ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast74h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC025726.2| Caenorhabditis elegans cosmid Y71G12B, complete s... 48 0.013
2gb|AC164570.3| Mus musculus BAC clone CH25-194I22 from chromosom... 46 0.050
3emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 46 0.050
4ref|NM_117871.3| Arabidopsis thaliana unknown protein AT4G17620 ... 44 0.20
5ref|NM_001036577.1| Arabidopsis thaliana unknown protein AT4G176... 44 0.20
6ref|XM_453330.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D06017g ... 44 0.20
7gb|DQ483705.1| Gymnogyps californianus clone 128F microsatellite... 44 0.20
8ref|XM_752296.1| Ustilago maydis 521 hypothetical protein (UM012... 44 0.20
9emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA ... 44 0.20
10gb|AY133815.1| Arabidopsis thaliana clone U18774 unknown protein... 44 0.20
11gb|AY074548.1| Arabidopsis thaliana unknown protein (At4g17620) ... 44 0.20
12emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 44 0.20
13emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, ... 44 0.20
14gb|AC004680.3| Arabidopsis thaliana chromosome 2 clone F23F1 map... 44 0.20
15gb|AF317727.1|AF317727 Mus musculus killer cell lectin-like rece... 44 0.20
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.20
17gb|AC037424.10|AC037424 Arabidopsis thaliana chromosome 1 BAC F1... 44 0.20
18dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.20
19gb|AC172750.1| Mus musculus BAC clone RP24-177J9 from chromosome... 44 0.20
20gb|AC167813.4| Mus musculus BAC clone RP24-233L18 from chromosom... 44 0.20
21dbj|AB020860.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-onco... 44 0.20
22ref|XM_550471.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.77
23ref|XM_469982.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.77
24gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome... 42 0.77
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.77
26ref|XM_756935.1| Ustilago maydis 521 hypothetical protein (UM058... 42 0.77
27gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosom... 42 0.77
28gb|AC129319.4| Mus musculus BAC clone RP24-127J16 from chromosom... 42 0.77
29gb|AC122817.3| Mus musculus BAC clone RP23-241M6 from 16, comple... 42 0.77
30gb|AC098732.3| Mus musculus BAC clone RP23-3L20 from 3, complete... 42 0.77
31ref|XM_723171.1| Plasmodium yoelii yoelii str. 17XNL retinitis p... 42 0.77
32gb|AC102510.5| Mus musculus chromosome 5, clone RP24-346C14, com... 42 0.77
33gb|AC162282.6| Mus musculus chromosome 8, clone RP23-154H18, com... 42 0.77
34emb|AL132825.35|HSDJ756N5 Human DNA sequence from clone RP4-756N... 42 0.77
35emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, c... 42 0.77
36gb|AC164573.5| Mus musculus 10 BAC RP24-221D13 (Roswell Park Can... 42 0.77
37emb|AL645598.14| Mouse DNA sequence from clone RP23-259J23 on ch... 42 0.77
38emb|CR392340.11| Zebrafish DNA sequence from clone DKEY-23G12 in... 42 0.77
39gb|AC105299.44| Mus musculus strain C57BL/6J clone rp23-27h12 ma... 42 0.77
40gb|AC175205.2| Sporobolomyces roseus clone JGIBAIF-5L1, complete... 42 0.77
41gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 0.77
42gb|AC102528.20| Mus musculus chromosome 5, clone RP23-30D20, com... 42 0.77
43gb|AC102625.8| Mus musculus chromosome 8, clone RP23-453E3, comp... 42 0.77
44gb|AC153507.11| Mus musculus 10 BAC RP23-411J14 (Roswell Park Ca... 42 0.77
45dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.77
46dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.77
47gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genom... 42 0.77
48gb|AC154613.3| Mus musculus BAC clone RP23-338M12 from chromosom... 42 0.77
49gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.77
50gb|AF075597.1|T2H3 Arabidopsis thaliana BAC T2H3 42 0.77
51dbj|AP000616.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.77
52dbj|AK111490.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.77
53gb|AC105300.24| Mus musculus strain C57BL/6J clone rp23-291e5 ma... 42 0.77
54dbj|AK104696.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.77
55dbj|AK101029.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.77
56dbj|AK099212.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.77
57dbj|AK070731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.77
58ref|NM_209869.1| Eremothecium gossypii AEL344Wp (AEL344W), mRNA 42 0.77
59dbj|AK069387.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.77
60dbj|AK066641.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.77
61gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.77
62gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from ch... 42 0.77
63emb|AL928795.6| Mouse DNA sequence from clone RP23-38B1 on chrom... 42 0.77
64dbj|D88767.1| Nematode mRNA for EMB-5, complete cds 42 0.77
65dbj|AP004782.3| Homo sapiens genomic DNA, chromosome 11 clone:CM... 42 0.77
66ref|NM_122200.3| Arabidopsis thaliana catalytic AT5G22940 mRNA, ... 40 3.1
67gb|AF442376.1| Pinus taeda clone PtTX4186 microsatellite sequence 40 3.1
68gb|AY057390.1| Serratia plymuthica RNA polymerase sigma-70 subun... 40 3.1
69gb|BT014962.1| Arabidopsis thaliana At5g22940 gene, complete cds 40 3.1
70gb|AC119954.12| Mus musculus chromosome 1, clone RP24-450P2, com... 40 3.1
71ref|XM_707081.1| Candida albicans SC5314 vacuolar ATPase V1 doma... 40 3.1
72ref|XM_706608.1| Candida albicans SC5314 vacuolar ATPase V1 doma... 40 3.1
73gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, com... 40 3.1
74gb|BT011629.1| Arabidopsis thaliana At5g22940 mRNA, complete cds 40 3.1
75ref|XM_806144.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 3.1
76ref|XM_776120.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.1
77dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
78emb|BX832141.1|CNS09ZQ7 Arabidopsis thaliana Full-length cDNA Co... 40 3.1
79dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.1
80dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
81dbj|AP000863.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 3.1
82emb|AL833796.4| Mouse DNA sequence from clone RP23-361A12 on chr... 40 3.1 
>gb|AC025726.2| Caenorhabditis elegans cosmid Y71G12B, complete sequence
          Length = 191954

