ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast76a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476004.1| Oryza sativa (japonica cultivar-group), predic... 196 4e-47
2gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome... 196 4e-47
3gb|AC105260.2| Oryza sativa (japonica cultivar-group) chromosome... 196 4e-47
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 196 4e-47
5dbj|AK070159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 4e-47
6dbj|AK103957.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 1e-44
7ref|XM_463388.1| Oryza sativa (japonica cultivar-group), predic... 184 2e-43
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
9dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
10dbj|AK104992.2| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
11dbj|AK120968.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
12dbj|AK101038.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
13gb|AY106728.1| Zea mays PCO091418 mRNA sequence 170 2e-39
14gb|BT016792.1| Zea mays clone Contig625 mRNA sequence 163 6e-37
15ref|XM_482871.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
16dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
17dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
18dbj|AK108789.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
19ref|NM_184292.2| Oryza sativa (japonica cultivar-group), mRNA 46 0.097
20dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.097
21dbj|AK068990.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.097
22gb|AY099487.1| Acinetobacter lwoffii protocatechuate 3,4-dioxyge... 44 0.38
23emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 44 0.38
24ref|XM_465232.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
25gb|AE014312.1| Homo sapiens chromosome 13q34 schizophrenia regio... 42 1.5
26emb|AL138954.16| Human DNA sequence from clone RP11-100K21 on ch... 42 1.5
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
28dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
29dbj|AK068924.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
30ref|NM_188290.1| Oryza sativa (japonica cultivar-group), predic... 40 6.0
31gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 6.0
32gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, comple... 40 6.0
33gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome 40 6.0
34gb|AY392416.1| Streptomyces clavuligerus plasmid pSCL2 clone con... 40 6.0
35gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 6.0
36emb|BX024333.1|CNS08QXT Single read from an extremity of a full-... 40 6.0
37emb|BX021372.1|CNS08ONK Single read from an extremity of a full-... 40 6.0
38emb|BX021328.1|CNS08OMC Single read from an extremity of a full-... 40 6.0
39emb|BX015809.1|CNS08KD1 Single read from an extremity of a full-... 40 6.0
40emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome... 40 6.0
41emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 40 6.0
42emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 6.0
43gb|AE006021.1| Caulobacter crescentus CB15 section 347 of 359 of... 40 6.0
44dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
45dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
46dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.0
47dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.0
48dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.0
49gb|AF117752.1|AF117752 Anopheles gambiae serine protease 2A (Sp2... 40 6.0
50ref|XM_310504.2| Anopheles gambiae str. PEST ENSANGP00000024359 ... 40 6.0
51dbj|AK103713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
52emb|Z22737.1|AELACDEH A.eutrophus genes for lactate dehydrogenas... 40 6.0
53emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 40 6.0
54gb|AD000017.1|MSGY409 Mycobacterium tuberculosis sequence from c... 40 6.0 
>ref|XM_476004.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1428

 Score =  196 bits (99), Expect = 4e-47
 Identities = 128/138 (92%)
 Strand = Plus / Minus

                                                                        
Query: 309  acgcgctggccgtcgccgtcgaacaccacccggaagccctgctgctgtatgttgccgatg 368
            ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1403 acgcgctgggcgtcgccgtcgaacaccacccggaacccctgctgctgtatgttgccgatg 1344

                                                                        
Query: 369  atggacacgccgccgtccgtgcccgcaaacgcgaagcanaacgtccctttcgagtccacc 428
            ||||| |||||||||||||| ||||| | ||||||||| ||||||||  ||| |||||||
Sbjct: 1343 atggagacgccgccgtccgttcccgccatcgcgaagcagaacgtcccgctcgtgtccacc 1284

                              
Query: 429  gggatcaggtagttctcc 446
            ||||||||||||||||||
Sbjct: 1283 gggatcaggtagttctcc 1266
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>gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0022J22, complete sequence
          Length = 142854

 Score =  196 bits (99), Expect = 4e-47
 Identities = 128/138 (92%)
 Strand = Plus / Plus

