ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast74h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC110233.9| Mus musculus chromosome 6, clone RP23-68H1, compl... 44 0.083
2gb|BC054283.1| Xenopus laevis fumarylacetoacetate hydrolase, mRN... 38 5.1
3gb|AF222718.1| Chrysodidymus synuroideus mitochondrion, complete... 38 5.1
4emb|BX322793.7| Zebrafish DNA sequence from clone CH211-208I8 in... 38 5.1

>gb|AC110233.9| Mus musculus chromosome 6, clone RP23-68H1, complete sequence
          Length = 151295

 Score = 44.1 bits (22), Expect = 0.083
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 12    ttattaagggatcaatattatt 33
             ||||||||||||||||||||||
Sbjct: 66103 ttattaagggatcaatattatt 66082



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>gb|BC054283.1| Xenopus laevis fumarylacetoacetate hydrolase, mRNA (cDNA clone
            MGC:64529 IMAGE:6878218), complete cds
          Length = 1559

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 78   attattaactaccctacta 96
            |||||||||||||||||||
Sbjct: 1450 attattaactaccctacta 1432



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>gb|AF222718.1| Chrysodidymus synuroideus mitochondrion, complete genome
          Length = 34119

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 77   tattattaactaccctact 95
            |||||||||||||||||||
Sbjct: 8714 tattattaactaccctact 8732



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>emb|BX322793.7| Zebrafish DNA sequence from clone CH211-208I8 in linkage group 9,
              complete sequence
          Length = 192039

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      ggacaacaaacttattaag 19
              |||||||||||||||||||
Sbjct: 126900 ggacaacaaacttattaag 126882


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 826,365
Number of Sequences: 3902068
Number of extensions: 826365
Number of successful extensions: 47161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47154
Number of HSP's gapped (non-prelim): 7
length of query: 112
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 91
effective length of database: 17,151,101,840
effective search space: 1560750267440
effective search space used: 1560750267440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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