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 212    ccaagacgaagacgaagaagacga 235
              ||||||||||||||||||||||||
Sbjct: 137050 ccaagacgaagacgaagaagacga 137027
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>gb|AC164570.3| Mus musculus BAC clone CH25-194I22 from chromosome 5, complete sequence
          Length = 103796

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 216   gacgaagacgaagaagacgacga 238
             |||||||||||||||||||||||
Sbjct: 68509 gacgaagacgaagaagacgacga 68531



 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             |||||||||| ||||||||||||||
Sbjct: 68471 aagacgaagaagaagaagacgacga 68495
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>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 216    gacgaagacgaagaagacgacga 238
              |||||||||||||||||||||||
Sbjct: 484935 gacgaagacgaagaagacgacga 484957
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>ref|NM_117871.3| Arabidopsis thaliana unknown protein AT4G17620 transcript variant
           AT4G17620.1 mRNA, complete cds
          Length = 1873

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 214 aagacgaagacgaagaagacga 235
           ||||||||||||||||||||||
Sbjct: 239 aagacgaagacgaagaagacga 218
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>ref|NM_001036577.1| Arabidopsis thaliana unknown protein AT4G17620 transcript variant
           AT4G17620.2 mRNA, complete cds
          Length = 1873

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 214 aagacgaagacgaagaagacga 235
           ||||||||||||||||||||||
Sbjct: 239 aagacgaagacgaagaagacga 218
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>ref|XM_453330.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D06017g predicted mRNA
          Length = 1779

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 214  aagacgaagacgaagaagacga 235
            ||||||||||||||||||||||
Sbjct: 1235 aagacgaagacgaagaagacga 1256
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>gb|DQ483705.1| Gymnogyps californianus clone 128F microsatellite sequence
          Length = 437

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 214 aagacgaagacgaagaagacga 235
           ||||||||||||||||||||||
Sbjct: 216 aagacgaagacgaagaagacga 237
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>ref|XM_752296.1| Ustilago maydis 521 hypothetical protein (UM01242.1) partial mRNA
          Length = 2118