                                                                         
Query: 309   acgcgctggccgtcgccgtcgaacaccacccggaagccctgctgctgtatgttgccgatg 368
             ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 43122 acgcgctgggcgtcgccgtcgaacaccacccggaacccctgctgctgtatgttgccgatg 43181

                                                                         
Query: 369   atggacacgccgccgtccgtgcccgcaaacgcgaagcanaacgtccctttcgagtccacc 428
             ||||| |||||||||||||| ||||| | ||||||||| ||||||||  ||| |||||||
Sbjct: 43182 atggagacgccgccgtccgttcccgccatcgcgaagcagaacgtcccgctcgtgtccacc 43241

                               
Query: 429   gggatcaggtagttctcc 446
             ||||||||||||||||||
Sbjct: 43242 gggatcaggtagttctcc 43259
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>gb|AC105260.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_D04,
             complete sequence
          Length = 100800

 Score =  196 bits (99), Expect = 4e-47
 Identities = 128/138 (92%)
 Strand = Plus / Plus

                                                                         
Query: 309   acgcgctggccgtcgccgtcgaacaccacccggaagccctgctgctgtatgttgccgatg 368
             ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 85887 acgcgctgggcgtcgccgtcgaacaccacccggaacccctgctgctgtatgttgccgatg 85946

                                                                         
Query: 369   atggacacgccgccgtccgtgcccgcaaacgcgaagcanaacgtccctttcgagtccacc 428
             ||||| |||||||||||||| ||||| | ||||||||| ||||||||  ||| |||||||
Sbjct: 85947 atggagacgccgccgtccgttcccgccatcgcgaagcagaacgtcccgctcgtgtccacc 86006

                               
Query: 429   gggatcaggtagttctcc 446
             ||||||||||||||||||
Sbjct: 86007 gggatcaggtagttctcc 86024
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  196 bits (99), Expect = 4e-47
 Identities = 128/138 (92%)
 Strand = Plus / Plus

                                                                            
Query: 309      acgcgctggccgtcgccgtcgaacaccacccggaagccctgctgctgtatgttgccgatg 368
                ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 29159663 acgcgctgggcgtcgccgtcgaacaccacccggaacccctgctgctgtatgttgccgatg 29159722

                                                                            
Query: 369      atggacacgccgccgtccgtgcccgcaaacgcgaagcanaacgtccctttcgagtccacc 428
                ||||| |||||||||||||| ||||| | ||||||||| ||||||||  ||| |||||||
Sbjct: 29159723 atggagacgccgccgtccgttcccgccatcgcgaagcagaacgtcccgctcgtgtccacc 29159782

                                  
Query: 429      gggatcaggtagttctcc 446
                ||||||||||||||||||
Sbjct: 29159783 gggatcaggtagttctcc 29159800
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>dbj|AK070159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046M06, full
            insert sequence
          Length = 1714

 Score =  196 bits (99), Expect = 4e-47
 Identities = 128/138 (92%)
 Strand = Plus / Minus

                                                                        
Query: 309  acgcgctggccgtcgccgtcgaacaccacccggaagccctgctgctgtatgttgccgatg 368
            ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1513 acgcgctgggcgtcgccgtcgaacaccacccggaacccctgctgctgtatgttgccgatg 1454

                                                                        
Query: 369  atggacacgccgccgtccgtgcccgcaaacgcgaagcanaacgtccctttcgagtccacc 428
            ||||| |||||||||||||| ||||| | ||||||||| ||||||||  ||| |||||||
Sbjct: 1453 atggagacgccgccgtccgttcccgccatcgcgaagcagaacgtcccgctcgtgtccacc 1394

                              
Query: 429  gggatcaggtagttctcc 446
            ||||||||||||||||||
Sbjct: 1393 gggatcaggtagttctcc 1376
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>dbj|AK103957.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B02, full
            insert sequence
          Length = 1639

 Score =  188 bits (95), Expect = 1e-44
 Identities = 127/138 (92%)
 Strand = Plus / Minus

