>PCNA_ORYSA (P17070) Proliferating cell nuclear antigen (PCNA) (Cyclin)|
          Length = 263

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = -2

Query: 349 AYVAYIRIYLAPKIEEDKEMKA 284
           A + YIR YLAPKIEED+EMK+
Sbjct: 242 AEMGYIRFYLAPKIEEDEEMKS 263

>PCNA_MAIZE (Q43266) Proliferating cell nuclear antigen (PCNA)|
          Length = 263

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = -2

Query: 349 AYVAYIRIYLAPKIEEDKEMK 287
           A + YIR YLAPKIE+D+EMK
Sbjct: 242 AEMGYIRFYLAPKIEDDEEMK 262

>PCNA_BRANA (Q43124) Proliferating cell nuclear antigen (PCNA)|
          Length = 263

 Score = 34.3 bits (77), Expect = 0.074
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = -2

Query: 349 AYVAYIRIYLAPKIEEDKEMKA 284
           A + YIR YLAPKIEED+E KA
Sbjct: 242 AEMGYIRYYLAPKIEEDEEDKA 263

>PCNA_TOBAC (O82797) Proliferating cell nuclear antigen (PCNA)|
          Length = 264

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -2

Query: 349 AYVAYIRIYLAPKIEEDKE 293
           A + YIR YLAPKIEED+E
Sbjct: 242 AEMGYIRFYLAPKIEEDEE 260

>PCNA_PEA (O82134) Proliferating cell nuclear antigen|
          Length = 266

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = -2

Query: 349 AYVAYIRIYLAPKIEEDKE 293
           A + Y+R YLAPKIEED+E
Sbjct: 242 AEMGYVRFYLAPKIEEDEE 260

>PCNA_SOYBN (P22177) Proliferating cell nuclear antigen (PCNA) (Cyclin)|
           (Fragment)
          Length = 236

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = -2

Query: 349 AYVAYIRIYLAPKIEEDKE 293
           A + Y+R YLAPKIEED+E
Sbjct: 212 AEMGYVRFYLAPKIEEDEE 230

>PCNA_CATRO (P24314) Proliferating cell nuclear antigen (PCNA) (Cyclin)|
          Length = 268

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -2

Query: 349 AYVAYIRIYLAPKIEEDKE 293
           A + YIR YLAPKIEED E
Sbjct: 242 AEMGYIRFYLAPKIEEDDE 260

>PCNA2_ARATH (Q9ZW35) Proliferating cell nuclear antigen 2 (PCNA 2)|
          Length = 264

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -2

Query: 349 AYVAYIRIYLAPKIEEDKEMK 287
           A + YIR YLAPKIEE+++ K
Sbjct: 242 AEMGYIRYYLAPKIEEEEDTK 262

>PCNA1_DAUCA (Q00268) Proliferating cell nuclear antigen (PCNA) (Cyclin)|
          Length = 264

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -2

Query: 349 AYVAYIRIYLAPKIEEDKE 293
           A + YIR YLAPKIEE+++
Sbjct: 242 AEMGYIRFYLAPKIEEEED 260

>PCNA2_DAUCA (Q00265) Proliferating cell nuclear antigen large form (PCNA)|
           (Cyclin)
          Length = 365

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = -2

Query: 349 AYVAYIRIYLAPKIEEDKE 293
           A + YIR YLAPKIEE+ E
Sbjct: 242 AEMGYIRYYLAPKIEEEDE 260

>YBN1_SCHPO (O42885) Putative inorganic phosphate transporter C8E4.01c|
          Length = 572

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 230 GLIT--REWRQHQHLLETQACLHFLVLFDLGCQINPNV 337
           G IT  R+WR  +HLL T  C   L +   G  +N +V
Sbjct: 334 GFITYFRQWRHFKHLLGTSVCWFLLDIAFYGVNLNQSV 371

>ISPH_PSEPK (Q88Q89) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 315

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +1

Query: 31  KFPNVLA*Q*QNWCNKDQQSQIQVAKTA-----TFIDGNPWTTNSHRYRSS*NKHNTTIF 195
           +FPN+   +  + C   Q  Q  V + A       + G+P ++NS+R R    +  T  +
Sbjct: 185 RFPNIGGPRKDDICYATQNRQDAVKQLAGESDVVLVVGSPNSSNSNRLRELAERMGTPAY 244

Query: 196 LLTNNH*ANGGWFN 237
           L+        GWF+
Sbjct: 245 LIDGAEDLQRGWFD 258

>ECM29_MOUSE (Q6PDI5) Proteasome-associated protein ECM29 homolog (Ecm29)|
          Length = 1840

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 98   K*LKQQHSSMEIHGPPIVTDTEVAKTSITPPFFCLQTIIKQMEVGLITREWRQHQHLLET 277
            K L+ Q   M+  G   +       +S+ PP+  L  I+  +  GL  R W   + LL+ 
Sbjct: 1529 KALQSQSWKMKAQGAIAMASISKQTSSLVPPY--LGMILSALMQGLAGRTWAGKEELLKA 1586

