>gb|BT009337.1| Triticum aestivum clone wlm4.pk0012.g12:fis, full insert mRNA
           sequence
          Length = 1412

 Score =  293 bits (148), Expect = 1e-76
 Identities = 238/269 (88%), Gaps = 1/269 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   acaagtaacagattgaactttatttgcaagaatgttgggcatatacaaaggtatgaaaag 61
           |||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||| |||
Sbjct: 447 acaagtaaaagattgagctttatttgcaagaatgttggacatatacaaaagtatgagaag 388

                                                                       
Query: 62  gattggataaaacatcatcaaacatttgaacacccgggaccgttcactaatggtctaaat 121
           ||||||||| ||||||||||| |||| ||||| | ||||| ||| |||||||||||||||
Sbjct: 387 gattggatagaacatcatcaagcatt-gaacatcagggacagttgactaatggtctaaat 329

                                                                       
Query: 122 cctgctcacctcctccagttaaaatatgcactgataaaatggcttccnnnnnnntaattt 181
           ||||||||||||||| ||||| || ||||||||| ||  ||||||||       |||| |
Sbjct: 328 cctgctcacctcctcaagttagaacatgcactgacaagctggcttccagaagaataatct 269

                                                                       
Query: 182 cagtcctttttgaacagctcacggccaattatcattcttctgatctcactagtaccagcc 241
           ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 268 cagtcctctttaaacagctcacggccaattatcattcttctgatctcactagtacccgcc 209

                                        
Query: 242 ccaatctcaaacagttttgcatctctcag 270
           |||||||| |||||||||||||| |||||
Sbjct: 208 ccaatctcgaacagttttgcatccctcag 180

>gb|BT016848.1| Zea mays clone Contig681 mRNA sequence
          Length = 855

 Score =  135 bits (68), Expect = 8e-29
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                       
Query: 179 tttcagtcctttttgaacagctcacggccaattatcattcttctgatctcactagtacca 238
           |||||||||| |||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct: 163 tttcagtcctctttgaagagctcacggccaattatcattcttcttacctcactagtacca 222

                                           
Query: 239 gccccaatctcaaacagttttgcatctctcag 270
           || ||||||||||||| |||||||||||||||
Sbjct: 223 gcaccaatctcaaacaattttgcatctctcag 254

>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0079L11, complete sequence
          Length = 124104

 Score =  127 bits (64), Expect = 2e-26
 Identities = 85/92 (92%)
 Strand = Plus / Plus

                                                                         
Query: 179   tttcagtcctttttgaacagctcacggccaattatcattcttctgatctcactagtacca 238
             ||||| |||| |||||| ||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 71480 tttcactcctctttgaagagctcgcggccaattatcattcttcttatctcactagtaccg 71539

                                             
Query: 239   gccccaatctcaaacagttttgcatctctcag 270
             || |||||||||||||||||||||||||||||
Sbjct: 71540 gctccaatctcaaacagttttgcatctctcag 71571

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  127 bits (64), Expect = 2e-26
 Identities = 85/92 (92%)
 Strand = Plus / Plus

                                                                           
Query: 179     tttcagtcctttttgaacagctcacggccaattatcattcttctgatctcactagtacca 238
               ||||| |||| |||||| ||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 1409818 tttcactcctctttgaagagctcgcggccaattatcattcttcttatctcactagtaccg 1409877

                                               
Query: 239     gccccaatctcaaacagttttgcatctctcag 270
               || |||||||||||||||||||||||||||||
Sbjct: 1409878 gctccaatctcaaacagttttgcatctctcag 1409909

>dbj|AK071923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072N03, full
            insert sequence
          Length = 1663

 Score =  127 bits (64), Expect = 2e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                        
Query: 179  tttcagtcctttttgaacagctcacggccaattatcattcttctgatctcactagtacca 238
            ||||| |||| |||||| ||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 1495 tttcactcctctttgaagagctcgcggccaattatcattcttcttatctcactagtaccg 1436

                                            
Query: 239  gccccaatctcaaacagttttgcatctctcag 270
            || |||||||||||||||||||||||||||||
Sbjct: 1435 gctccaatctcaaacagttttgcatctctcag 1404

>dbj|AK066314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064C04, full
            insert sequence
          Length = 1500