                                                                        
Query: 309  acgcgctggccgtcgccgtcgaacaccacccggaagccctgctgctgtatgttgccgatg 368
            ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1436 acgcgctgggcgtcgccgtcgaacaccacccggaacccctgctgctgtatgttgccgatg 1377

                                                                        
Query: 369  atggacacgccgccgtccgtgcccgcaaacgcgaagcanaacgtccctttcgagtccacc 428
            ||||| |||||||||||||| ||||| | ||||||||| ||||||||  ||| | |||||
Sbjct: 1376 atggagacgccgccgtccgttcccgccatcgcgaagcagaacgtcccgctcgtgcccacc 1317

                              
Query: 429  gggatcaggtagttctcc 446
            ||||||||||||||||||
Sbjct: 1316 gggatcaggtagttctcc 1299
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>ref|XM_463388.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1503

 Score =  184 bits (93), Expect = 2e-43
 Identities = 140/156 (89%)
 Strand = Plus / Minus

                                                                        
Query: 291  cccttgggcgtgaaggcgacgcgctggccgtcgccgtcgaacaccacccggaagccctgc 350
            |||||||||  |||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1496 cccttgggcacgaagccgaggcgctggccgtcgccgtcgaacaccacgcggaagccctgc 1437

                                                                        
Query: 351  tgctgtatgttgccgatgatggacacgccgccgtccgtgcccgcaaacgcgaagcanaac 410
            ||||| ||||| ||||||||||| ||||||||||| ||||| || ||||||||||| || 
Sbjct: 1436 tgctggatgttcccgatgatggagacgccgccgtcggtgccggcgaacgcgaagcagaag 1377

                                                
Query: 411  gtccctttcgagtccaccgggatcaggtagttctcc 446
            || ||  |||||||||||||||||||||||||||||
Sbjct: 1376 gtgcccctcgagtccaccgggatcaggtagttctcc 1341
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  184 bits (93), Expect = 2e-43
 Identities = 140/156 (89%)
 Strand = Plus / Minus

                                                                            
Query: 291      cccttgggcgtgaaggcgacgcgctggccgtcgccgtcgaacaccacccggaagccctgc 350
                |||||||||  |||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 23512643 cccttgggcacgaagccgaggcgctggccgtcgccgtcgaacaccacgcggaagccctgc 23512584

                                                                            
Query: 351      tgctgtatgttgccgatgatggacacgccgccgtccgtgcccgcaaacgcgaagcanaac 410
                ||||| ||||| ||||||||||| ||||||||||| ||||| || ||||||||||| || 
Sbjct: 23512583 tgctggatgttcccgatgatggagacgccgccgtcggtgccggcgaacgcgaagcagaag 23512524

                                                    
Query: 411      gtccctttcgagtccaccgggatcaggtagttctcc 446
                || ||  |||||||||||||||||||||||||||||
Sbjct: 23512523 gtgcccctcgagtccaccgggatcaggtagttctcc 23512488



 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 422     gtccaccgggatcaggtagttct 444
               |||||||||||||||||||||||
Sbjct: 2120895 gtccaccgggatcaggtagttct 2120873



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 310     cgcgctggccgtcgccgtcg 329
               ||||||||||||||||||||
Sbjct: 5506750 cgcgctggccgtcgccgtcg 5506769



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 345     ccctgctgctgtatgttgccgatgatggacac 376
               ||||||||||| | ||| ||||||||||||||
Sbjct: 2120972 ccctgctgctgcacgttcccgatgatggacac 2120941
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>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0025A05
          Length = 154298

 Score =  184 bits (93), Expect = 2e-43
 Identities = 140/156 (89%)
 Strand = Plus / Minus

                                                                         
Query: 291   cccttgggcgtgaaggcgacgcgctggccgtcgccgtcgaacaccacccggaagccctgc 350
             |||||||||  |||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 75948 cccttgggcacgaagccgaggcgctggccgtcgccgtcgaacaccacgcggaagccctgc 75889

                                                                         
Query: 351   tgctgtatgttgccgatgatggacacgccgccgtccgtgcccgcaaacgcgaagcanaac 410
             ||||| ||||| ||||||||||| ||||||||||| ||||| || ||||||||||| || 
Sbjct: 75888 tgctggatgttcccgatgatggagacgccgccgtcggtgccggcgaacgcgaagcagaag 75829

