ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast75f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|CP000316.1| Polaromonas sp. JS666, complete genome 44 0.12
2gb|AC146560.21| Medicago truncatula clone mth2-12g6, complete se... 42 0.47
3gb|AC166972.8| Mus musculus chromosome 3, clone RP24-330F18, com... 40 1.9
4ref|NM_197902.1| Oryza sativa (japonica cultivar-group) hypothet... 40 1.9
5gb|AC161226.7| Mus musculus chromosome 3, clone RP23-298B8, comp... 40 1.9
6gb|DQ058819.1| Archaeon HR3812-Enrichment-019 clone HR-CF-Enrich... 40 1.9
7gb|AC154564.3| Mus musculus BAC clone RP23-402A16 from chromosom... 40 1.9
8dbj|AK138356.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 40 1.9
9gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 gen... 40 1.9
10dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
12dbj|AP005257.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
13dbj|AK119822.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.9
14dbj|AK107128.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.9
15dbj|AK071802.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.9
16gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 1.9
17gb|BC013800.1| Mus musculus RIKEN cDNA 2810432L12 gene, mRNA (cD... 38 7.4
18ref|NM_129463.2| Arabidopsis thaliana unknown protein AT2G39060 ... 38 7.4
19ref|NM_129886.2| Arabidopsis thaliana nucleotide-sugar transport... 38 7.4
20gb|CP000110.1| Synechococcus sp. CC9605, complete genome 38 7.4
21ref|XM_479406.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.4
22ref|NM_025944.2| Mus musculus RIKEN cDNA 2810432L12 gene (281043... 38 7.4
23gb|BC106539.1| Xenopus laevis cDNA clone MGC:131299 IMAGE:776459... 38 7.4
24ref|XM_417519.1| PREDICTED: Gallus gallus similar to Beta-1,4-ga... 38 7.4
25gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 geno... 38 7.4
26ref|XM_588396.2| PREDICTED: Bos taurus similar to Protein FAM40A... 38 7.4
27gb|AC110716.6| Homo sapiens 3 BAC RP11-442N1 (Roswell Park Cance... 38 7.4
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.4
29gb|AC132346.3| Mus musculus BAC clone RP24-179K8 from chromosome... 38 7.4
30gb|AC127419.3| Mus musculus BAC clone RP24-242N1 from chromosome... 38 7.4
31gb|AC125091.3| Mus musculus BAC clone RP24-165P5 from chromosome... 38 7.4
32emb|AL603965.10| Human DNA sequence from clone RP11-145E20 on ch... 38 7.4
33emb|AL603966.9| Human DNA sequence from clone RP11-164N7 on chro... 38 7.4
34emb|AL591684.7| Human DNA sequence from clone RP11-301J7 on chro... 38 7.4
35emb|AL391137.11| Human DNA sequence from clone RP11-144G6 on chr... 38 7.4
36gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 38 7.4
37gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 38 7.4
38emb|AL136982.11| Human DNA sequence from clone RP11-96C23 on chr... 38 7.4
39dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 38 7.4
40gb|AC005770.3| Arabidopsis thaliana chromosome 2 clone T7F6 map ... 38 7.4
41gb|AC004450.3| Arabidopsis thaliana chromosome 2 clone F14B2 map... 38 7.4
42dbj|AK165526.1| Mus musculus cDNA, RIKEN full-length enriched li... 38 7.4
43dbj|AK221504.1| Arabidopsis thaliana mRNA for hypothetical prote... 38 7.4
44dbj|AK042679.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 38 7.4
45dbj|AK039788.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 38 7.4
46dbj|AK013226.1| Mus musculus 10, 11 days embryo whole body cDNA,... 38 7.4
47dbj|AK045523.1| Mus musculus adult male corpora quadrigemina cDN... 38 7.4
48gb|AC007308.13| Homo sapiens chromosome 22 clone pac408 map 22q1... 38 7.4
49gb|AC002470.17| Homo sapiens Chromosome 22q11.2 BAC Clone b135h6... 38 7.4
50dbj|AK038514.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 38 7.4
51dbj|AK075994.1| Mus musculus 10 days embryo whole body cDNA, RIK... 38 7.4
52dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
53dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
54emb|BX820117.1|CNS0AA1I Arabidopsis thaliana Full-length cDNA Co... 38 7.4
55emb|BX820748.1|CNS0A9NX Arabidopsis thaliana Full-length cDNA Co... 38 7.4
56emb|BX820622.1|CNS0A9HH Arabidopsis thaliana Full-length cDNA Co... 38 7.4
57emb|BX819171.1|CNS0A9RJ Arabidopsis thaliana Full-length cDNA Co... 38 7.4
58emb|BX820078.1|CNS0A9GA Arabidopsis thaliana Full-length cDNA Co... 38 7.4
59emb|BX819705.1|CNS0A9CQ Arabidopsis thaliana Full-length cDNA Co... 38 7.4
60dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 7.4
61gb|AY086047.1| Arabidopsis thaliana clone 20810 mRNA, complete s... 38 7.4
62dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
63dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
64dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
65dbj|AK103870.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.4
66gb|U29580.1|ECU29580 Escherichia coli K-12 genome; approximately... 38 7.4
67emb|AL772310.27| Mouse DNA sequence from clone RP23-34B24 on chr... 38 7.4
68emb|AL732521.18| Mouse DNA sequence from clone RP23-134A17 on ch... 38 7.4
69gb|BC089972.1| Rattus norvegicus similar to RIKEN cDNA 2810432L1... 38 7.4
70ref|NM_001014190.1| Rattus norvegicus similar to RIKEN cDNA 2810... 38 7.4
71gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 38 7.4
72dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 38 7.4
73gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 38 7.4
74gb|CP000038.1| Shigella sonnei Ss046, complete genome 38 7.4
75dbj|AB070934.1| Streptomyces avermitilis carotenoid biosynthetic... 38 7.4 
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 101    tgtgtccacatctgcagcctgg 122
              ||||||||||||||||||||||
Sbjct: 565529 tgtgtccacatctgcagcctgg 565550
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>gb|AC146560.21| Medicago truncatula clone mth2-12g6, complete sequence
          Length = 127820