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 214  aagacgaagacgaagaagacga 235
            ||||||||||||||||||||||
Sbjct: 986  aagacgaagacgaagaagacga 1007
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>emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8
          Length = 207674

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 214    aagacgaagacgaagaagacga 235
              ||||||||||||||||||||||
Sbjct: 186924 aagacgaagacgaagaagacga 186903
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>gb|AY133815.1| Arabidopsis thaliana clone U18774 unknown protein (At4g17620) mRNA,
           complete cds
          Length = 1666

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 214 aagacgaagacgaagaagacga 235
           ||||||||||||||||||||||
Sbjct: 148 aagacgaagacgaagaagacga 127
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>gb|AY074548.1| Arabidopsis thaliana unknown protein (At4g17620) mRNA, complete cds
          Length = 1782

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 214 aagacgaagacgaagaagacga 235
           ||||||||||||||||||||||
Sbjct: 184 aagacgaagacgaagaagacga 163
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>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1715506

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 214    aagacgaagacgaagaagacga 235
              ||||||||||||||||||||||
Sbjct: 517272 aagacgaagacgaagaagacga 517293
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>emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46
          Length = 198788

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 214    aagacgaagacgaagaagacga 235
              ||||||||||||||||||||||
Sbjct: 176289 aagacgaagacgaagaagacga 176268
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>gb|AC004680.3| Arabidopsis thaliana chromosome 2 clone F23F1 map m283, complete
             sequence
          Length = 88543

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 214   aagacgaagacgaagaagacga 235
             ||||||||||||||||||||||
Sbjct: 45237 aagacgaagacgaagaagacga 45258
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>gb|AF317727.1|AF317727 Mus musculus killer cell lectin-like receptor G1 (Klrg1) gene, complete
             cds
          Length = 13297

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 214   aagacgaagacgaagaagacga 235
             ||||||||||||||||||||||
Sbjct: 11174 aagacgaagacgaagaagacga 11153
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 211      accaagacgaagacgaagaaga 232
                ||||||||||||||||||||||
Sbjct: 26209629 accaagacgaagacgaagaaga 26209608



 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 214    aagacgaagacgaagaagacgacga 238
              |||||||||||||||| ||||||||
Sbjct: 522137 aagacgaagacgaagacgacgacga 522161
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>gb|AC037424.10|AC037424 Arabidopsis thaliana chromosome 1 BAC F19K6 genomic sequence, complete
             sequence
          Length = 75948

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 214   aagacgaagacgaagaagacga 235
             ||||||||||||||||||||||
Sbjct: 60634 aagacgaagacgaagaagacga 60613
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>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0453H04
          Length = 175047

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 211   accaagacgaagacgaagaaga 232
             ||||||||||||||||||||||
Sbjct: 74169 accaagacgaagacgaagaaga 74148
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>gb|AC172750.1| Mus musculus BAC clone RP24-177J9 from chromosome 7, complete sequence
          Length = 145766

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 214    aagacgaagacgaagaagacga 235
              ||||||||||||||||||||||
Sbjct: 103666 aagacgaagacgaagaagacga 103687



 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 214    aagacgaagacgaagaagacga 235
              ||||||||||||||||||||||
Sbjct: 103642 aagacgaagacgaagaagacga 103663
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>gb|AC167813.4| Mus musculus BAC clone RP24-233L18 from chromosome 7, complete sequence
          Length = 172485

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 214   aagacgaagacgaagaagacga 235
             ||||||||||||||||||||||
Sbjct: 42865 aagacgaagacgaagaagacga 42886



 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 214   aagacgaagacgaagaagacga 235
             ||||||||||||||||||||||
Sbjct: 42841 aagacgaagacgaagaagacga 42862
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>dbj|AB020860.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular
             colorectal and non-small cell lung cancer , segment 3/11
          Length = 100000

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 214   aagacgaagacgaagaagacga 235
             ||||||||||||||||||||||
Sbjct: 13798 aagacgaagacgaagaagacga 13777
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>ref|XM_550471.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2113