                                                 
Query: 411   gtccctttcgagtccaccgggatcaggtagttctcc 446
             || ||  |||||||||||||||||||||||||||||
Sbjct: 75828 gtgcccctcgagtccaccgggatcaggtagttctcc 75793
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>dbj|AK104992.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G01, full
           insert sequence
          Length = 1142

 Score =  184 bits (93), Expect = 2e-43
 Identities = 140/156 (89%)
 Strand = Plus / Minus

                                                                       
Query: 291 cccttgggcgtgaaggcgacgcgctggccgtcgccgtcgaacaccacccggaagccctgc 350
           |||||||||  |||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 909 cccttgggcacgaagccgaggcgctggccgtcgccgtcgaacaccacgcggaagccctgc 850

                                                                       
Query: 351 tgctgtatgttgccgatgatggacacgccgccgtccgtgcccgcaaacgcgaagcanaac 410
           ||||| ||||| ||||||||||| ||||||||||| ||||| || ||||||||||| || 
Sbjct: 849 tgctggatgttcccgatgatggagacgccgccgtcggtgccggcgaacgcgaagcagaag 790

                                               
Query: 411 gtccctttcgagtccaccgggatcaggtagttctcc 446
           || ||  |||||||||||||||||||||||||||||
Sbjct: 789 gtgcccctcgagtccaccgggatcaggtagttctcc 754
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>dbj|AK120968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040I01, full
            insert sequence
          Length = 1769

 Score =  184 bits (93), Expect = 2e-43
 Identities = 140/156 (89%)
 Strand = Plus / Minus

                                                                        
Query: 291  cccttgggcgtgaaggcgacgcgctggccgtcgccgtcgaacaccacccggaagccctgc 350
            |||||||||  |||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1525 cccttgggcacgaagccgaggcgctggccgtcgccgtcgaacaccacgcggaagccctgc 1466

                                                                        
Query: 351  tgctgtatgttgccgatgatggacacgccgccgtccgtgcccgcaaacgcgaagcanaac 410
            ||||| ||||| ||||||||||| ||||||||||| ||||| || ||||||||||| || 
Sbjct: 1465 tgctggatgttcccgatgatggagacgccgccgtcggtgccggcgaacgcgaagcagaag 1406

                                                
Query: 411  gtccctttcgagtccaccgggatcaggtagttctcc 446
            || ||  |||||||||||||||||||||||||||||
Sbjct: 1405 gtgcccctcgagtccaccgggatcaggtagttctcc 1370
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>dbj|AK101038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033000J20, full
            insert sequence
          Length = 1763

 Score =  184 bits (93), Expect = 2e-43
 Identities = 140/156 (89%)
 Strand = Plus / Minus

                                                                        
Query: 291  cccttgggcgtgaaggcgacgcgctggccgtcgccgtcgaacaccacccggaagccctgc 350
            |||||||||  |||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1530 cccttgggcacgaagccgaggcgctggccgtcgccgtcgaacaccacgcggaagccctgc 1471

                                                                        
Query: 351  tgctgtatgttgccgatgatggacacgccgccgtccgtgcccgcaaacgcgaagcanaac 410
            ||||| ||||| ||||||||||| ||||||||||| ||||| || ||||||||||| || 
Sbjct: 1470 tgctggatgttcccgatgatggagacgccgccgtcggtgccggcgaacgcgaagcagaag 1411

                                                
Query: 411  gtccctttcgagtccaccgggatcaggtagttctcc 446
            || ||  |||||||||||||||||||||||||||||
Sbjct: 1410 gtgcccctcgagtccaccgggatcaggtagttctcc 1375
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>gb|AY106728.1| Zea mays PCO091418 mRNA sequence
          Length = 869

 Score =  170 bits (86), Expect = 2e-39
 Identities = 124/137 (90%)
 Strand = Plus / Minus