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 116    agcctggctagaatggcttct 136
              |||||||||||||||||||||
Sbjct: 127354 agcctggctagaatggcttct 127334
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>gb|AC166972.8| Mus musculus chromosome 3, clone RP24-330F18, complete sequence
          Length = 142975

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   gcctggctagaatggcttct 136
             ||||||||||||||||||||
Sbjct: 35781 gcctggctagaatggcttct 35800
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>ref|NM_197902.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0056G17.17), mRNA
          Length = 1191

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 130  ggcttctgcagcagtgcggtgagg 153
            |||||||||||||| |||||||||
Sbjct: 1187 ggcttctgcagcagggcggtgagg 1164
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>gb|AC161226.7| Mus musculus chromosome 3, clone RP23-298B8, complete sequence
          Length = 200107

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 117  gcctggctagaatggcttct 136
            ||||||||||||||||||||
Sbjct: 8234 gcctggctagaatggcttct 8253
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>gb|DQ058819.1| Archaeon HR3812-Enrichment-019 clone HR-CF-Enrichment-019 16S
           ribosomal RNA gene, partial sequence
          Length = 1335

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 30  gaaggaacgtgaacgtgccg 49
           ||||||||||||||||||||
Sbjct: 724 gaaggaacgtgaacgtgccg 743
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>gb|AC154564.3| Mus musculus BAC clone RP23-402A16 from chromosome 16, complete sequence
          Length = 214128

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     tggatgaaccacaaaagctc 73
              ||||||||||||||||||||
Sbjct: 139971 tggatgaaccacaaaagctc 139952
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>dbj|AK138356.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230077F19 product:unclassifiable, full
            insert sequence
          Length = 2434

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   tggatgaaccacaaaagctc 73
            ||||||||||||||||||||
Sbjct: 1278 tggatgaaccacaaaagctc 1297
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>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence,
            complete sequence
          Length = 139999

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 130  ggcttctgcagcagtgcggtgagg 153
            |||||||||||||| |||||||||
Sbjct: 8349 ggcttctgcagcagggcggtgagg 8372
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 130      ggcttctgcagcagtgcggtgagg 153
                |||||||||||||| |||||||||
Sbjct: 22553680 ggcttctgcagcagggcggtgagg 22553703
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 130     ggcttctgcagcagtgcggtgagg 153
               ||||||||||||||||||| ||||
Sbjct: 5360791 ggcttctgcagcagtgcggcgagg 5360814



 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 105      tccacatctgcagcctggc 123
                |||||||||||||||||||
Sbjct: 27663222 tccacatctgcagcctggc 27663204
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>dbj|AP005257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0417F02
          Length = 150660

