ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast75h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507431.1| PREDICTED Oryza sativa (japonica cultivar-group... 92 2e-15
2ref|XM_463878.1| Oryza sativa (japonica cultivar-group), mRNA 92 2e-15
3ref|XM_506685.2| PREDICTED Oryza sativa (japonica cultivar-group... 92 2e-15
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
5dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
6dbj|AK104188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
7dbj|AK103434.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
8dbj|AK060881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
9gb|BT017900.1| Zea mays clone EL01N0516C03.c mRNA sequence 72 2e-09
10gb|AY103972.1| Zea mays PCO108472 mRNA sequence 72 2e-09
11dbj|AK114164.1| Ciona intestinalis cDNA, clone:cicl042g08, full ... 44 0.35
12gb|AC154480.2| Mus musculus BAC clone RP24-135M1 from 13, comple... 42 1.4
13gb|AF056631.1|AF056631 Arabidopsis thaliana Ty3/gypsy retrotrans... 42 1.4
14gb|AF056632.1|AF056632 Arabidopsis thaliana Ty3/gypsy retrotrans... 42 1.4
15gb|AC006085.1| Arabidopsis thaliana chromosome I BAC F11M15 geno... 42 1.4
16emb|CR383678.10| Zebrafish DNA sequence from clone DKEY-205B5 in... 40 5.5
17emb|BX571945.15| Zebrafish DNA sequence from clone DKEY-267I17 i... 40 5.5
18gb|AC019197.7| Homo sapiens BAC clone RP11-361O8 from 2, complet... 40 5.5
19dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 5.5
20gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Canc... 40 5.5 
>ref|XM_507431.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1442_E05.19
           mRNA
          Length = 1093

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                       
Query: 272 gcatttggcggccaaagctttggatcttgagttgtgtccatggcggttgggggcaaccag 331
           |||||||| |||||||||||||||||||||||||||||||  || ||||| |||||||| 
Sbjct: 804 gcatttggtggccaaagctttggatcttgagttgtgtccacagcagttggaggcaaccac 745

                         
Query: 332 tgccacatcgccat 345
           |||||||| |||||
Sbjct: 744 tgccacattgccat 731



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 74  gcaagagggtcaagatccagattaattacagg 105
           |||||||||| | |||||||||||||||||||
Sbjct: 997 gcaagagggttacgatccagattaattacagg 966
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>ref|XM_463878.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1093

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                       
Query: 272 gcatttggcggccaaagctttggatcttgagttgtgtccatggcggttgggggcaaccag 331
           |||||||| |||||||||||||||||||||||||||||||  || ||||| |||||||| 
Sbjct: 804 gcatttggtggccaaagctttggatcttgagttgtgtccacagcagttggaggcaaccac 745

                         
Query: 332 tgccacatcgccat 345
           |||||||| |||||
Sbjct: 744 tgccacattgccat 731



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 74  gcaagagggtcaagatccagattaattacagg 105
           |||||||||| | |||||||||||||||||||
Sbjct: 997 gcaagagggttacgatccagattaattacagg 966
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>ref|XM_506685.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1442_E05.19
           mRNA
          Length = 1325

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                       
Query: 272 gcatttggcggccaaagctttggatcttgagttgtgtccatggcggttgggggcaaccag 331
           |||||||| |||||||||||||||||||||||||||||||  || ||||| |||||||| 
Sbjct: 968 gcatttggtggccaaagctttggatcttgagttgtgtccacagcagttggaggcaaccac 909

                         
Query: 332 tgccacatcgccat 345
           |||||||| |||||
Sbjct: 908 tgccacattgccat 895



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 74   gcaagagggtcaagatccagattaattacagg 105
            |||||||||| | |||||||||||||||||||
Sbjct: 1161 gcaagagggttacgatccagattaattacagg 1130
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                          
Query: 272    gcatttggcggccaaagctttggatcttgagttgtgtccatggcggttgggggcaaccag 331
              |||||||| |||||||||||||||||||||||||||||||  || ||||| |||||||| 
Sbjct: 876321 gcatttggtggccaaagctttggatcttgagttgtgtccacagcagttggaggcaaccac 876380

                            
Query: 332    tgccacatcgccat 345
              |||||||| |||||
Sbjct: 876381 tgccacattgccat 876394



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 74     gcaagagggtcaagatccagattaattacagg 105
              |||||||||| | |||||||||||||||||||
Sbjct: 876128 gcaagagggttacgatccagattaattacagg 876159
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>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1442_E05
          Length = 162407

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                         
Query: 272   gcatttggcggccaaagctttggatcttgagttgtgtccatggcggttgggggcaaccag 331
             |||||||| |||||||||||||||||||||||||||||||  || ||||| |||||||| 
Sbjct: 85529 gcatttggtggccaaagctttggatcttgagttgtgtccacagcagttggaggcaaccac 85588

                           
Query: 332   tgccacatcgccat 345
             |||||||| |||||
Sbjct: 85589 tgccacattgccat 85602



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 74    gcaagagggtcaagatccagattaattacagg 105
             |||||||||| | |||||||||||||||||||
Sbjct: 85336 gcaagagggttacgatccagattaattacagg 85367
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>dbj|AK104188.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B03, full
           insert sequence
          Length = 1093

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                       
Query: 272 gcatttggcggccaaagctttggatcttgagttgtgtccatggcggttgggggcaaccag 331
           |||||||| |||||||||||||||||||||||||||||||  || ||||| |||||||| 
Sbjct: 804 gcatttggtggccaaagctttggatcttgagttgtgtccacagcagttggaggcaaccac 745

                         
Query: 332 tgccacatcgccat 345
           |||||||| |||||
Sbjct: 744 tgccacattgccat 731