                                                                       
Query: 309 acgcgctggccgtcgccgtcgaacaccacccggaagccctgctgctgtatgttgccgatg 368
           ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 476 acgcgctggccgtcgccgtcgaacaccacgcggaacccctgctgctggatgttgccgatg 417

                                                                       
Query: 369 atggacacgccgccgtccgtgcccgcaaacgcgaagcanaacgtccctttcgagtccacc 428
           ||||||||||||||||| |||||||| ||||||||||| || || ||  | |||||||| 
Sbjct: 416 atggacacgccgccgtcggtgcccgcgaacgcgaagcagaaggtgcccctggagtccacg 357

                            
Query: 429 gggatcaggtagttctc 445
           ||||| |||||||||||
Sbjct: 356 gggatgaggtagttctc 340
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>gb|BT016792.1| Zea mays clone Contig625 mRNA sequence
          Length = 1862

 Score =  163 bits (82), Expect = 6e-37
 Identities = 123/137 (89%)
 Strand = Plus / Minus

                                                                        
Query: 309  acgcgctggccgtcgccgtcgaacaccacccggaagccctgctgctgtatgttgccgatg 368
            ||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 1443 acgcgctggccgtcggcgtcgaacaccacgcggaacccctgctgctggatgttgccgatg 1384

                                                                        
Query: 369  atggacacgccgccgtccgtgcccgcaaacgcgaagcanaacgtccctttcgagtccacc 428
            ||||||||||||||||| |||||||| ||||||||||| || || ||  | |||||||| 
Sbjct: 1383 atggacacgccgccgtcggtgcccgcgaacgcgaagcagaaggtgcccctggagtccacg 1324

                             
Query: 429  gggatcaggtagttctc 445
            ||||| |||||||||||
Sbjct: 1323 gggatgaggtagttctc 1307
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>ref|XM_482871.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1298

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 347  ctgctgctgtatgttgccgatgatggacacgccg 380
            ||||||||| | ||||||||||||||||||||||
Sbjct: 1052 ctgctgctggacgttgccgatgatggacacgccg 1019
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 347      ctgctgctgtatgttgccgatgatggacacgccg 380
                ||||||||| | ||||||||||||||||||||||
Sbjct: 23063113 ctgctgctggacgttgccgatgatggacacgccg 23063080
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>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0470B03
          Length = 163371

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                
Query: 347    ctgctgctgtatgttgccgatgatggacacgccg 380
              ||||||||| | ||||||||||||||||||||||
Sbjct: 122841 ctgctgctggacgttgccgatgatggacacgccg 122808
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>dbj|AK108789.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-B04, full
            insert sequence
          Length = 1298

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 347  ctgctgctgtatgttgccgatgatggacacgccg 380
            ||||||||| | ||||||||||||||||||||||
Sbjct: 1052 ctgctgctggacgttgccgatgatggacacgccg 1019
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>ref|NM_184292.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1833

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 422  gtccaccgggatcaggtagttct 444
            |||||||||||||||||||||||
Sbjct: 1408 gtccaccgggatcaggtagttct 1386



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 345  ccctgctgctgtatgttgccgatgatggacac 376
            ||||||||||| | ||| ||||||||||||||
Sbjct: 1485 ccctgctgctgcacgttcccgatgatggacac 1454
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>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0480E02
          Length = 141862

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 422   gtccaccgggatcaggtagttct 444
             |||||||||||||||||||||||
Sbjct: 42007 gtccaccgggatcaggtagttct 41985



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 345   ccctgctgctgtatgttgccgatgatggacac 376
             ||||||||||| | ||| ||||||||||||||
Sbjct: 42084 ccctgctgctgcacgttcccgatgatggacac 42053
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>dbj|AK068990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170M01, full
            insert sequence
          Length = 1833

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 422  gtccaccgggatcaggtagttct 444
            |||||||||||||||||||||||
Sbjct: 1408 gtccaccgggatcaggtagttct 1386



