||||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 1450 cgcctgcctcggcgcgtgcaggggaacctcgtgcccggcgccgcggat 1403
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>ref|XM_507510.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1643_A10.33-1
            mRNA
          Length = 1704

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  ctaggagaaggccgtgggaggcatcttcttatcacccaaaaagtgggtgaagaggctgag 321
            ||||| ||| ||||| |||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 1513 ctaggggaacgccgtcggaggcatcttcttgtcagccaagaagtggctgaagaggctgag 1454

                                                            
Query: 322  cgcctgcctcggcgcgtgcatagggacctcgtgcccggctccgcggat 369
            ||||||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 1453 cgcctgcctcggcgcgtgcaggggaacctcgtgcccggcgccgcggat 1406
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>ref|XM_506875.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1643_A10.33-1
            mRNA
          Length = 1720

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  ctaggagaaggccgtgggaggcatcttcttatcacccaaaaagtgggtgaagaggctgag 321
            ||||| ||| ||||| |||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 1515 ctaggggaacgccgtcggaggcatcttcttgtcagccaagaagtggctgaagaggctgag 1456

                                                            
Query: 322  cgcctgcctcggcgcgtgcatagggacctcgtgcccggctccgcggat 369
            ||||||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 1455 cgcctgcctcggcgcgtgcaggggaacctcgtgcccggcgccgcggat 1408
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                            
Query: 262      ctaggagaaggccgtgggaggcatcttcttatcacccaaaaagtgggtgaagaggctgag 321
                ||||| ||| ||||| |||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 25468395 ctaggggaacgccgtcggaggcatcttcttgtcagccaagaagtggctgaagaggctgag 25468336

                                                                
Query: 322      cgcctgcctcggcgcgtgcatagggacctcgtgcccggctccgcggat 369
                ||||||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 25468335 cgcctgcctcggcgcgtgcaggggaacctcgtgcccggcgccgcggat 25468288
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>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1643_A10
          Length = 130037

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                          
Query: 262    ctaggagaaggccgtgggaggcatcttcttatcacccaaaaagtgggtgaagaggctgag 321
              ||||| ||| ||||| |||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 124057 ctaggggaacgccgtcggaggcatcttcttgtcagccaagaagtggctgaagaggctgag 123998

                                                              
Query: 322    cgcctgcctcggcgcgtgcatagggacctcgtgcccggctccgcggat 369
              ||||||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 123997 cgcctgcctcggcgcgtgcaggggaacctcgtgcccggcgccgcggat 123950
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>dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1626_B09
          Length = 58749

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                         
Query: 262   ctaggagaaggccgtgggaggcatcttcttatcacccaaaaagtgggtgaagaggctgag 321
             ||||| ||| ||||| |||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 12945 ctaggggaacgccgtcggaggcatcttcttgtcagccaagaagtggctgaagaggctgag 12886

                                                             
Query: 322   cgcctgcctcggcgcgtgcatagggacctcgtgcccggctccgcggat 369
             ||||||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 12885 cgcctgcctcggcgcgtgcaggggaacctcgtgcccggcgccgcggat 12838
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>dbj|AK106111.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-D11, full
            insert sequence
          Length = 1701

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  ctaggagaaggccgtgggaggcatcttcttatcacccaaaaagtgggtgaagaggctgag 321
            ||||| ||| ||||| |||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 1510 ctaggggaacgccgtcggaggcatcttcttgtcagccaagaagtggctgaagaggctgag 1451

                                                            
Query: 322  cgcctgcctcggcgcgtgcatagggacctcgtgcccggctccgcggat 369
            ||||||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 1450 cgcctgcctcggcgcgtgcaggggaacctcgtgcccggcgccgcggat 1403
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>dbj|AK104431.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-H12, full
            insert sequence
          Length = 1704

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  ctaggagaaggccgtgggaggcatcttcttatcacccaaaaagtgggtgaagaggctgag 321
            ||||| ||| ||||| |||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 1513 ctaggggaacgccgtcggaggcatcttcttgtcagccaagaagtggctgaagaggctgag 1454

                                                            
Query: 322  cgcctgcctcggcgcgtgcatagggacctcgtgcccggctccgcggat 369
            ||||||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 1453 cgcctgcctcggcgcgtgcaggggaacctcgtgcccggcgccgcggat 1406
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>dbj|AK104329.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E12, full
            insert sequence
          Length = 1700

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  ctaggagaaggccgtgggaggcatcttcttatcacccaaaaagtgggtgaagaggctgag 321
            ||||| ||| ||||| |||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 1510 ctaggggaacgccgtcggaggcatcttcttgtcagccaagaagtggctgaagaggctgag 1451

                                                            
Query: 322  cgcctgcctcggcgcgtgcatagggacctcgtgcccggctccgcggat 369
            ||||||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 1450 cgcctgcctcggcgcgtgcaggggaacctcgtgcccggcgccgcggat 1403
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>dbj|AK071869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118K14, full
            insert sequence
          Length = 1807