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   ggcttctgcagcagtgcggtgagg 153
             ||||||||||||||||||| ||||
Sbjct: 95155 ggcttctgcagcagtgcggcgagg 95178
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>dbj|AK119822.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D05, full
            insert sequence
          Length = 2183

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 130  ggcttctgcagcagtgcggtgagg 153
            |||||||||||||| |||||||||
Sbjct: 1187 ggcttctgcagcagggcggtgagg 1164
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>dbj|AK107128.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C02, full
            insert sequence
          Length = 1468

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 130  ggcttctgcagcagtgcggtgagg 153
            |||||||||||||| |||||||||
Sbjct: 1219 ggcttctgcagcagggcggtgagg 1196
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>dbj|AK071802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112H03, full
           insert sequence
          Length = 1613

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 130 ggcttctgcagcagtgcggtgagg 153
           |||||||||||||| |||||||||
Sbjct: 317 ggcttctgcagcagggcggtgagg 340
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 130      ggcttctgcagcagtgcggtgagg 153
                |||||||||||||| |||||||||
Sbjct: 22566148 ggcttctgcagcagggcggtgagg 22566171
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>gb|BC013800.1| Mus musculus RIKEN cDNA 2810432L12 gene, mRNA (cDNA clone MGC:6846
           IMAGE:2650271), complete cds
          Length = 1927

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 130 ggcttctgcagcagtgcgg 148
           |||||||||||||||||||
Sbjct: 547 ggcttctgcagcagtgcgg 565
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>ref|NM_129463.2| Arabidopsis thaliana unknown protein AT2G39060 mRNA, complete cds
          Length = 951

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 88  gatcagataagcatgtgtc 106
           |||||||||||||||||||
Sbjct: 257 gatcagataagcatgtgtc 239
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>ref|NM_129886.2| Arabidopsis thaliana nucleotide-sugar transporter/ sugar porter
            AT2G43240 mRNA, complete cds
          Length = 2576

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 122  gctagaatggcttctgcagcagt 144
            |||||||||| ||||||||||||
Sbjct: 2158 gctagaatggtttctgcagcagt 2180
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 103    tgtccacatctgcagcctg 121
              |||||||||||||||||||
Sbjct: 854654 tgtccacatctgcagcctg 854636
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>ref|XM_479406.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3125

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 105 tccacatctgcagcctggc 123
           |||||||||||||||||||
Sbjct: 925 tccacatctgcagcctggc 907
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>ref|NM_025944.2| Mus musculus RIKEN cDNA 2810432L12 gene (2810432L12Rik), mRNA
          Length = 2847

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 130 ggcttctgcagcagtgcgg 148
           |||||||||||||||||||
Sbjct: 636 ggcttctgcagcagtgcgg 654
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>gb|BC106539.1| Xenopus laevis cDNA clone MGC:131299 IMAGE:7764591, complete cds
          Length = 1196

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 114 gcagcctggctagaatggc 132
           |||||||||||||||||||
Sbjct: 214 gcagcctggctagaatggc 196
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>ref|XM_417519.1| PREDICTED: Gallus gallus similar to Beta-1,4-galactosyltransferase 5
            (Beta-1,4-GalTase 5) (Beta4Gal-T5) (b4Gal-T5)
            (UDP-galactose:beta-N-acetylglucosamine
            beta-1,4-galactosyltransferase 5) (UDP-Gal:beta-GlcNAc
            beta-1,4-galactosyltransferase 5) (Beta-1,4-GalT II)...
            (LOC419358), mRNA
          Length = 2053

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   gctcccaacacttgcagag 88
            |||||||||||||||||||
Sbjct: 1590 gctcccaacacttgcagag 1572
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>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete
             sequence
          Length = 145507

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 79    acttgcagagatcagataa 97
             |||||||||||||||||||
Sbjct: 10449 acttgcagagatcagataa 10467
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>ref|XM_588396.2| PREDICTED: Bos taurus similar to Protein FAM40A (LOC511120), mRNA
          Length = 3241

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 135 ctgcagcagtgcggtgagg 153
           |||||||||||||||||||
Sbjct: 717 ctgcagcagtgcggtgagg 735
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>gb|AC110716.6| Homo sapiens 3 BAC RP11-442N1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 67856

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 112   ctgcagcctggctagaatg 130
             |||||||||||||||||||
Sbjct: 50569 ctgcagcctggctagaatg 50587
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 79       acttgcagagatcagataa 97
                |||||||||||||||||||
Sbjct: 32358321 acttgcagagatcagataa 32358339
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>gb|AC132346.3| Mus musculus BAC clone RP24-179K8 from chromosome 3, complete sequence
          Length = 181261

