ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast74f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ969053.1| Hordeum vulgare mRNA for glycosyltransferase (pg... 680 0.0
2emb|AJ969056.1| Triticum aestivum mRNA for glycosyltransferase (... 319 4e-84
3gb|AC158616.8| Mus musculus 10 BAC RP23-227E23 (Roswell Park Can... 42 1.3
4gb|AC159502.12| Mus musculus 10 BAC RP23-113B7 (Roswell Park Can... 42 1.3
5gb|AC115629.3| Mus musculus BAC clone RP23-74J16 from chromosome... 42 1.3
6gb|AC133478.2| Homo sapiens 3 BAC RP11-472P6 (Roswell Park Cance... 42 1.3
7gb|AY190936.1| Drosophila erecta clone DERF01_42_K12 (D1471) gen... 42 1.3
8dbj|AP006131.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 1.3
9gb|AC161264.2| Mus musculus BAC clone RP23-275J22 from chromosom... 40 5.0
10gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, comp... 40 5.0
11ref|XM_535355.2| PREDICTED: Canis familiaris similar to NPD014 p... 40 5.0
12gb|U00048.2| Caenorhabditis elegans cosmid C05D11, complete sequ... 40 5.0
13gb|AC135231.23| Medicago truncatula clone mth2-28m10, complete s... 40 5.0
14gb|AC090618.11| Homo sapiens chromosome 17, clone RP11-763E3, co... 40 5.0
15emb|AL606519.6| Human DNA sequence from clone RP11-339D23 on chr... 40 5.0
16emb|AL590101.9| Human DNA sequence from clone RP11-318L16 on chr... 40 5.0
17emb|AL161901.18| Human DNA sequence from clone RP11-521H3 on chr... 40 5.0
18emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 5.0
19gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, com... 40 5.0
20emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosome 4, ... 40 5.0
21gb|AC160340.2| Mus musculus BAC clone RP23-436E24 from chromosom... 40 5.0
22gb|AC011146.10| Homo sapiens chromosome 8, clone RP11-2F15, comp... 40 5.0
23gb|AC092814.2| Homo sapiens chromosome 1 clone RP11-565J7, compl... 40 5.0
24gb|AC154371.2| Mus musculus BAC clone RP23-102A13 from chromosom... 40 5.0
25ref|NM_066013.1| Caenorhabditis elegans C05D11.13 (C05D11.13) mR... 40 5.0
26emb|BX855621.15| Zebrafish DNA sequence from clone CH211-225C13,... 40 5.0
27gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, comple... 40 5.0
28gb|AC154832.2| Mus musculus BAC clone RP24-568D4 from chromosome... 40 5.0
29gb|AC093798.3| Homo sapiens BAC clone RP11-306N14 from 2, comple... 40 5.0
30emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-7... 40 5.0

>emb|AJ969053.1| Hordeum vulgare mRNA for glycosyltransferase (pglcat7 gene)
          Length = 1523

 Score =  680 bits (343), Expect = 0.0
 Identities = 361/367 (98%)
 Strand = Plus / Minus

                                                                        
Query: 10   gaaaactgaaagctggattgttattatttcacacttacacaaacaaatgtcttaacccca 69
            ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1519 gaaaactgagagctggattgttattatttcacacttacactaacaaatgtcttaacccca 1460

                                                                        
Query: 70   gaccaatttggcgagcccatctgctctgacctatattacacgaaagcaatgcgcctagga 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1459 gaccaatttggcgagcccatctgctctgacctatattacacgaaagcaatgcgcctagga 1400

                                                                        
Query: 130  gaactcttcctaccaaaaaagggacgatgaatggggcatataattaaacttttttcttat 189
            ||| ||||||||||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1399 gaattcttcctaccagagaagggacgatgaatggtgcatataattaaacttttttcttat 1340

                                                                        
Query: 190  ctattttacaggatgatacagaacatggattcagatgtatcgtctgtgactttctgtagg 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1339 ctattttacaggatgatacagaacatggattcagatgtatcgtctgtgactttctgtagg 1280

                                                                        
Query: 250  gtcccaacaaatgagctgagctgccttatgttactcaagagttgagatgtcttggtacaa 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1279 gtcccaacaaatgagctgagctgccttatgttactcaagagttgagatgtcttggtacaa 1220

                                                                        
Query: 310  ggatgcatcagaggagactcacacagatcagaccagccgtagcagagtctgatttgccct 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1219 ggatgcatcagaggagactcacacagatcagaccagccgtagcagagtctgatttgccct 1160