 Score =  127 bits (64), Expect = 2e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                        
Query: 179  tttcagtcctttttgaacagctcacggccaattatcattcttctgatctcactagtacca 238
            ||||| |||| |||||| ||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 1332 tttcactcctctttgaagagctcgcggccaattatcattcttcttatctcactagtaccg 1273

                                            
Query: 239  gccccaatctcaaacagttttgcatctctcag 270
            || |||||||||||||||||||||||||||||
Sbjct: 1272 gctccaatctcaaacagttttgcatctctcag 1241

>gb|AY107381.1| Zea mays PCO061330 mRNA sequence
          Length = 1531

 Score =  127 bits (64), Expect = 2e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                        
Query: 179  tttcagtcctttttgaacagctcacggccaattatcattcttctgatctcactagtacca 238
            |||||||||| |||||| |||||||||||||||||||||||||| | |||||||||||| 
Sbjct: 1320 tttcagtcctctttgaagagctcacggccaattatcattcttcttacctcactagtaccg 1261

                                            
Query: 239  gccccaatctcaaacagttttgcatctctcag 270
            || ||||||||||||| |||||||||||||||
Sbjct: 1260 gcaccaatctcaaacaattttgcatctctcag 1229

>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12,
            complete sequence
          Length = 144455

 Score =  127 bits (64), Expect = 2e-26
 Identities = 85/92 (92%)
 Strand = Plus / Plus

                                                                        
Query: 179  tttcagtcctttttgaacagctcacggccaattatcattcttctgatctcactagtacca 238
            ||||| |||| |||||| ||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 3898 tttcactcctctttgaagagctcgcggccaattatcattcttcttatctcactagtaccg 3957

                                            
Query: 239  gccccaatctcaaacagttttgcatctctcag 270
            || |||||||||||||||||||||||||||||
Sbjct: 3958 gctccaatctcaaacagttttgcatctctcag 3989

>ref|XM_475553.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1230

 Score =  123 bits (62), Expect = 3e-25
 Identities = 80/86 (93%)
 Strand = Plus / Minus

                                                                        
Query: 185  tcctttttgaacagctcacggccaattatcattcttctgatctcactagtaccagcccca 244
            |||| |||||| ||||| |||||||||||||||||||| |||||||||||||| || |||
Sbjct: 1226 tcctctttgaagagctcgcggccaattatcattcttcttatctcactagtaccggctcca 1167

                                      
Query: 245  atctcaaacagttttgcatctctcag 270
            ||||||||||||||||||||||||||
Sbjct: 1166 atctcaaacagttttgcatctctcag 1141

>gb|BT017728.1| Zea mays clone EL01N0447H09.c mRNA sequence
          Length = 942

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                       
Query: 179 tttcagtcctttttgaacagctcacggccaattatcattct-tctgatctcactagtacc 237
           ||||||||||||||||| ||||||||||||||||||||| | | | ||||| || | |||
Sbjct: 741 tttcagtcctttttgaagagctcacggccaattatcattgtgtgttatctcgcttggacc 682

                                     
Query: 238 agccccaatctcaaacagttttgcat 263
           ||||||||||||||||| ||||||||
Sbjct: 681 agccccaatctcaaacaattttgcat 656

>emb|AJ278988.1|STU278988 Solanum tuberosum partial mRNA for isovaleryl-CoA dehydrogenase (ivd2
            gene)
          Length = 1415

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                        
Query: 200  tcacggccaattatcattcttctgatctcactagtaccagccccaatctcaaacagtttt 259
            |||||||| ||||||||||||||||||||||| || || || ||||||||| | ||||| 
Sbjct: 1187 tcacggcctattatcattcttctgatctcacttgtgcctgcaccaatctcatatagtttg 1128

                   
Query: 260  gcatctc 266
            |||||||
Sbjct: 1127 gcatctc 1121

>gb|AC152176.5| Medicago truncatula clone mth2-65c4, complete sequence
          Length = 161536

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 206   ccaattatcattcttctgatctcactagtaccagccccaatctcaaacagttttgcatct 265
             ||||| |||||||||||||||||||| || || ||||| |||||  | ||||| ||||||
Sbjct: 11870 ccaataatcattcttctgatctcacttgttccggccccgatctcgtagagtttcgcatct 11929