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 85    agagatcagataagcatgt 103
             |||||||||||||||||||
Sbjct: 75695 agagatcagataagcatgt 75713
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>gb|AC127419.3| Mus musculus BAC clone RP24-242N1 from chromosome 8, complete sequence
          Length = 167099

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 135    ctgcagcagtgcggtgagg 153
              |||||||||||||||||||
Sbjct: 112738 ctgcagcagtgcggtgagg 112756
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>gb|AC125091.3| Mus musculus BAC clone RP24-165P5 from chromosome 18, complete sequence
          Length = 188837

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    tcccaacacttgcagagat 90
             |||||||||||||||||||
Sbjct: 65342 tcccaacacttgcagagat 65360
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>emb|AL603965.10| Human DNA sequence from clone RP11-145E20 on chromosome 10 Contains a
             ARF GTPase-activating protein (MRIP2) pseudogene, the gene
             for a novel protein similar to annexin A8 (ANXA8) the 5'
             end of a novel gene similar to LOC195977 (FLJ32754), a
             novel pseudogene and a novel gene, complete sequence
          Length = 104811

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 83    gcagagatcagataagcat 101
             |||||||||||||||||||
Sbjct: 58164 gcagagatcagataagcat 58182
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>emb|AL603966.9| Human DNA sequence from clone RP11-164N7 on chromosome 10 Contains a
            KIAA0187 pseudogene, a ARF GTPase-activating protein
            (MRIP2) pseudogene, the gene foe a novel protein tyrosine
            phosphatase (fragment) highly similar to DKFZP566K0524
            and the gene for a novel protein, complete sequence
          Length = 103737

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 83   gcagagatcagataagcat 101
            |||||||||||||||||||
Sbjct: 6817 gcagagatcagataagcat 6799
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>emb|AL591684.7| Human DNA sequence from clone RP11-301J7 on chromosome 10 Contains a
             KIAA0187 pseudogene, the gene for a novel protein similar
             to ARF GTPase-activating protein (MRIP2), the ANXA8 gene
             for annexin A8, the gene for a novel protein and one CpG
             island, complete sequence
          Length = 100066

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 83    gcagagatcagataagcat 101
             |||||||||||||||||||
Sbjct: 73806 gcagagatcagataagcat 73824
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>emb|AL391137.11| Human DNA sequence from clone RP11-144G6 on chromosome 10 Contains a
             KIAA0187 pseudogene, the gene for a novel protein similar
             to ARF GTPase-activating protein (MRIP2), the ANXA8L1 gene
             for annexin A8-like 1, a novel gene, the glutamate
             dehydrogenase pseudogene 8 (GLUDP8), a pseudogene similar
             to part of cathepsin L (CTSL), a novel gene, the gene for
             a novel protein, a dual specificity phosphatase 8 (DUSP8)
             pseudogene, the 5' end of a novel gene and two CpG
             islands, complete sequence
          Length = 178169

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 83    gcagagatcagataagcat 101
             |||||||||||||||||||
Sbjct: 35864 gcagagatcagataagcat 35846
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>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 79    acttgcagagatcagataa 97
             |||||||||||||||||||
Sbjct: 92088 acttgcagagatcagataa 92106
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 1       gcacatcaaacagcatatg 19
               |||||||||||||||||||
Sbjct: 2900449 gcacatcaaacagcatatg 2900431
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>emb|AL136982.11| Human DNA sequence from clone RP11-96C23 on chromosome 10 Contains a
             KIAA0187 pseudogene, the gene for adipose specific 2
             (APM2), the FAM25A gene for family with sequence
             similarity 25, member A, five novel genes, the GLUD1 gene
             for glutamate dehydrogenase 1, the 5' end of a novel gene
             and four CpG islands, complete sequence
          Length = 182959

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 83    gcagagatcagataagcat 101
             |||||||||||||||||||
Sbjct: 59870 gcagagatcagataagcat 59888
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 1       gcacatcaaacagcatatg 19
               |||||||||||||||||||
Sbjct: 2901083 gcacatcaaacagcatatg 2901065
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>gb|AC005770.3| Arabidopsis thaliana chromosome 2 clone T7F6 map CIC10A06, complete
             sequence
          Length = 96827

