| Clone Name | rbast74f12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ969053.1| Hordeum vulgare mRNA for glycosyltransferase (pglcat7 gene) Length = 1523 Score = 680 bits (343), Expect = 0.0 Identities = 361/367 (98%) Strand = Plus / Minus Query: 10 gaaaactgaaagctggattgttattatttcacacttacacaaacaaatgtcttaacccca 69 ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1519 gaaaactgagagctggattgttattatttcacacttacactaacaaatgtcttaacccca 1460 Query: 70 gaccaatttggcgagcccatctgctctgacctatattacacgaaagcaatgcgcctagga 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1459 gaccaatttggcgagcccatctgctctgacctatattacacgaaagcaatgcgcctagga 1400 Query: 130 gaactcttcctaccaaaaaagggacgatgaatggggcatataattaaacttttttcttat 189 ||| ||||||||||| | |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1399 gaattcttcctaccagagaagggacgatgaatggtgcatataattaaacttttttcttat 1340 Query: 190 ctattttacaggatgatacagaacatggattcagatgtatcgtctgtgactttctgtagg 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1339 ctattttacaggatgatacagaacatggattcagatgtatcgtctgtgactttctgtagg 1280 Query: 250 gtcccaacaaatgagctgagctgccttatgttactcaagagttgagatgtcttggtacaa 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1279 gtcccaacaaatgagctgagctgccttatgttactcaagagttgagatgtcttggtacaa 1220 Query: 310 ggatgcatcagaggagactcacacagatcagaccagccgtagcagagtctgatttgccct 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1219 ggatgcatcagaggagactcacacagatcagaccagccgtagcagagtctgatttgccct 1160 Query: 370 gatttct 376 ||||||| Sbjct: 1159 gatttct 1153
>emb|AJ969056.1| Triticum aestivum mRNA for glycosyltransferase (pglcat7 gene) Length = 1660 Score = 319 bits (161), Expect = 4e-84 Identities = 211/223 (94%), Gaps = 6/223 (2%) Strand = Plus / Minus Query: 156 atgaatggggcatataattaaacttttttcttatctatttt-acaggatgatacagaaca 214 |||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 1588 atgaatggtgcatataattaaactttttt--tatctatttttacaggatgatacagaaca 1531 Query: 215 tggattcagatgtatcgtctgtgactttctgtagggtcccaacaaatgagctgagctgcc 274 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1530 tggattcagatgtatggtctgtgactttctgtagggtcccaacaaataagctgagctgcc 1471 Query: 275 ttatgttactcaagagttgagatgtcttggtacaaggatgcatcagaggagactcacaca 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1470 ttatgttactcaagagttgagatgtcttggtacaaggatgcatcagaggagactcacaca 1411 Query: 335 gatcagaccagccgtagcagagtctga-tttgccctgatttct 376 |||||| ||||||||| ||||||| ||||||||||||||| Sbjct: 1410 aatcagaggagccgtagc--agtctgattttgccctgatttct 1370
>gb|AC158616.8| Mus musculus 10 BAC RP23-227E23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 248127 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 aattaaacttttttcttatct 191 ||||||||||||||||||||| Sbjct: 48539 aattaaacttttttcttatct 48519
>gb|AC159502.12| Mus musculus 10 BAC RP23-113B7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226276 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 aattaaacttttttcttatct 191 ||||||||||||||||||||| Sbjct: 61098 aattaaacttttttcttatct 61118
>gb|AC115629.3| Mus musculus BAC clone RP23-74J16 from chromosome 5, complete sequence Length = 242126 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 aacttttttcttatctatttt 196 ||||||||||||||||||||| Sbjct: 216084 aacttttttcttatctatttt 216064
>gb|AC133478.2| Homo sapiens 3 BAC RP11-472P6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 137757 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ctgtagggtcccaacaaatga 263 ||||||||||||||||||||| Sbjct: 13922 ctgtagggtcccaacaaatga 13942
>gb|AY190936.1| Drosophila erecta clone DERF01_42_K12 (D1471) genomic sequence Length = 41352 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 atataattaaacttttttctt 187 ||||||||||||||||||||| Sbjct: 5577 atataattaaacttttttctt 5597
>dbj|AP006131.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28E04, TM0229, complete sequence Length = 95108 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 acttttttcttatctatttta 197 ||||||||||||||||||||| Sbjct: 50809 acttttttcttatctatttta 50829
>gb|AC161264.2| Mus musculus BAC clone RP23-275J22 from chromosome 9, complete sequence Length = 131422 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 agagtctgatttgccctgatttct 376 |||||||||||| ||||||||||| Sbjct: 46386 agagtctgatttcccctgatttct 46409
>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence Length = 210751 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 atataattaaacttttttct 186 |||||||||||||||||||| Sbjct: 179471 atataattaaacttttttct 179452
>ref|XM_535355.2| PREDICTED: Canis familiaris similar to NPD014 protein isoform 2 (LOC478182), mRNA Length = 1391 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 acttttttcttatctatttt 196 |||||||||||||||||||| Sbjct: 1051 acttttttcttatctatttt 1032
>gb|U00048.2| Caenorhabditis elegans cosmid C05D11, complete sequence Length = 45274 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 catcagaggagactcacaca 334 |||||||||||||||||||| Sbjct: 40902 catcagaggagactcacaca 40883
>gb|AC135231.23| Medicago truncatula clone mth2-28m10, complete sequence Length = 106771 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 aattaaacttttttcttatc 190 |||||||||||||||||||| Sbjct: 102401 aattaaacttttttcttatc 102382
