ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast74g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_632562.1| Dictyostelium discoideum hypothetical protein (... 42 0.42
2ref|XM_514078.1| PREDICTED: Pan troglodytes similar to complemen... 40 1.6
3gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 1.6
4ref|XM_569850.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 1.6
5ref|XM_569851.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 1.6
6emb|CR388049.7| Zebrafish DNA sequence from clone CH211-220A11 i... 40 1.6
7gb|AC182474.3| Pan troglodytes BAC clone CH251-134M22 from chrom... 40 1.6
8emb|AL079343.4|CNS00M8T Human chromosome 14 DNA sequence BAC R-4... 40 1.6
9dbj|AP003397.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 1.6
10gb|CP000015.1| Borrelia garinii PBi plasmid lp54, complete sequence 38 6.5
11gb|AY521413.1| Cerastium brachypodum PsbA (psbA) gene, partial c... 38 6.5
12gb|AY521412.1| Cerastium texanum PsbA (psbA) gene, partial cds; ... 38 6.5
13gb|AY521411.1| Cerastium candicans PsbA (psbA) gene, partial cds... 38 6.5
14gb|AY521410.1| Cerastium danguyi PsbA (psbA) gene, partial cds; ... 38 6.5
15gb|AY521409.1| Cerastium nutans PsbA (psbA) gene, partial cds; a... 38 6.5
16gb|AY521407.1| Cerastium floccosum PsbA (psbA) gene, partial cds... 38 6.5
17gb|DQ337249.1| Engystomops pustulosus voucher vial code LW101A 1... 38 6.5
18gb|DQ286625.1| Plasmodium falciparum isolate Mplc22-4g EMP1 vari... 38 6.5
19gb|DQ286586.1| Plasmodium falciparum isolate Mplc22-3g EMP1 vari... 38 6.5
20gb|AY144635.1| Esphalmenus sp. AMEBU8480 16S ribosomal RNA gene,... 38 6.5
21emb|AL356754.18| Human DNA sequence from clone RP11-11C5 on chro... 38 6.5
22emb|AL662944.3|OSJN00134 Oryza sativa genomic DNA, chromosome 4,... 38 6.5
23emb|BX640453.23| Zebrafish DNA sequence from clone DKEY-9L5 in l... 38 6.5
24gb|AC010665.6| Drosophila melanogaster 3L BAC RP98-23H9 (Roswell... 38 6.5
25gb|AC104980.5| Homo sapiens chromosome 8, clone RP11-281D17, com... 38 6.5
26gb|AC005525.2|AC005525 Homo sapiens chromosome 19, cosmid F22162... 38 6.5
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
29gb|AE000790.1| Borrelia burgdorferi B31 plasmid lp54, complete s... 38 6.5
30dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
31dbj|AP003293.5| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
32emb|BX908395.15| Zebrafish DNA sequence from clone DKEY-242H9 in... 38 6.5
33gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16... 38 6.5
34dbj|AP000722.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 6.5
35dbj|AP003124.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 6.5
36gb|U88867.1|BBU88867 Borrelia burgdorferi P35 antigen (p35) gene... 38 6.5
37gb|U59487.1|BBU59487 Borrelia burgdorferi P35 antigen protein ge... 38 6.5
38emb|AL159191.4|CNS01RGS Human chromosome 14 DNA sequence BAC C-2... 38 6.5
39dbj|AP004289.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 6.5 
>ref|XM_632562.1| Dictyostelium discoideum hypothetical protein (DDB0218862), partial
           mRNA
          Length = 2088

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 52  ttaaacttaaccttaattcaaaacttgga 80
           |||||| ||||||||||| ||||||||||
Sbjct: 637 ttaaacctaaccttaatttaaaacttgga 609
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>ref|XM_514078.1| PREDICTED: Pan troglodytes similar to complement factor H-related
           5; factor H-related protein 5 (LOC457605), mRNA
          Length = 1573

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 116 ttcaacacatctccaacttt 135
           ||||||||||||||||||||
Sbjct: 615 ttcaacacatctccaacttt 596
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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
               sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 115     attcaacacatctccaactt 134
               ||||||||||||||||||||
Sbjct: 2051201 attcaacacatctccaactt 2051182
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>ref|XM_569850.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNC07020) partial mRNA
          Length = 2658

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  attcaacacatctccaactt 134
            ||||||||||||||||||||
Sbjct: 2208 attcaacacatctccaactt 2189
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>ref|XM_569851.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNC07020) partial mRNA
          Length = 2528

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  attcaacacatctccaactt 134
            ||||||||||||||||||||
Sbjct: 2210 attcaacacatctccaactt 2191
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>emb|CR388049.7| Zebrafish DNA sequence from clone CH211-220A11 in linkage group 5,
             complete sequence
          Length = 201176