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 214 aagacgaagacgaagaagacgacga 238
           |||||||||||||||| ||||||||
Sbjct: 80  aagacgaagacgaagacgacgacga 104
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>ref|XM_469982.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1800

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 214  aagacgaagacgaagaagacgacga 238
            ||||||||||||||||||| |||||
Sbjct: 1580 aagacgaagacgaagaagatgacga 1604
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>gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0084F23, complete sequence
          Length = 89829

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 214   aagacgaagacgaagaagacg 234
             |||||||||||||||||||||
Sbjct: 43510 aagacgaagacgaagaagacg 43530
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 214      aagacgaagacgaagaagacgacga 238
                ||||||||||||||||||| |||||
Sbjct: 33179971 aagacgaagacgaagaagatgacga 33179995



 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 212     ccaagacgaagacgaagaaga 232
               |||||||||||||||||||||
Sbjct: 8183603 ccaagacgaagacgaagaaga 8183583
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>ref|XM_756935.1| Ustilago maydis 521 hypothetical protein (UM05881.1) partial mRNA
          Length = 564

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 214 aagacgaagacgaagaagacgacga 238
           ||||||||||||||||||| |||||
Sbjct: 266 aagacgaagacgaagaagaagacga 290
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>gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosome 16, complete sequence
          Length = 196646

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 214    aagacgaagacgaagaagacgacga 238
              ||||||||||||| |||||||||||
Sbjct: 168651 aagacgaagacgacgaagacgacga 168627
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>gb|AC129319.4| Mus musculus BAC clone RP24-127J16 from chromosome 8, complete sequence
          Length = 169835

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             |||| ||||||||||||||||||||
Sbjct: 11159 aagaagaagacgaagaagacgacga 11135
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>gb|AC122817.3| Mus musculus BAC clone RP23-241M6 from 16, complete sequence
          Length = 185702

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 214    aagacgaagacgaagaagacgacga 238
              ||||||||||||| |||||||||||
Sbjct: 182212 aagacgaagacgacgaagacgacga 182236
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>gb|AC098732.3| Mus musculus BAC clone RP23-3L20 from 3, complete sequence
          Length = 274210

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             |||||||||| ||||||||||||||
Sbjct: 73714 aagacgaagaagaagaagacgacga 73690
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>ref|XM_723171.1| Plasmodium yoelii yoelii str. 17XNL retinitis pigmentosa GTPase
           regulator protein (PY01014) partial mRNA
          Length = 2025

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 214 aagacgaagacgaagaagacgacga 238
           |||||||||||||||| ||||||||
Sbjct: 443 aagacgaagacgaagatgacgacga 467
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>gb|AC102510.5| Mus musculus chromosome 5, clone RP24-346C14, complete sequence
          Length = 180051

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 214  aagacgaagacgaagaagacgacga 238
            |||||||||||||||| ||||||||
Sbjct: 5134 aagacgaagacgaagacgacgacga 5158
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>gb|AC162282.6| Mus musculus chromosome 8, clone RP23-154H18, complete sequence
          Length = 217566

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             |||| ||||||||||||||||||||
Sbjct: 25816 aagaagaagacgaagaagacgacga 25840
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>emb|AL132825.35|HSDJ756N5 Human DNA sequence from clone RP4-756N5 on chromosome 20q11.21-12
             Contains the MYH7B gene for myosin heavy polypeptide 7B
             (cardiac muscle) beta, the C20orf188 gene for a novel
             protein similar to Trp4-associated protein TAP1 (ABCB2)
             and two CpG islands, complete sequence
          Length = 123782

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             |||| ||||||||||||||||||||
Sbjct: 80193 aagaagaagacgaagaagacgacga 80217



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   aagacgaagacgaagaagac 233
             ||||||||||||||||||||
Sbjct: 80347 aagacgaagacgaagaagac 80366
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>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
          Length = 194892

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             |||||||||||||||| ||||||||
Sbjct: 11990 aagacgaagacgaagacgacgacga 11966
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>gb|AC164573.5| Mus musculus 10 BAC RP24-221D13 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 163890