                   
Query: 370  gatttct 376
            |||||||
Sbjct: 1159 gatttct 1153



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>emb|AJ969056.1| Triticum aestivum mRNA for glycosyltransferase (pglcat7 gene)
          Length = 1660

 Score =  319 bits (161), Expect = 4e-84
 Identities = 211/223 (94%), Gaps = 6/223 (2%)
 Strand = Plus / Minus

                                                                        
Query: 156  atgaatggggcatataattaaacttttttcttatctatttt-acaggatgatacagaaca 214
            |||||||| ||||||||||||||||||||  |||||||||| ||||||||||||||||||
Sbjct: 1588 atgaatggtgcatataattaaactttttt--tatctatttttacaggatgatacagaaca 1531

                                                                        
Query: 215  tggattcagatgtatcgtctgtgactttctgtagggtcccaacaaatgagctgagctgcc 274
            ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1530 tggattcagatgtatggtctgtgactttctgtagggtcccaacaaataagctgagctgcc 1471

                                                                        
Query: 275  ttatgttactcaagagttgagatgtcttggtacaaggatgcatcagaggagactcacaca 334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1470 ttatgttactcaagagttgagatgtcttggtacaaggatgcatcagaggagactcacaca 1411

                                                       
Query: 335  gatcagaccagccgtagcagagtctga-tttgccctgatttct 376
             ||||||  |||||||||  ||||||| |||||||||||||||
Sbjct: 1410 aatcagaggagccgtagc--agtctgattttgccctgatttct 1370



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>gb|AC158616.8| Mus musculus 10 BAC RP23-227E23 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 248127

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 171   aattaaacttttttcttatct 191
             |||||||||||||||||||||
Sbjct: 48539 aattaaacttttttcttatct 48519



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>gb|AC159502.12| Mus musculus 10 BAC RP23-113B7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 226276

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 171   aattaaacttttttcttatct 191
             |||||||||||||||||||||
Sbjct: 61098 aattaaacttttttcttatct 61118



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>gb|AC115629.3| Mus musculus BAC clone RP23-74J16 from chromosome 5, complete sequence
          Length = 242126

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 176    aacttttttcttatctatttt 196
              |||||||||||||||||||||
Sbjct: 216084 aacttttttcttatctatttt 216064



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>gb|AC133478.2| Homo sapiens 3 BAC RP11-472P6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 137757

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 243   ctgtagggtcccaacaaatga 263
             |||||||||||||||||||||
Sbjct: 13922 ctgtagggtcccaacaaatga 13942



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>gb|AY190936.1| Drosophila erecta clone DERF01_42_K12 (D1471) genomic sequence
          Length = 41352

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 167  atataattaaacttttttctt 187
            |||||||||||||||||||||
Sbjct: 5577 atataattaaacttttttctt 5597



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>dbj|AP006131.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28E04, TM0229,
             complete sequence
          Length = 95108

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 177   acttttttcttatctatttta 197
             |||||||||||||||||||||
Sbjct: 50809 acttttttcttatctatttta 50829



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>gb|AC161264.2| Mus musculus BAC clone RP23-275J22 from chromosome 9, complete sequence
          Length = 131422

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 353   agagtctgatttgccctgatttct 376
             |||||||||||| |||||||||||
Sbjct: 46386 agagtctgatttcccctgatttct 46409



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>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence
          Length = 210751

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    atataattaaacttttttct 186
              ||||||||||||||||||||
Sbjct: 179471 atataattaaacttttttct 179452



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>ref|XM_535355.2| PREDICTED: Canis familiaris similar to NPD014 protein isoform 2
            (LOC478182), mRNA
          Length = 1391

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  acttttttcttatctatttt 196
            ||||||||||||||||||||
Sbjct: 1051 acttttttcttatctatttt 1032



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>gb|U00048.2| Caenorhabditis elegans cosmid C05D11, complete sequence
          Length = 45274

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   catcagaggagactcacaca 334
             ||||||||||||||||||||
Sbjct: 40902 catcagaggagactcacaca 40883



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>gb|AC135231.23| Medicago truncatula clone mth2-28m10, complete sequence
          Length = 106771

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    aattaaacttttttcttatc 190
              ||||||||||||||||||||
Sbjct: 102401 aattaaacttttttcttatc 102382



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>gb|AC090618.11| Homo sapiens chromosome 17, clone RP11-763E3, complete sequence
          Length = 195031

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ttatttcacacttacacaaa 52
              ||||||||||||||||||||
Sbjct: 132605 ttatttcacacttacacaaa 132624



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>emb|AL606519.6| Human DNA sequence from clone RP11-339D23 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 75939