>gb|AC090618.11| Homo sapiens chromosome 17, clone RP11-763E3, complete sequence Length = 195031 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ttatttcacacttacacaaa 52 |||||||||||||||||||| Sbjct: 132605 ttatttcacacttacacaaa 132624
>emb|AL606519.6| Human DNA sequence from clone RP11-339D23 on chromosome 1 Contains a novel gene, complete sequence Length = 75939 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 ttttttcttatctattttac 198 |||||||||||||||||||| Sbjct: 51608 ttttttcttatctattttac 51627
>emb|AL590101.9| Human DNA sequence from clone RP11-318L16 on chromosome 1 Contains the 3' end of a novel gene (FLJ10876), the TRAF5 gene for TNF receptor-associated factor 5, a novel gene (MGC14801), a sorting nexin 25 (SNX25) pseudogene and a actin related protein 2/3 complex, subunit 3 21kDa (ARPC3) pseudogene, complete sequence Length = 180169 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 tataattaaacttttttctt 187 |||||||||||||||||||| Sbjct: 117555 tataattaaacttttttctt 117574
>emb|AL161901.18| Human DNA sequence from clone RP11-521H3 on chromosome 13 Contains a novel gene and a eukaryotic translation initiation factor 4A, variant 1 (EIF4A1) pseudogene, complete sequence Length = 150054 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ggtacaaggatgcatcagag 322 |||||||||||||||||||| Sbjct: 11248 ggtacaaggatgcatcagag 11229
>emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 1 Length = 206606 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ttctgtagggtcccaacaaa 260 |||||||||||||||||||| Sbjct: 161040 ttctgtagggtcccaacaaa 161021
>gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, complete sequence Length = 168721 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 atataattaaacttttttct 186 |||||||||||||||||||| Sbjct: 33427 atataattaaacttttttct 33408
>emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39 Length = 197976 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ttctgtagggtcccaacaaa 260 |||||||||||||||||||| Sbjct: 106536 ttctgtagggtcccaacaaa 106517
>gb|AC160340.2| Mus musculus BAC clone RP23-436E24 from chromosome 12, complete sequence Length = 209911 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ttttcttatctattttacag 200 |||||||||||||||||||| Sbjct: 162218 ttttcttatctattttacag 162237
>gb|AC011146.10| Homo sapiens chromosome 8, clone RP11-2F15, complete sequence Length = 156951 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 cacacttacacaaacaaatg 58 |||||||||||||||||||| Sbjct: 17993 cacacttacacaaacaaatg 17974
>gb|AC092814.2| Homo sapiens chromosome 1 clone RP11-565J7, complete sequence Length = 170245 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 atataattaaacttttttct 186 |||||||||||||||||||| Sbjct: 114800 atataattaaacttttttct 114781
>gb|AC154371.2| Mus musculus BAC clone RP23-102A13 from chromosome 14, complete sequence Length = 206234 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 aacttttttcttatctattttaca 199 ||||||||||||||| |||||||| Sbjct: 187834 aacttttttcttatccattttaca 187811
>ref|NM_066013.1| Caenorhabditis elegans C05D11.13 (C05D11.13) mRNA, complete cds Length = 813 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 catcagaggagactcacaca 334 |||||||||||||||||||| Sbjct: 257 catcagaggagactcacaca 276
>emb|BX855621.15| Zebrafish DNA sequence from clone CH211-225C13, complete sequence Length = 178447 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 atttcacacttacacaaaca 54 |||||||||||||||||||| Sbjct: 28572 atttcacacttacacaaaca 28591
>gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, complete sequence Length = 111857 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 ttttttcttatctattttac 198 |||||||||||||||||||| Sbjct: 79793 ttttttcttatctattttac 79812
>gb|AC154832.2| Mus musculus BAC clone RP24-568D4 from chromosome 14, complete sequence Length = 134900 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 aacttttttcttatctattttaca 199 ||||||||||||||| |||||||| Sbjct: 22015 aacttttttcttatccattttaca 21992
>gb|AC093798.3| Homo sapiens BAC clone RP11-306N14 from 2, complete sequence Length = 233877 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tactcaagagttgagatgtc 300 |||||||||||||||||||| Sbjct: 42804 tactcaagagttgagatgtc 42823
>emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-789A21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 198714 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 ttacaggatgatacagaaca 214 |||||||||||||||||||| Sbjct: 141970 ttacaggatgatacagaaca 141951 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,856,194 Number of Sequences: 3902068 Number of extensions: 3856194 Number of successful extensions: 76568 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76516 Number of HSP's gapped (non-prelim): 50 length of query: 376 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 354 effective length of database: 17,147,199,772 effective search space: 6070108719288 effective search space used: 6070108719288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)