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    ggaacatttatacatagcctt 39
             |||||||||||||||||||||
Sbjct: 24542 ggaacatttatacatagcctt 24522
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>emb|AL645598.14| Mouse DNA sequence from clone RP23-259J23 on chromosome 11 Contains a
             ribosomal protein S17 (Rps17) pseudogene, complete
             sequence
          Length = 141141

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 65    gatgatgcatgattcacagat 85
             |||||||||||||||||||||
Sbjct: 31215 gatgatgcatgattcacagat 31235
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>emb|CR392340.11| Zebrafish DNA sequence from clone DKEY-23G12 in linkage group 20,
             complete sequence
          Length = 247887

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 211   accaagacgaagacgaagaagacga 235
             ||||||| |||||||||||||||||
Sbjct: 10503 accaagaagaagacgaagaagacga 10479
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>gb|AC105299.44| Mus musculus strain C57BL/6J clone rp23-27h12 map 17, complete sequence
          Length = 221749

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             ||||||||||||| |||||||||||
Sbjct: 13227 aagacgaagacgacgaagacgacga 13203
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>gb|AC175205.2| Sporobolomyces roseus clone JGIBAIF-5L1, complete sequence
          Length = 36144

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             ||||||||||||| |||||||||||
Sbjct: 33424 aagacgaagacgaggaagacgacga 33448
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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
            complete sequence
          Length = 1519138

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 214  aagacgaagacgaagaagacgacga 238
            ||||||||||||||||||| |||||
Sbjct: 6620 aagacgaagacgaagaagaagacga 6644
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>gb|AC102528.20| Mus musculus chromosome 5, clone RP23-30D20, complete sequence
          Length = 241925

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 214    aagacgaagacgaagaagacgacga 238
              |||||||||||||||| ||||||||
Sbjct: 220196 aagacgaagacgaagacgacgacga 220220
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>gb|AC102625.8| Mus musculus chromosome 8, clone RP23-453E3, complete sequence
          Length = 167288

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             |||| ||||||||||||||||||||
Sbjct: 96683 aagaagaagacgaagaagacgacga 96659
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>gb|AC153507.11| Mus musculus 10 BAC RP23-411J14 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 190405

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ggaacatttatacatagcctt 39
             |||||||||||||||||||||
Sbjct: 21036 ggaacatttatacatagcctt 21056
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 214     aagacgaagacgaagaagacg 234
               |||||||||||||||||||||
Sbjct: 7514591 aagacgaagacgaagaagacg 7514571
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 214      aagacgaagacgaagaagacgacga 238
                ||||||||||||||||||| |||||
Sbjct: 33270481 aagacgaagacgaagaagatgacga 33270505



 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 212     ccaagacgaagacgaagaaga 232
               |||||||||||||||||||||
Sbjct: 8181438 ccaagacgaagacgaagaaga 8181418
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>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete
             sequence
          Length = 144487

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             ||||||||||||||||||| |||||
Sbjct: 64584 aagacgaagacgaagaagatgacga 64560
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>gb|AC154613.3| Mus musculus BAC clone RP23-338M12 from chromosome 13, complete sequence
          Length = 200093

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 214    aagacgaagacgaagaagacgacga 238
              ||||||||||||||| |||||||||
Sbjct: 101159 aagacgaagacgaaggagacgacga 101183
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>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12,
              complete sequence
          Length = 195583

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 212    ccaagacgaagacgaagaaga 232
              |||||||||||||||||||||
Sbjct: 115033 ccaagacgaagacgaagaaga 115013
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>gb|AF075597.1|T2H3 Arabidopsis thaliana BAC T2H3
          Length = 48689

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             |||||||||||||||| ||||||||
Sbjct: 40288 aagacgaagacgaagacgacgacga 40312
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>dbj|AP000616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0514G12
          Length = 138929

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             |||||||||||||||| ||||||||
Sbjct: 67645 aagacgaagacgaagacgacgacga 67669
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>dbj|AK111490.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A19, full
           insert sequence
          Length = 4823