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   ttttttcttatctattttac 198
             ||||||||||||||||||||
Sbjct: 51608 ttttttcttatctattttac 51627



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>emb|AL590101.9| Human DNA sequence from clone RP11-318L16 on chromosome 1 Contains the 3'
              end of a novel gene (FLJ10876), the TRAF5 gene for TNF
              receptor-associated factor 5, a novel gene (MGC14801), a
              sorting nexin 25 (SNX25) pseudogene and a actin related
              protein 2/3 complex, subunit 3 21kDa (ARPC3) pseudogene,
              complete sequence
          Length = 180169

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    tataattaaacttttttctt 187
              ||||||||||||||||||||
Sbjct: 117555 tataattaaacttttttctt 117574



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>emb|AL161901.18| Human DNA sequence from clone RP11-521H3 on chromosome 13 Contains a
             novel gene and a eukaryotic translation initiation factor
             4A, variant 1 (EIF4A1) pseudogene, complete sequence
          Length = 150054

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   ggtacaaggatgcatcagag 322
             ||||||||||||||||||||
Sbjct: 11248 ggtacaaggatgcatcagag 11229



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>emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 1
          Length = 206606

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    ttctgtagggtcccaacaaa 260
              ||||||||||||||||||||
Sbjct: 161040 ttctgtagggtcccaacaaa 161021



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>gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, complete sequence
          Length = 168721

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   atataattaaacttttttct 186
             ||||||||||||||||||||
Sbjct: 33427 atataattaaacttttttct 33408



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>emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39
          Length = 197976

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    ttctgtagggtcccaacaaa 260
              ||||||||||||||||||||
Sbjct: 106536 ttctgtagggtcccaacaaa 106517



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>gb|AC160340.2| Mus musculus BAC clone RP23-436E24 from chromosome 12, complete sequence
          Length = 209911

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    ttttcttatctattttacag 200
              ||||||||||||||||||||
Sbjct: 162218 ttttcttatctattttacag 162237



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>gb|AC011146.10| Homo sapiens chromosome 8, clone RP11-2F15, complete sequence
          Length = 156951

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    cacacttacacaaacaaatg 58
             ||||||||||||||||||||
Sbjct: 17993 cacacttacacaaacaaatg 17974



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>gb|AC092814.2| Homo sapiens chromosome 1 clone RP11-565J7, complete sequence
          Length = 170245

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    atataattaaacttttttct 186
              ||||||||||||||||||||
Sbjct: 114800 atataattaaacttttttct 114781



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>gb|AC154371.2| Mus musculus BAC clone RP23-102A13 from chromosome 14, complete sequence
          Length = 206234

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 176    aacttttttcttatctattttaca 199
              ||||||||||||||| ||||||||
Sbjct: 187834 aacttttttcttatccattttaca 187811



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>ref|NM_066013.1| Caenorhabditis elegans C05D11.13 (C05D11.13) mRNA, complete cds
          Length = 813

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 315 catcagaggagactcacaca 334
           ||||||||||||||||||||
Sbjct: 257 catcagaggagactcacaca 276



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>emb|BX855621.15| Zebrafish DNA sequence from clone CH211-225C13, complete sequence
          Length = 178447

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    atttcacacttacacaaaca 54
             ||||||||||||||||||||
Sbjct: 28572 atttcacacttacacaaaca 28591



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>gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, complete sequence
          Length = 111857

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   ttttttcttatctattttac 198
             ||||||||||||||||||||
Sbjct: 79793 ttttttcttatctattttac 79812



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>gb|AC154832.2| Mus musculus BAC clone RP24-568D4 from chromosome 14, complete sequence
          Length = 134900

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 176   aacttttttcttatctattttaca 199
             ||||||||||||||| ||||||||
Sbjct: 22015 aacttttttcttatccattttaca 21992



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>gb|AC093798.3| Homo sapiens BAC clone RP11-306N14 from 2, complete sequence
          Length = 233877

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   tactcaagagttgagatgtc 300
             ||||||||||||||||||||
Sbjct: 42804 tactcaagagttgagatgtc 42823



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>emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-789A21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 198714

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    ttacaggatgatacagaaca 214
              ||||||||||||||||||||
Sbjct: 141970 ttacaggatgatacagaaca 141951


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,856,194
Number of Sequences: 3902068
Number of extensions: 3856194
Number of successful extensions: 76568
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76516
Number of HSP's gapped (non-prelim): 50
length of query: 376
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 354
effective length of database: 17,147,199,772
effective search space: 6070108719288
effective search space used: 6070108719288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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