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 88    gatcagataagcatgtgtc 106
             |||||||||||||||||||
Sbjct: 79798 gatcagataagcatgtgtc 79816
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>gb|AC004450.3| Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete
             sequence
          Length = 90283

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 122   gctagaatggcttctgcagcagt 144
             |||||||||| ||||||||||||
Sbjct: 58464 gctagaatggtttctgcagcagt 58442
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>dbj|AK165526.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:G130202I16 product:hypothetical protein, full
           insert sequence
          Length = 2013

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 130 ggcttctgcagcagtgcgg 148
           |||||||||||||||||||
Sbjct: 641 ggcttctgcagcagtgcgg 659
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>dbj|AK221504.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
            clone: RAFL07-56-D23
          Length = 1423

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 122  gctagaatggcttctgcagcagt 144
            |||||||||| ||||||||||||
Sbjct: 1028 gctagaatggtttctgcagcagt 1050
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>dbj|AK042679.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730015A02 product:RIKEN cDNA
           2810432L12 gene, full insert sequence
          Length = 2076

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 130 ggcttctgcagcagtgcgg 148
           |||||||||||||||||||
Sbjct: 709 ggcttctgcagcagtgcgg 727
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>dbj|AK039788.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330108H03 product:hypothetical
           protein, full insert sequence
          Length = 2847

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 130 ggcttctgcagcagtgcgg 148
           |||||||||||||||||||
Sbjct: 636 ggcttctgcagcagtgcgg 654
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>dbj|AK013226.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810432L12 product:RIKEN cDNA
           2810432L12 gene, full insert sequence
          Length = 2004

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 130 ggcttctgcagcagtgcgg 148
           |||||||||||||||||||
Sbjct: 631 ggcttctgcagcagtgcgg 649
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>dbj|AK045523.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230208K17
           product:RIKEN cDNA 2810432L12 gene, full insert sequence
          Length = 2837

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 130 ggcttctgcagcagtgcgg 148
           |||||||||||||||||||
Sbjct: 556 ggcttctgcagcagtgcgg 574
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>gb|AC007308.13| Homo sapiens chromosome 22 clone pac408 map 22q11, complete sequence
          Length = 215788

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    agaatggcttctgcagcag 143
              |||||||||||||||||||
Sbjct: 158565 agaatggcttctgcagcag 158583
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>gb|AC002470.17| Homo sapiens Chromosome 22q11.2 BAC Clone b135h6 In BCRL2-GGT Region,
             complete sequence
          Length = 235395

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 125   agaatggcttctgcagcag 143
             |||||||||||||||||||
Sbjct: 87419 agaatggcttctgcagcag 87437
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>dbj|AK038514.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length
           enriched library, clone:A230021J02 product:RIKEN cDNA
           2810432L12 gene, full insert sequence
          Length = 2007

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 130 ggcttctgcagcagtgcgg 148
           |||||||||||||||||||
Sbjct: 641 ggcttctgcagcagtgcgg 659
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>dbj|AK075994.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2610017D21 product:RIKEN cDNA
           2810432L12 gene, full insert sequence
          Length = 1951

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 130 ggcttctgcagcagtgcgg 148
           |||||||||||||||||||
Sbjct: 586 ggcttctgcagcagtgcgg 604
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 79       acttgcagagatcagataa 97
                |||||||||||||||||||
Sbjct: 32448831 acttgcagagatcagataa 32448849
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 124      tagaatggcttctgcagcagtgc 146
                ||||||||||||||| |||||||
Sbjct: 27114170 tagaatggcttctgctgcagtgc 27114192
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>emb|BX820117.1|CNS0AA1I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS75ZF06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1624

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 122  gctagaatggcttctgcagcagt 144
            |||||||||| ||||||||||||
Sbjct: 1114 gctagaatggtttctgcagcagt 1136
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>emb|BX820748.1|CNS0A9NX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZB05 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1453

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 122  gctagaatggcttctgcagcagt 144
            |||||||||| ||||||||||||
Sbjct: 1018 gctagaatggtttctgcagcagt 1040
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>emb|BX820622.1|CNS0A9HH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH53ZB06 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1478

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 122  gctagaatggcttctgcagcagt 144
            |||||||||| ||||||||||||
Sbjct: 1015 gctagaatggtttctgcagcagt 1037
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>emb|BX819171.1|CNS0A9RJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB53ZF04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 927

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 88  gatcagataagcatgtgtc 106
           |||||||||||||||||||
Sbjct: 240 gatcagataagcatgtgtc 222
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>emb|BX820078.1|CNS0A9GA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS71ZE04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1296