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    tttgaattaaagttaaactt 59
             ||||||||||||||||||||
Sbjct: 98272 tttgaattaaagttaaactt 98291
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>gb|AC182474.3| Pan troglodytes BAC clone CH251-134M22 from chromosome 1, complete
             sequence
          Length = 152000

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ttcaacacatctccaacttt 135
             ||||||||||||||||||||
Sbjct: 99972 ttcaacacatctccaacttt 99991
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>emb|AL079343.4|CNS00M8T Human chromosome 14 DNA sequence BAC R-483C6 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173480

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 51     gttaaacttaaccttaattcaaaa 74
              ||||||| ||||||||||||||||
Sbjct: 126849 gttaaacctaaccttaattcaaaa 126872
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>dbj|AP003397.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1007G5, complete
              sequences
          Length = 184643

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    tatattcaacacatctccaa 131
              ||||||||||||||||||||
Sbjct: 162221 tatattcaacacatctccaa 162240
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>gb|CP000015.1| Borrelia garinii PBi plasmid lp54, complete sequence
          Length = 55560

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 36    caattttgaattaaagtta 54
             |||||||||||||||||||
Sbjct: 44049 caattttgaattaaagtta 44031
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>gb|AY521413.1| Cerastium brachypodum PsbA (psbA) gene, partial cds; and psbA-trnH
           intergenic spacer, partial sequence; chloroplast
          Length = 196

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 43  gaattaaagttaaacttaa 61
           |||||||||||||||||||
Sbjct: 136 gaattaaagttaaacttaa 154
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>gb|AY521412.1| Cerastium texanum PsbA (psbA) gene, partial cds; and psbA-trnH
           intergenic spacer, partial sequence; chloroplast
          Length = 196

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 43  gaattaaagttaaacttaa 61
           |||||||||||||||||||
Sbjct: 136 gaattaaagttaaacttaa 154
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>gb|AY521411.1| Cerastium candicans PsbA (psbA) gene, partial cds; and psbA-trnH
           intergenic spacer, partial sequence; chloroplast
          Length = 196

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 43  gaattaaagttaaacttaa 61
           |||||||||||||||||||
Sbjct: 136 gaattaaagttaaacttaa 154
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>gb|AY521410.1| Cerastium danguyi PsbA (psbA) gene, partial cds; and psbA-trnH
           intergenic spacer, partial sequence; chloroplast
          Length = 196

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 43  gaattaaagttaaacttaa 61
           |||||||||||||||||||
Sbjct: 136 gaattaaagttaaacttaa 154
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>gb|AY521409.1| Cerastium nutans PsbA (psbA) gene, partial cds; and psbA-trnH
           intergenic spacer, partial sequence; chloroplast
          Length = 192

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 43  gaattaaagttaaacttaa 61
           |||||||||||||||||||
Sbjct: 136 gaattaaagttaaacttaa 154
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>gb|AY521407.1| Cerastium floccosum PsbA (psbA) gene, partial cds; and psbA-trnH
           intergenic spacer, partial sequence; chloroplast
          Length = 192

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 43  gaattaaagttaaacttaa 61
           |||||||||||||||||||
Sbjct: 136 gaattaaagttaaacttaa 154
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>gb|DQ337249.1| Engystomops pustulosus voucher vial code LW101A 12S ribosomal RNA
           gene, partial sequence; tRNA-Val gene, complete
           sequence; and 16S ribosomal RNA gene, partial sequence;
           mitochondrial
          Length = 2375

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 43  gaattaaagttaaacttaa 61
           |||||||||||||||||||
Sbjct: 305 gaattaaagttaaacttaa 323
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>gb|DQ286625.1| Plasmodium falciparum isolate Mplc22-4g EMP1 variant surface
           antigen (var) mRNA, partial cds
          Length = 561

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 60  aaccttaattcaaaacttg 78
           |||||||||||||||||||
Sbjct: 376 aaccttaattcaaaacttg 394
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>gb|DQ286586.1| Plasmodium falciparum isolate Mplc22-3g EMP1 variant surface
           antigen (var) mRNA, partial cds
          Length = 516

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 60  aaccttaattcaaaacttg 78
           |||||||||||||||||||
Sbjct: 352 aaccttaattcaaaacttg 370
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>gb|AY144635.1| Esphalmenus sp. AMEBU8480 16S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 486

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 47  taaagttaaacttaacctt 65
           |||||||||||||||||||
Sbjct: 135 taaagttaaacttaacctt 153
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>emb|AL356754.18| Human DNA sequence from clone RP11-11C5 on chromosome 13 Contains a 60S
              ribosomal protein L21 (RPL21) pseudogene and the 3' end of
              a novel gene, complete sequence
          Length = 169888