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 214 aagacgaagacgaagaagacgacga 238
           |||||||||||||||| ||||||||
Sbjct: 85  aagacgaagacgaagacgacgacga 109
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>gb|AC105300.24| Mus musculus strain C57BL/6J clone rp23-291e5 map 17, complete sequence
          Length = 168882

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 214    aagacgaagacgaagaagacgacga 238
              ||||||||||||| |||||||||||
Sbjct: 110130 aagacgaagacgacgaagacgacga 110154
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>dbj|AK104696.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A09, full
            insert sequence
          Length = 1821

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 214  aagacgaagacgaagaagacgacga 238
            ||||||||||||||||||| |||||
Sbjct: 1605 aagacgaagacgaagaagatgacga 1629
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>dbj|AK101029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150H24, full
           insert sequence
          Length = 2112

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 214 aagacgaagacgaagaagacgacga 238
           |||||||||||||||| ||||||||
Sbjct: 79  aagacgaagacgaagacgacgacga 103
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>dbj|AK099212.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070J17, full
            insert sequence
          Length = 1772

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 214  aagacgaagacgaagaagacgacga 238
            ||||||||||||||||||| |||||
Sbjct: 1603 aagacgaagacgaagaagatgacga 1627
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>dbj|AK070731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061A01, full
            insert sequence
          Length = 1851

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 214  aagacgaagacgaagaagacgacga 238
            ||||||||||||||||||| |||||
Sbjct: 1603 aagacgaagacgaagaagatgacga 1627
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>ref|NM_209869.1| Eremothecium gossypii AEL344Wp (AEL344W), mRNA
          Length = 1623

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 214 aagacgaagacgaagaagacgacga 238
           ||||||||||||||||||| |||||
Sbjct: 743 aagacgaagacgaagaagaagacga 767
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>dbj|AK069387.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023016D17, full
           insert sequence
          Length = 3250

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 214 aagacgaagacgaagaagacg 234
           |||||||||||||||||||||
Sbjct: 50  aagacgaagacgaagaagacg 30
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>dbj|AK066641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072M14, full
           insert sequence
          Length = 2798

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 212 ccaagacgaagacgaagaaga 232
           |||||||||||||||||||||
Sbjct: 172 ccaagacgaagacgaagaaga 152
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 214     aagacgaagacgaagaagacg 234
               |||||||||||||||||||||
Sbjct: 7584677 aagacgaagacgaagaagacg 7584657
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>gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from chromosome IV, from 10.8 cM to 11.6
              cM, complete sequence
          Length = 105654

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 214    aagacgaagacgaagaagacgacga 238
              |||||||||||||||| ||||||||
Sbjct: 102605 aagacgaagacgaagacgacgacga 102581
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>emb|AL928795.6| Mouse DNA sequence from clone RP23-38B1 on chromosome 2, complete
             sequence
          Length = 28716

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 214   aagacgaagacgaagaagacgacga 238
             ||||||||||||||||||| |||||
Sbjct: 20795 aagacgaagacgaagaagaagacga 20771
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>dbj|D88767.1| Nematode mRNA for EMB-5, complete cds
          Length = 4566

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 214 aagacgaagacgaagaagacgacga 238
           ||||||||||||| |||||||||||
Sbjct: 140 aagacgaagacgatgaagacgacga 164
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>dbj|AP004782.3| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-103B16, complete
              sequence
          Length = 119191

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 214    aagacgaagacgaagaagacgacga 238
              ||||||| |||||||||||||||||
Sbjct: 102665 aagacgacgacgaagaagacgacga 102689
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>ref|NM_122200.3| Arabidopsis thaliana catalytic AT5G22940 mRNA, complete cds
          Length = 1956

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 210 caccaagacgaagacgaagaagac 233
           |||||||||||||| |||||||||
Sbjct: 289 caccaagacgaagaagaagaagac 312
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>gb|AF442376.1| Pinus taeda clone PtTX4186 microsatellite sequence
          Length = 147

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 215 agacgaagacgaagaagacgacga 238
           ||||||||||||||| ||||||||
Sbjct: 62  agacgaagacgaagacgacgacga 85
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>gb|AY057390.1| Serratia plymuthica RNA polymerase sigma-70 subunit (rpoD) gene,
           complete cds
          Length = 2367