               
Query: 266   ct 267
             ||
Sbjct: 11930 ct 11931

>emb|AJ010946.1|PSA010946 Pisum sativum abp44/ivdh gene for Isovaleryl-CoA dehydrogenase/auxin
            binding protein
          Length = 3572

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 191  ttgaacagctcacggccaattatcattcttctgatctcactagtaccagccccaatctca 250
            ||||| ||||| || || || ||||||||||||||||||||||| || || || ||||| 
Sbjct: 3334 ttgaagagctcgcgtcctataatcattcttctgatctcactagttccggctccgatctcg 3275

                             
Query: 251  aacagttttgcatctct 267
             | ||||| ||||||||
Sbjct: 3274 taaagtttagcatctct 3258

>emb|AJ010945.1|PSA010945 Pisum sativum mRNA for Isovaleryl-CoA dehydrogenase/auxin binding
            protein (abp44/ivdh gene)
          Length = 1559

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 191  ttgaacagctcacggccaattatcattcttctgatctcactagtaccagccccaatctca 250
            ||||| ||||| || || || ||||||||||||||||||||||| || || || ||||| 
Sbjct: 1321 ttgaagagctcgcgtcctataatcattcttctgatctcactagttccggctccgatctcg 1262

                             
Query: 251  aacagttttgcatctct 267
             | ||||| ||||||||
Sbjct: 1261 taaagtttagcatctct 1245

>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 12      gattgaactttatttgcaaga 32
               |||||||||||||||||||||
Sbjct: 1037973 gattgaactttatttgcaaga 1037993

>gb|BC106210.1| Xenopus laevis cDNA clone IMAGE:7980776, partial cds
          Length = 1734

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 226  ctcactagtaccagccccaatctcaaacagttttgcatctc 266
            |||||| || || |||||||||||| ||||||| |||||||
Sbjct: 1207 ctcactggtgccggccccaatctcatacagtttggcatctc 1167

>gb|AC161572.4| Mus musculus chromosome 15, clone RP23-358J10, complete sequence
          Length = 218429

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 143    aaatatgcactgataaaatggcttc 167
              ||||||| |||||||||||||||||
Sbjct: 194183 aaatatgtactgataaaatggcttc 194207

>ref|XM_852863.1| PREDICTED: Canis familiaris similar to Isovaleryl-CoA dehydrogenase,
            mitochondrial precursor (IVD), transcript variant 2
            (LOC478259), mRNA
          Length = 1818

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 226  ctcactagtaccagccccaatctcaaacagttttgcatctc 266
            |||||| || ||||||||||||||| |||| || |||||||
Sbjct: 1272 ctcactggtcccagccccaatctcatacagcttggcatctc 1232

>ref|XM_535433.2| PREDICTED: Canis familiaris similar to Isovaleryl-CoA dehydrogenase,
            mitochondrial precursor (IVD), transcript variant 1
            (LOC478259), mRNA
          Length = 1800

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 226  ctcactagtaccagccccaatctcaaacagttttgcatctc 266
            |||||| || ||||||||||||||| |||| || |||||||
Sbjct: 1254 ctcactggtcccagccccaatctcatacagcttggcatctc 1214

>emb|CR659357.2|CNS0F7QB Tetraodon nigroviridis full-length cDNA
          Length = 1085

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 121 tcctgctcacctcctccagtt 141
           |||||||||||||||||||||
Sbjct: 729 tcctgctcacctcctccagtt 709

>gb|AC115286.3| Homo sapiens chromosome 1 clone RP4-657M3, complete sequence
          Length = 125032

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 27     gcaagaatgttgggcatatacaaag 51
              ||||||||| |||||||||||||||
Sbjct: 115380 gcaagaatggtgggcatatacaaag 115404

>gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, complete sequence
          Length = 128950

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 143   aaatatgcactgataaaatggcttc 167
             ||||||| |||||||||||||||||
Sbjct: 28603 aaatatgtactgataaaatggcttc 28627

>gb|BC094479.1| Xenopus laevis cDNA clone IMAGE:7020557, partial cds
          Length = 1729

