ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast75d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2... 32 0.87
2EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4... 31 1.1
3YBF1_YEAST (P34217) Hypothetical 73.8 kDa protein in SAS3-SEC17 ... 29 4.3
4HEMN_RALEU (O34162) Oxygen-independent coproporphyrinogen III ox... 29 4.3
5EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5... 29 4.3
6XKDD_BACSU (P39783) Phage-like element PBSX protein xkdD 29 5.7
7YD56_SCHPO (Q10309) Putative phospholipid-transporting ATPase C6... 29 5.7
8ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7 28 7.4
9GLMS_CHLCV (Q821Z7) Glucosamine--fructose-6-phosphate aminotrans... 28 9.7
10OS25_PLARE (P19455) 25 kDa ookinete surface antigen precursor (P... 28 9.7
11ZFP37_HUMAN (Q9Y6Q3) Zinc finger protein 37 homolog (Zfp-37) 28 9.7
12LYS2_PENCH (O74298) L-aminoadipate-semialdehyde dehydrogenase la... 28 9.7

>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)|
           (Ath-ExpBeta-1.4)
          Length = 273

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 434 VVNNVIPVSWKAGATYRSLVNY 369
           V +NVIP +W+ GA Y+S VN+
Sbjct: 252 VASNVIPANWQPGAIYKSNVNF 273



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>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)|
           (Ath-ExpBeta-1.1)
          Length = 259

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 434 VVNNVIPVSWKAGATYRSLVNY 369
           V  NVIP +WK   +YRS+VN+
Sbjct: 238 VAYNVIPANWKPDESYRSIVNF 259



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>YBF1_YEAST (P34217) Hypothetical 73.8 kDa protein in SAS3-SEC17 intergenic|
           region
          Length = 668

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = +1

Query: 100 LHHKLFSSTTKQRKRNKIQTNRRHASLGER*EAIEGRASTILAWPTLPLLTQASGHSRTH 279
           +HH    ++  Q ++ + QT +   S  ++ ++   + +T+     +P     SG+S  H
Sbjct: 471 IHHSSQYNSADQPQQPQPQTQQNVQSAAQQQQSFLRQQATLTPSSRIP-----SGYSANH 525

Query: 280 IRINIYNPRSRN 315
            +IN  NP  RN
Sbjct: 526 YQINSVNPLLRN 537



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>HEMN_RALEU (O34162) Oxygen-independent coproporphyrinogen III oxidase (EC|
           1.3.99.22) (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 491

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -1

Query: 112 ACGAVQLMLHAHVPSCVSVCF---CSAILERN 26
           AC A  L L+ H+P C ++C+   C+ I+ R+
Sbjct: 57  ACRADALSLYLHIPFCENICYYCGCNKIITRD 88



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>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)|
           (Ath-ExpBeta-1.3)
          Length = 264

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 434 VVNNVIPVSWKAGATYRSLVNYP 366
           +   VIP  W  GA Y S VN+P
Sbjct: 236 IAKGVIPEKWSPGAIYHSKVNFP 258



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>XKDD_BACSU (P39783) Phage-like element PBSX protein xkdD|
          Length = 116

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 361 LASNQEVQSNLEPWVNFYCGDYKYLYVYASGNGRRLVSEEEE 236
           LA  ++ + +  PW    CGD K +Y+Y++       SEEE+
Sbjct: 4   LAKTKQAEKSPAPWRAVPCGDTKPIYIYSA------YSEEEK 39



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>YD56_SCHPO (Q10309) Putative phospholipid-transporting ATPase C6C3.06c (EC|
           3.6.3.1)
          Length = 1033

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 46  CKNTHSHNLVHGRATLVALHHKLFSSTTKQRKR 144
           C N H+  +VH  A + ++HH   + T   +KR
Sbjct: 235 CSNQHTEGIVHADAPIKSVHHFYGTFTLNNQKR 267



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>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7|
          Length = 920

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 406 GRPEPPTAPWLTTPKLASNQEVQSNLEP 323
           G P PP  P  + P ++ NQEV+S   P
Sbjct: 372 GNPTPPMTPSSSVPYMSPNQEVKSPFLP 399



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>GLMS_CHLCV (Q821Z7) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 608

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 367 PKLASNQEVQSNLEPWVNFYCGDYKYLYVYASGNGRRLV 251
           P+L +      NL  W N YC + +++++     GRRL+
Sbjct: 442 PELCNRLLANENLHSWANDYCDEDRFIFL-----GRRLM 475



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>OS25_PLARE (P19455) 25 kDa ookinete surface antigen precursor (Prs25)|
          Length = 217

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 122 EEKSLWCSATNVARPCTKLCECVFLQRNP 36
           EEK L C  T V +PC    +C+ +  +P
Sbjct: 59  EEKVLKCDETTVNKPCGDFSKCIKIDGSP 87



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>ZFP37_HUMAN (Q9Y6Q3) Zinc finger protein 37 homolog (Zfp-37)|
          Length = 597

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 58  HSHNLVHGRATLVALHHKLFSSTTKQRKRNKIQTNRRHASL 180
           HS N V  ++     H K F+ +    ++ K QT ++H  L
Sbjct: 160 HSRNCVKRKSDAAKEHKKSFNHSLSDTRKGKKQTGKKHEKL 200



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>LYS2_PENCH (O74298) L-aminoadipate-semialdehyde dehydrogenase large subunit|
           (EC 1.2.1.31) (Alpha-aminoadipate reductase) (Alpha-AR)
          Length = 1409

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 379 WLTTPKL-ASNQEVQSNLEPWVNFYCGDYKYLY 284
           W   P++ A   + +S  EPW  FY G    LY
Sbjct: 662 WFVNPEIWAEKDQAESRNEPWRQFYVGPRDRLY 694


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,566,960
Number of Sequences: 219361
Number of extensions: 1163353
Number of successful extensions: 2918
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2918
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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