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 345  ccctgctgctgtatgttgccgatgatggacac 376
            ||||||||||| | ||| ||||||||||||||
Sbjct: 1485 ccctgctgctgcacgttcccgatgatggacac 1454
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>gb|AY099487.1| Acinetobacter lwoffii protocatechuate 3,4-dioxygenase beta subunit
           (pcaH) and protocatechuate 3,4-dioxygenase alpha subunit
           (pcaG) genes, partial cds
          Length = 1082

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 314 ctggccgtcgccgtcgaacacc 335
           ||||||||||||||||||||||
Sbjct: 861 ctggccgtcgccgtcgaacacc 840
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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 308    gacgcgctggccgtcgccgtcg 329
              ||||||||||||||||||||||
Sbjct: 119635 gacgcgctggccgtcgccgtcg 119656
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>ref|XM_465232.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1967

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 347  ctgctgctgtatgttgccgatgatggaca 375
            ||||||||| | |||||||||||||||||
Sbjct: 1606 ctgctgctggaagttgccgatgatggaca 1578
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>gb|AE014312.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 9
             of 11 of the complete sequence
          Length = 250029

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 179   gctctcactcatcacctttaa 199
             |||||||||||||||||||||
Sbjct: 66588 gctctcactcatcacctttaa 66608
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>emb|AL138954.16| Human DNA sequence from clone RP11-100K21 on chromosome 13q33.1-33.3,
             complete sequence
          Length = 144152

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 179   gctctcactcatcacctttaa 199
             |||||||||||||||||||||
Sbjct: 27570 gctctcactcatcacctttaa 27590
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 347      ctgctgctgtatgttgccgatgatggaca 375
                ||||||||| | |||||||||||||||||
Sbjct: 12465132 ctgctgctggaagttgccgatgatggaca 12465104
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>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0705A04
          Length = 182468

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 347    ctgctgctgtatgttgccgatgatggaca 375
              ||||||||| | |||||||||||||||||
Sbjct: 145269 ctgctgctggaagttgccgatgatggaca 145241
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>dbj|AK068924.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170E21, full
            insert sequence
          Length = 1967

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 347  ctgctgctgtatgttgccgatgatggaca 375
            ||||||||| | |||||||||||||||||
Sbjct: 1606 ctgctgctggaagttgccgatgatggaca 1578
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>ref|NM_188290.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1428

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 cgcgctggccgtcgccgtcg 329
           ||||||||||||||||||||
Sbjct: 119 cgcgctggccgtcgccgtcg 138
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     cgacgcgctggccgtcgccg 326
               ||||||||||||||||||||
Sbjct: 4270801 cgacgcgctggccgtcgccg 4270782
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>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence
          Length = 200908

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     ggcaacacttttacaggcag 110
              ||||||||||||||||||||
Sbjct: 126487 ggcaacacttttacaggcag 126468
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>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
          Length = 241087

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    cgcgctggccgtcgccgtcg 329
              ||||||||||||||||||||
Sbjct: 127174 cgcgctggccgtcgccgtcg 127193
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>gb|AY392416.1| Streptomyces clavuligerus plasmid pSCL2 clone contig6.A8, partial
            sequence
          Length = 9765

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 306  gcgacgcgctggccgtcgccgtcg 329
            ||||||||||||||||| ||||||
Sbjct: 8540 gcgacgcgctggccgtcaccgtcg 8563
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 316    ggccgtcgccgtcgaacacc 335
              ||||||||||||||||||||
Sbjct: 998688 ggccgtcgccgtcgaacacc 998669
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>emb|BX024333.1|CNS08QXT Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA37AD12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 970

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 cgcgctggccgtcgccgtcg 329
           ||||||||||||||||||||
Sbjct: 665 cgcgctggccgtcgccgtcg 684
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>emb|BX021372.1|CNS08ONK Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA31CG06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1011

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 cgcgctggccgtcgccgtcg 329
           ||||||||||||||||||||
Sbjct: 669 cgcgctggccgtcgccgtcg 688
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>emb|BX021328.1|CNS08OMC Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA31CE05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 972

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 cgcgctggccgtcgccgtcg 329
           ||||||||||||||||||||
Sbjct: 674 cgcgctggccgtcgccgtcg 693
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>emb|BX015809.1|CNS08KD1 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA23CH11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1018