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 43     gaattaaagttaaacttaa 61
              |||||||||||||||||||
Sbjct: 165673 gaattaaagttaaacttaa 165691
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>emb|AL662944.3|OSJN00134 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0028I23,
              complete sequence
          Length = 148736

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 36     caattttgaattaaagtta 54
              |||||||||||||||||||
Sbjct: 125895 caattttgaattaaagtta 125877
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>emb|BX640453.23| Zebrafish DNA sequence from clone DKEY-9L5 in linkage group 12, complete
              sequence
          Length = 223071

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 52     ttaaacttaaccttaattcaaaa 74
              |||||||||||||||||| ||||
Sbjct: 204330 ttaaacttaaccttaattaaaaa 204308
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>gb|AC010665.6| Drosophila melanogaster 3L BAC RP98-23H9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 156526

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 25     aataagcgtcgcaattttgaatt 47
              ||||||| |||||||||||||||
Sbjct: 117720 aataagcatcgcaattttgaatt 117742
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>gb|AC104980.5| Homo sapiens chromosome 8, clone RP11-281D17, complete sequence
          Length = 187226

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 102   ggagggaatatatattcaa 120
             |||||||||||||||||||
Sbjct: 56931 ggagggaatatatattcaa 56913
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>gb|AC005525.2|AC005525 Homo sapiens chromosome 19, cosmid F22162 (LLNLF-179G2), complete
             sequence
          Length = 36991

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    tttgaattaaagttaaact 58
             |||||||||||||||||||
Sbjct: 10694 tttgaattaaagttaaact 10676
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 36       caattttgaattaaagtta 54
                |||||||||||||||||||
Sbjct: 20879070 caattttgaattaaagtta 20879052
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 113      atattcaacacatctccaa 131
                |||||||||||||||||||
Sbjct: 33836817 atattcaacacatctccaa 33836799



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 37      aattttgaattaaagttaa 55
               |||||||||||||||||||
Sbjct: 7485868 aattttgaattaaagttaa 7485850
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>gb|AE000790.1| Borrelia burgdorferi B31 plasmid lp54, complete sequence
          Length = 53561

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 36    caattttgaattaaagtta 54
             |||||||||||||||||||
Sbjct: 43553 caattttgaattaaagtta 43535
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>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0708G02
          Length = 168976

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    aattttgaattaaagttaa 55
             |||||||||||||||||||
Sbjct: 34660 aattttgaattaaagttaa 34642
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>dbj|AP003293.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0691E06
          Length = 166497

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 113   atattcaacacatctccaa 131
             |||||||||||||||||||
Sbjct: 75864 atattcaacacatctccaa 75846
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>emb|BX908395.15| Zebrafish DNA sequence from clone DKEY-242H9 in linkage group 18,
              complete sequence
          Length = 130348

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 37     aattttgaattaaagttaa 55
              |||||||||||||||||||
Sbjct: 115665 aattttgaattaaagttaa 115683
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>gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16 of 83 of the complete
             sequence
          Length = 302417

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 25    aataagcgtcgcaattttgaatt 47
             ||||||| |||||||||||||||
Sbjct: 64574 aataagcatcgcaattttgaatt 64596
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>dbj|AP000722.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-675M1, complete
             sequence
          Length = 177882

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    attttgaattaaagttaaa 56
             |||||||||||||||||||
Sbjct: 31398 attttgaattaaagttaaa 31380
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>dbj|AP003124.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-447G14, complete
              sequence
          Length = 177483

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 38     attttgaattaaagttaaa 56
              |||||||||||||||||||
Sbjct: 122277 attttgaattaaagttaaa 122259
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>gb|U88867.1|BBU88867 Borrelia burgdorferi P35 antigen (p35) gene, 5' flanking region
          Length = 210

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 36  caattttgaattaaagtta 54
           |||||||||||||||||||
Sbjct: 123 caattttgaattaaagtta 141
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>gb|U59487.1|BBU59487 Borrelia burgdorferi P35 antigen protein gene, and 7.5 kDa
          lipoprotein gene, complete cds
          Length = 1962

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 36 caattttgaattaaagtta 54
          |||||||||||||||||||
Sbjct: 21 caattttgaattaaagtta 39
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>emb|AL159191.4|CNS01RGS Human chromosome 14 DNA sequence BAC C-2148L10 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 120689

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 119   aacacatctccaacttttt 137
             |||||||||||||||||||
Sbjct: 75112 aacacatctccaacttttt 75130
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>dbj|AP004289.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1844F2
          Length = 151991

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 102   ggagggaatatatattcaa 120
             |||||||||||||||||||
Sbjct: 13609 ggagggaatatatattcaa 13627


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,391,602
Number of Sequences: 3902068
Number of extensions: 1391602
Number of successful extensions: 97260
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97111
Number of HSP's gapped (non-prelim): 149
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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