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 74  gcaagagggtcaagatccagattaattacagg 105
           |||||||||| | |||||||||||||||||||
Sbjct: 997 gcaagagggttacgatccagattaattacagg 966
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>dbj|AK103434.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129B02, full
           insert sequence
          Length = 1325

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                       
Query: 272 gcatttggcggccaaagctttggatcttgagttgtgtccatggcggttgggggcaaccag 331
           |||||||| |||||||||||||||||||||||||||||||  || ||||| |||||||| 
Sbjct: 968 gcatttggtggccaaagctttggatcttgagttgtgtccacagcagttggaggcaaccac 909

                         
Query: 332 tgccacatcgccat 345
           |||||||| |||||
Sbjct: 908 tgccacattgccat 895



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 74   gcaagagggtcaagatccagattaattacagg 105
            |||||||||| | |||||||||||||||||||
Sbjct: 1161 gcaagagggttacgatccagattaattacagg 1130
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>dbj|AK060881.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A10, full
           insert sequence
          Length = 1093

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                       
Query: 272 gcatttggcggccaaagctttggatcttgagttgtgtccatggcggttgggggcaaccag 331
           |||||||| |||||||||||||||||||||||||||||||  || ||||| |||||||| 
Sbjct: 804 gcatttggtggccaaagctttggatcttgagttgtgtccacagcagttggaggcaaccac 745

                         
Query: 332 tgccacatcgccat 345
           |||||||| |||||
Sbjct: 744 tgccacattgccat 731



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 74  gcaagagggtcaagatccagattaattacagg 105
           |||||||||| | |||||||||||||||||||
Sbjct: 997 gcaagagggttacgatccagattaattacagg 966
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>gb|BT017900.1| Zea mays clone EL01N0516C03.c mRNA sequence
          Length = 1186

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                       
Query: 267 cctaggcatttggcggccaaagctttggatcttgagttgtgtccatggcggttgggggca 326
           |||| ||||| |||||||| |||||||| |||||||||||||||| |  ||| || ||||
Sbjct: 783 cctaagcattaggcggccagagctttgggtcttgagttgtgtccacgatggtcggaggca 724

                                       
Query: 327 accagtgccacatcgccattccagggaa 354
            ||| |||||||| ||||| ||||||||
Sbjct: 723 gccactgccacattgccatcccagggaa 696
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>gb|AY103972.1| Zea mays PCO108472 mRNA sequence
          Length = 1124

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                       
Query: 267 cctaggcatttggcggccaaagctttggatcttgagttgtgtccatggcggttgggggca 326
           |||| ||||| |||||||| |||||||| |||||||||||||||| |  ||| || ||||
Sbjct: 833 cctaagcattaggcggccagagctttgggtcttgagttgtgtccacgatggtcggaggca 774

                                       
Query: 327 accagtgccacatcgccattccagggaa 354
            ||| |||||||| ||||| ||||||||
Sbjct: 773 gccactgccacattgccatcccagggaa 746
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>dbj|AK114164.1| Ciona intestinalis cDNA, clone:cicl042g08, full insert sequence
          Length = 1154

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 286 aagctttggatcttgagttgtg 307
           ||||||||||||||||||||||
Sbjct: 624 aagctttggatcttgagttgtg 645
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>gb|AC154480.2| Mus musculus BAC clone RP24-135M1 from 13, complete sequence
          Length = 171846

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 122    gacaagtgaccccaaaacaac 142
              |||||||||||||||||||||
Sbjct: 132293 gacaagtgaccccaaaacaac 132273
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>gb|AF056631.1|AF056631 Arabidopsis thaliana Ty3/gypsy retrotransposon Tat1-1 gag pseudogene,
            complete sequence
          Length = 3979

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 192  gggacctgacaaactttctga 212
            |||||||||||||||||||||
Sbjct: 1330 gggacctgacaaactttctga 1310
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>gb|AF056632.1|AF056632 Arabidopsis thaliana Ty3/gypsy retrotransposon Tat1-2 gag pseudogene,
            complete sequence
          Length = 4038

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 192  gggacctgacaaactttctga 212
            |||||||||||||||||||||
Sbjct: 1341 gggacctgacaaactttctga 1321
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>gb|AC006085.1| Arabidopsis thaliana chromosome I BAC F11M15 genomic sequence, complete
             sequence
          Length = 105807

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   gggacctgacaaactttctga 212
             |||||||||||||||||||||
Sbjct: 22782 gggacctgacaaactttctga 22802
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>emb|CR383678.10| Zebrafish DNA sequence from clone DKEY-205B5 in linkage group 5, complete
              sequence
          Length = 198392

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     aatatattttccaagcaaga 79
              ||||||||||||||||||||
Sbjct: 111311 aatatattttccaagcaaga 111292
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>emb|BX571945.15| Zebrafish DNA sequence from clone DKEY-267I17 in linkage group 5,
              complete sequence
          Length = 192769

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     aatatattttccaagcaaga 79
              ||||||||||||||||||||
Sbjct: 188856 aatatattttccaagcaaga 188837
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>gb|AC019197.7| Homo sapiens BAC clone RP11-361O8 from 2, complete sequence
          Length = 178255

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     tggtagcactgaatatattt 68
              ||||||||||||||||||||
Sbjct: 141283 tggtagcactgaatatattt 141264
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 124     caagtgaccccaaaacaaca 143
               ||||||||||||||||||||
Sbjct: 2302270 caagtgaccccaaaacaaca 2302289
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>gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187830

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    gaatatattttccaagcaag 78
             ||||||||||||||||||||
Sbjct: 97904 gaatatattttccaagcaag 97885


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,425,192
Number of Sequences: 3902068
Number of extensions: 3425192
Number of successful extensions: 60542
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60475
Number of HSP's gapped (non-prelim): 67
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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