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 122 gctagaatggcttctgcagcagt 144
           |||||||||| ||||||||||||
Sbjct: 963 gctagaatggtttctgcagcagt 985
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>emb|BX819705.1|CNS0A9CQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS19ZD06 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1449

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 122 gctagaatggcttctgcagcagt 144
           |||||||||| ||||||||||||
Sbjct: 971 gctagaatggtttctgcagcagt 993
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 131     gcttctgcagcagtgcggtgagg 153
               ||||| |||||||||||||||||
Sbjct: 1296540 gcttcggcagcagtgcggtgagg 1296562
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>gb|AY086047.1| Arabidopsis thaliana clone 20810 mRNA, complete sequence
          Length = 902

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 88  gatcagataagcatgtgtc 106
           |||||||||||||||||||
Sbjct: 257 gatcagataagcatgtgtc 239
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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0047B07
          Length = 157797

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 105    tccacatctgcagcctggc 123
              |||||||||||||||||||
Sbjct: 120215 tccacatctgcagcctggc 120197
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>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1477_F01
          Length = 158792

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 105   tccacatctgcagcctggc 123
             |||||||||||||||||||
Sbjct: 42324 tccacatctgcagcctggc 42306
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>dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0003E08
          Length = 135014

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 124   tagaatggcttctgcagcagtgc 146
             ||||||||||||||| |||||||
Sbjct: 21848 tagaatggcttctgctgcagtgc 21870
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>dbj|AK103870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149H24, full
           insert sequence
          Length = 3125

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 105 tccacatctgcagcctggc 123
           |||||||||||||||||||
Sbjct: 925 tccacatctgcagcctggc 907
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>gb|U29580.1|ECU29580 Escherichia coli K-12 genome; approximately 62 minute region
          Length = 13234

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   gcacatcaaacagcatatg 19
           |||||||||||||||||||
Sbjct: 291 gcacatcaaacagcatatg 273
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>emb|AL772310.27| Mouse DNA sequence from clone RP23-34B24 on chromosome 4, complete
              sequence
          Length = 211901

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 130    ggcttctgcagcagtgcgg 148
              |||||||||||||||||||
Sbjct: 174779 ggcttctgcagcagtgcgg 174761
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>emb|AL732521.18| Mouse DNA sequence from clone RP23-134A17 on chromosome 4, complete
             sequence
          Length = 207223

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 130   ggcttctgcagcagtgcgg 148
             |||||||||||||||||||
Sbjct: 39946 ggcttctgcagcagtgcgg 39928
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>gb|BC089972.1| Rattus norvegicus similar to RIKEN cDNA 2810432L12, mRNA (cDNA
           clone MGC:109354 IMAGE:7315559), complete cds
          Length = 1795

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 130 ggcttctgcagcagtgcgg 148
           |||||||||||||||||||
Sbjct: 412 ggcttctgcagcagtgcgg 430
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>ref|NM_001014190.1| Rattus norvegicus similar to RIKEN cDNA 2810432L12 (RGD1307218),
           mRNA
          Length = 1795

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 130 ggcttctgcagcagtgcgg 148
           |||||||||||||||||||
Sbjct: 412 ggcttctgcagcagtgcgg 430
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 1       gcacatcaaacagcatatg 19
               |||||||||||||||||||
Sbjct: 3689842 gcacatcaaacagcatatg 3689824
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 1       gcacatcaaacagcatatg 19
               |||||||||||||||||||
Sbjct: 3622544 gcacatcaaacagcatatg 3622526
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 1       gcacatcaaacagcatatg 19
               |||||||||||||||||||
Sbjct: 2752853 gcacatcaaacagcatatg 2752835
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 1       gcacatcaaacagcatatg 19
               |||||||||||||||||||
Sbjct: 3068295 gcacatcaaacagcatatg 3068277
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>dbj|AB070934.1| Streptomyces avermitilis carotenoid biosynthetic gene cluster
          Length = 14304

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 131   gcttctgcagcagtgcggtgagg 153
             ||||| |||||||||||||||||
Sbjct: 12475 gcttcggcagcagtgcggtgagg 12497


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,386,001
Number of Sequences: 3902068
Number of extensions: 1386001
Number of successful extensions: 91160
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90729
Number of HSP's gapped (non-prelim): 431
length of query: 153
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 132
effective length of database: 17,151,101,840
effective search space: 2263945442880
effective search space used: 2263945442880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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