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 219 gaagacgaagaagacgacga 238
           ||||||||||||||||||||
Sbjct: 964 gaagacgaagaagacgacga 983
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>gb|BT014962.1| Arabidopsis thaliana At5g22940 gene, complete cds
          Length = 1410

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 210 caccaagacgaagacgaagaagac 233
           |||||||||||||| |||||||||
Sbjct: 30  caccaagacgaagaagaagaagac 53
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>gb|AC119954.12| Mus musculus chromosome 1, clone RP24-450P2, complete sequence
          Length = 179212

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    ttgcatgcggcagatgcatc 185
              ||||||||||||||||||||
Sbjct: 114699 ttgcatgcggcagatgcatc 114680
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>ref|XM_707081.1| Candida albicans SC5314 vacuolar ATPase V1 domain subunit B
            (CaO19.13955), mRNA
          Length = 1539

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 214  aagacgaagacgaagaagac 233
            ||||||||||||||||||||
Sbjct: 1484 aagacgaagacgaagaagac 1503
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>ref|XM_706608.1| Candida albicans SC5314 vacuolar ATPase V1 domain subunit B
            (CaO19.6634), mRNA
          Length = 1539

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 214  aagacgaagacgaagaagac 233
            ||||||||||||||||||||
Sbjct: 1484 aagacgaagacgaagaagac 1503
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>gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, complete sequence
          Length = 167687

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    ttgcatgcggcagatgcatc 185
              ||||||||||||||||||||
Sbjct: 118324 ttgcatgcggcagatgcatc 118343
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>gb|BT011629.1| Arabidopsis thaliana At5g22940 mRNA, complete cds
          Length = 1827

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 210 caccaagacgaagacgaagaagac 233
           |||||||||||||| |||||||||
Sbjct: 253 caccaagacgaagaagaagaagac 276
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>ref|XM_806144.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053503733.30) partial mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gaagacgaagaagacgacga 238
           ||||||||||||||||||||
Sbjct: 110 gaagacgaagaagacgacga 91
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>ref|XM_776120.1| PREDICTED: Strongylocentrotus purpuratus similar to HECT, UBA and WWE
            domain containing 1 (LOC575742), mRNA
          Length = 7245

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  gacgaagacgaagaagacga 235
            ||||||||||||||||||||
Sbjct: 2173 gacgaagacgaagaagacga 2192
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 214      aagacgaagacgaagaagacgacg 237
                ||||||||||||||||||| ||||
Sbjct: 21672889 aagacgaagacgaagaagaagacg 21672912
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>emb|BX832141.1|CNS09ZQ7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH54ZD09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1816

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 210 caccaagacgaagacgaagaagac 233
           |||||||||||||| |||||||||
Sbjct: 262 caccaagacgaagaagaagaagac 285
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>dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17
          Length = 86065

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 210   caccaagacgaagacgaagaagac 233
             |||||||||||||| |||||||||
Sbjct: 71710 caccaagacgaagaagaagaagac 71733
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>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1612_A04
          Length = 124833

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 214    aagacgaagacgaagaagacgacg 237
              ||||||||||||||||||| ||||
Sbjct: 103345 aagacgaagacgaagaagaagacg 103368
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>dbj|AP000863.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-6L9, complete
             sequence
          Length = 123320

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     tagaaattaaaagccgggaa 22
             ||||||||||||||||||||
Sbjct: 29300 tagaaattaaaagccgggaa 29319
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>emb|AL833796.4| Mouse DNA sequence from clone RP23-361A12 on chromosome X, complete
              sequence
          Length = 160626

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    aagacgaagacgaagaagac 233
              ||||||||||||||||||||
Sbjct: 138010 aagacgaagacgaagaagac 138029


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,056,202
Number of Sequences: 3902068
Number of extensions: 2056202
Number of successful extensions: 45597
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44978
Number of HSP's gapped (non-prelim): 617
length of query: 238
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 216
effective length of database: 17,147,199,772
effective search space: 3703795150752
effective search space used: 3703795150752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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