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 cgcgctggccgtcgccgtcg 329
           ||||||||||||||||||||
Sbjct: 653 cgcgctggccgtcgccgtcg 672
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>emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome; segment 13/13
          Length = 244800

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    cgacgcgctggccgtcgccg 326
              ||||||||||||||||||||
Sbjct: 111746 cgacgcgctggccgtcgccg 111727
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>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    tgccgatgatggacacgccg 380
              ||||||||||||||||||||
Sbjct: 142566 tgccgatgatggacacgccg 142547
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>emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 14/14
          Length = 278492

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    cgacgcgctggccgtcgccg 326
              ||||||||||||||||||||
Sbjct: 147751 cgacgcgctggccgtcgccg 147732
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>gb|AE006021.1| Caulobacter crescentus CB15 section 347 of 359 of the complete genome
          Length = 12511

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 317  gccgtcgccgtcgaacaccacccg 340
            ||||||| ||||||||||||||||
Sbjct: 8157 gccgtcggcgtcgaacaccacccg 8180
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 317      gccgtcgccgtcgaacaccacccg 340
                |||||||||||||| |||||||||
Sbjct: 18415803 gccgtcgccgtcgagcaccacccg 18415780
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>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1015E06
          Length = 164583

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    cgcgctggccgtcgccgtcg 329
              ||||||||||||||||||||
Sbjct: 103590 cgcgctggccgtcgccgtcg 103609
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 301     tgaaggcgacgcgctggccgtcgc 324
               ||||||||||||| ||||||||||
Sbjct: 3891254 tgaaggcgacgcggtggccgtcgc 3891231
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 314     ctggccgtcgccgtcgaacaccac 337
               ||||||||||||| ||||||||||
Sbjct: 8749268 ctggccgtcgccgccgaacaccac 8749291
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 327     tcgaacaccacccggaagccctgc 350
               |||||||||| |||||||||||||
Sbjct: 4752888 tcgaacaccagccggaagccctgc 4752865
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>gb|AF117752.1|AF117752 Anopheles gambiae serine protease 2A (Sp2A) mRNA, partial cds
          Length = 464

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 cgcgctggccgtcgccgtcg 329
           ||||||||||||||||||||
Sbjct: 289 cgcgctggccgtcgccgtcg 270
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>ref|XM_310504.2| Anopheles gambiae str. PEST ENSANGP00000024359
           (ENSANGG00000021113), partial mRNA
          Length = 465

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 cgcgctggccgtcgccgtcg 329
           ||||||||||||||||||||
Sbjct: 289 cgcgctggccgtcgccgtcg 270
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>dbj|AK103713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033137H02, full
           insert sequence
          Length = 1289

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 317 gccgtcgccgtcgaacaccacccg 340
           |||||||||||||| |||||||||
Sbjct: 54  gccgtcgccgtcgagcaccacccg 77
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>emb|Z22737.1|AELACDEH A.eutrophus genes for lactate dehydrogenase, putative membrane-bound
            protein with four times repitition of Pro-Ser-Ala at the
            N-terminus (function unknown) and transglycosidase
            (partial)
          Length = 4245

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 317  gccgtcgccgtcgaacacca 336
            ||||||||||||||||||||
Sbjct: 2765 gccgtcgccgtcgaacacca 2746
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>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
              complete sequence
          Length = 133413

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 317    gccgtcgccgtcgaacaccacccg 340
              |||||||||||||| |||||||||
Sbjct: 117726 gccgtcgccgtcgagcaccacccg 117703
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>gb|AD000017.1|MSGY409 Mycobacterium tuberculosis sequence from clone y409
          Length = 41321

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   cgacgcgctggccgtcgccg 326
             ||||||||||||||||||||
Sbjct: 39718 cgacgcgctggccgtcgccg 39737


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,989,365
Number of Sequences: 3902068
Number of extensions: 3989365
Number of successful extensions: 69476
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68831
Number of HSP's gapped (non-prelim): 645
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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