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 226  ctcactagtaccagccccaatctcaaacagttttgcatctc 266
            |||||| || || |||||||||||| ||||||| |||||||
Sbjct: 1207 ctcactggtgccggccccaatctcatacagtttggcatctc 1167

>gb|AC107662.9| Mus musculus chromosome 9, clone RP23-99B22, complete sequence
          Length = 233476

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     gtaacagattgaactttatt 25
             ||||||||||||||||||||
Sbjct: 33531 gtaacagattgaactttatt 33512

>emb|AL354997.17| Human DNA sequence from clone RP11-309H8 on chromosome 13 Contains two
              novel genes and a novel RING finger protein pseudogene,
              complete sequence
          Length = 156077

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    aatctcaaacagttttgcat 263
              ||||||||||||||||||||
Sbjct: 122368 aatctcaaacagttttgcat 122387

>emb|AL133515.9| Human DNA sequence from clone GS1-153O3 on chromosome 1 Contains part
             of the gene for hemicentin, complete sequence
          Length = 47170

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   acctcctccagttaaaatat 148
             ||||||||||||||||||||
Sbjct: 13354 acctcctccagttaaaatat 13373

>gb|AC093839.3| Homo sapiens BAC clone RP11-433K16 from 4, complete sequence
          Length = 162522

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   acctcctccagttaaaatat 148
             ||||||||||||||||||||
Sbjct: 77970 acctcctccagttaaaatat 77951

>gb|AF269454.1|AF269454 Staphylococcus epidermidis strain SR1 clone step.1004b05 genomic
            sequence
          Length = 3994

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 65   tggataaaacatcatcaaacattt 88
            |||||||||| |||||||||||||
Sbjct: 1594 tggataaaacctcatcaaacattt 1617

>gb|AC160560.2| Mus musculus BAC clone RP23-357O18 from chromosome 9, complete sequence
          Length = 213978

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      gtaacagattgaactttatt 25
              ||||||||||||||||||||
Sbjct: 203817 gtaacagattgaactttatt 203798

>gb|AC114547.12| Mus musculus chromosome 8, clone RP24-68M15, complete sequence
          Length = 182611

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   aattatcattcttctgatct 227
             ||||||||||||||||||||
Sbjct: 58706 aattatcattcttctgatct 58725

>gb|AF270254.1|AF270254 Staphylococcus epidermidis strain SR1 clone step.1056h07 genomic
            sequence
          Length = 3204

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 65   tggataaaacatcatcaaacattt 88
            |||||||||| |||||||||||||
Sbjct: 2196 tggataaaacctcatcaaacattt 2219

>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 65      tggataaaacatcatcaaacattt 88
               |||||||||| |||||||||||||
Sbjct: 1207981 tggataaaacctcatcaaacattt 1208004

>emb|CR352252.12| Zebrafish DNA sequence from clone CH211-181P13 in linkage group 22,
             complete sequence
          Length = 115241

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   tcattcttctgatctcacta 232
             ||||||||||||||||||||
Sbjct: 36346 tcattcttctgatctcacta 36365

>gb|AC156553.17| Mus musculus chromosome 8, clone RP23-106I21, complete sequence
          Length = 211915

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      acaagtaacagattgaactt 21
              ||||||||||||||||||||
Sbjct: 179770 acaagtaacagattgaactt 179751

>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 65      tggataaaacatcatcaaacattt 88
               |||||||||| |||||||||||||
Sbjct: 1319933 tggataaaacctcatcaaacattt 1319956

>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome
          Length = 1181404

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    gaaaaggattggataaaacatcat 79
             |||||| |||||||||||||||||
Sbjct: 64747 gaaaagaattggataaaacatcat 64724

>gb|AC171733.1| Lycopersicon esculentum chromosome 11 clone C11HBa0034I10, complete
             sequence
          Length = 95704

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ttgaactttatttgcaagaa 33
             ||||||||||||||||||||
Sbjct: 77908 ttgaactttatttgcaagaa 77927


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,686,338
Number of Sequences: 3902068
Number of extensions: 2686338
Number of successful extensions: 51604
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51514
Number of HSP's gapped (non-prelim): 87
length of query: 272
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 250
effective length of database: 17,147,199,772
effective search space: 4286799943000
effective search space used: 4286799943000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)