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  ctaggagaaggccgtgggaggcatcttcttatcacccaaaaagtgggtgaagaggctgag 321
            ||||| ||| ||||| |||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 1633 ctaggggaacgccgtcggaggcatcttcttgtcagccaagaagtggctgaagaggctgag 1574

                                                            
Query: 322  cgcctgcctcggcgcgtgcatagggacctcgtgcccggctccgcggat 369
            ||||||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 1573 cgcctgcctcggcgcgtgcaggggaacctcgtgcccggcgccgcggat 1526
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>dbj|AK069959.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038G19, full
            insert sequence
          Length = 1720

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  ctaggagaaggccgtgggaggcatcttcttatcacccaaaaagtgggtgaagaggctgag 321
            ||||| ||| ||||| |||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 1514 ctaggggaacgccgtcggaggcatcttcttgtcagccaagaagtggctgaagaggctgag 1455

                                                            
Query: 322  cgcctgcctcggcgcgtgcatagggacctcgtgcccggctccgcggat 369
            ||||||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 1454 cgcctgcctcggcgcgtgcaggggaacctcgtgcccggcgccgcggat 1407
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>ref|XM_421859.1| PREDICTED: Gallus gallus similar to KIAA1843 protein (LOC424003),
           mRNA
          Length = 2433

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 215 cgagaacaaagaaaaggaagcccctg 240
           ||||||||||||||| ||||||||||
Sbjct: 894 cgagaacaaagaaaatgaagcccctg 919
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>emb|CT010490.10| Mouse DNA sequence from clone RP23-148P12 on chromosome 16, complete
            sequence
          Length = 206348

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 156  tatgacttcttgtttattaac 176
            |||||||||||||||||||||
Sbjct: 7279 tatgacttcttgtttattaac 7299
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>gb|AC087898.19| Mus musculus strain C57BL/6J chromosome 16 clone rp23-101h1, complete
             sequence
          Length = 196966

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 156   tatgacttcttgtttattaac 176
             |||||||||||||||||||||
Sbjct: 43075 tatgacttcttgtttattaac 43055
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 349     ctcgtgcccggctccgcgga 368
               ||||||||||||||||||||
Sbjct: 1973235 ctcgtgcccggctccgcgga 1973216
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>gb|AC112683.10| Mus musculus chromosome 17, clone RP23-332P1, complete sequence
          Length = 206979

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    gagaacaaagaaaaggaagc 235
              ||||||||||||||||||||
Sbjct: 202705 gagaacaaagaaaaggaagc 202724
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>gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, complete sequence
          Length = 286283

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  gagaacaaagaaaaggaagc 235
            ||||||||||||||||||||
Sbjct: 9738 gagaacaaagaaaaggaagc 9757
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>gb|AC156496.10| Mus musculus chromosome 7, clone RP24-246N21, complete sequence
          Length = 143815

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  gagaacaaagaaaaggaagc 235
            ||||||||||||||||||||
Sbjct: 2205 gagaacaaagaaaaggaagc 2224
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>gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete sequence
          Length = 130355

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   tagcattggccgagaacaaa 224
             ||||||||||||||||||||
Sbjct: 21113 tagcattggccgagaacaaa 21132
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    ctcgtgcccggctccgcgga 368
              ||||||||||||||||||||
Sbjct: 134859 ctcgtgcccggctccgcgga 134840
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>gb|AC114582.12| Mus musculus chromosome 7, clone RP23-192M19, complete sequence
          Length = 201839

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  gagaacaaagaaaaggaagc 235
            ||||||||||||||||||||
Sbjct: 4802 gagaacaaagaaaaggaagc 4783
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>ref|XM_579817.1| PREDICTED: Rattus norvegicus LOC498329 (LOC498329), mRNA
          Length = 1405

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 349 ctcgtgcccggctccgcgga 368
           ||||||||||||||||||||
Sbjct: 942 ctcgtgcccggctccgcgga 923
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>gb|AC154476.2| Mus musculus BAC clone RP24-133E16 from 17, complete sequence
          Length = 131820

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   gagaacaaagaaaaggaagc 235
             ||||||||||||||||||||
Sbjct: 70063 gagaacaaagaaaaggaagc 70044
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>emb|AL669975.9| Mouse DNA sequence from clone RP23-218H24 on chromosome X, complete
              sequence
          Length = 230634

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     acttgtttatttaagtgtgt 105
              ||||||||||||||||||||
Sbjct: 185706 acttgtttatttaagtgtgt 185687
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>emb|AL670758.9| Mouse DNA sequence from clone RP23-235O16 on chromosome X, complete
             sequence
          Length = 144854

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   agaacaaagaaaaggaagcc 236
             ||||||||||||||||||||
Sbjct: 87093 agaacaaagaaaaggaagcc 87074
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>emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6, complete sequence
          Length = 147211

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   gtgaagaggctgagcgcctg 327
             ||||||||||||||||||||
Sbjct: 56819 gtgaagaggctgagcgcctg 56800


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,142,548
Number of Sequences: 3902068
Number of extensions: 3142548
Number of successful extensions: 61098
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61001
Number of HSP's gapped (non-prelim): 97
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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