Query: 278  QACL 289
             AC+
Sbjct: 1587 IACV 1590

>ISPH_PSEAE (Q9HVM7) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 314

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = +1

Query: 31  KFPNVLA*Q*QNWCNKDQQSQIQVAKTATFID-----GNPWTTNSHRYRSS*NKHNTTIF 195
           KFP +   +  + C   Q  Q  V + A   D     G+P ++NS+R R    +  T  +
Sbjct: 185 KFPQIQGPRKNDICYATQNRQDAVKELADQCDMVLVVGSPNSSNSNRLRELAERMGTPAY 244

Query: 196 LLTNNH*ANGGWFN 237
           L+        GWF+
Sbjct: 245 LIDGAEDMQRGWFD 258

>PCNA1_ARATH (Q9M7Q7) Proliferating cellular nuclear antigen 1 (PCNA 1)|
          Length = 263

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -2

Query: 349 AYVAYIRIYLAPKIEEDKE 293
           A + YIR YLAPKIEE+++
Sbjct: 242 AEMGYIRYYLAPKIEEEED 260

>PCNA_POPNI (Q9MAY3) Proliferating cell nuclear antigen (PCNA)|
          Length = 264

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 349 AYVAYIRIYLAPKIEEDK 296
           A + Y+R YLAPK+EED+
Sbjct: 242 AEMGYVRFYLAPKMEEDE 259

>ISPH_METCA (Q607E5) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 313

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +1

Query: 31  KFPNVLA*Q*QNWCNKDQQSQIQVAKTATFID-----GNPWTTNSHRYRSS*NKHNTTIF 195
           +FP +L  +  + C   Q  Q  V K A   D     G+P ++NS+R R   +K     F
Sbjct: 184 RFPKILGPRKDDICYATQNRQDAVKKLAAQCDTILVVGSPNSSNSNRLREIADKLGRKAF 243

Query: 196 LLTN 207
           L+ N
Sbjct: 244 LIDN 247

>YJEJ_ECOLI (P39279) Hypothetical protein yjeJ|
          Length = 289

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 269 LETQACLHFLVLFDLGCQINPNVGNISIS---WKHN 367
           L   + L FL L+D+ CQ N N+   + S   WKHN
Sbjct: 155 LRITSLLDFLPLYDVDCQDNGNLEYDTYSQPEWKHN 190

>ECM29_PONPY (Q5R6J0) Proteasome-associated protein ECM29 homolog (Ecm29)|
            (Fragment)
          Length = 1810

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 98   K*LKQQHSSMEIHGPPIVTDTEVAKTSITPPFFCLQTIIKQMEVGLITREWRQHQHLLET 277
            K L+ Q   M+  G   +       +S+ PP+  L  I+  +  GL  R W   + LL+ 
Sbjct: 1499 KALQSQSWKMKAQGAIAMASIAKQTSSLVPPY--LGMILTALLQGLAGRTWAGKEELLKA 1556

Query: 278  QACL 289
             AC+
Sbjct: 1557 IACV 1560

>ECM29_HUMAN (Q5VYK3) Proteasome-associated protein ECM29 homolog (Ecm29)|
          Length = 1845

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 98   K*LKQQHSSMEIHGPPIVTDTEVAKTSITPPFFCLQTIIKQMEVGLITREWRQHQHLLET 277
            K L+ Q   M+  G   +       +S+ PP+  L  I+  +  GL  R W   + LL+ 
Sbjct: 1534 KALQSQSWKMKAQGAIAMASIAKQTSSLVPPY--LGMILTALLQGLAGRTWAGKEELLKA 1591

Query: 278  QACL 289
             AC+
Sbjct: 1592 IACV 1595

>PCNA_CAEEL (O02115) Proliferating cell nuclear antigen (PCNA)|
          Length = 229

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 337 YIRIYLAPKIEEDKEM 290
           Y+R YLAPKI++D+ M
Sbjct: 213 YLRFYLAPKIDDDENM 228

>SPED_BUCAP (Q8K9T6) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase beta chain; S-adenosylmethionine
           decarboxylase alpha chain]
          Length = 268

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 155 DTEVAKTSITPPFFCLQTIIKQMEVGLITREWRQHQHLLETQACLHFL 298
           D EV+   I  P   L  +I Q+E  ++T E+R      +     HF+
Sbjct: 135 DIEVSTCGIISPLNALNYLIHQLESDIVTIEYRVRGFTRDIHGIKHFI 182

>SPED_BUCAI (P57304) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase beta chain; S-adenosylmethionine
           decarboxylase alpha chain]
          Length = 265

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 155 DTEVAKTSITPPFFCLQTIIKQMEVGLITREWRQHQHLLETQACLHFL 298
           D EV+   I  P   L  +I Q+E  ++T E+R      +     HF+
Sbjct: 136 DIEVSTCGIISPLNALNYLIHQLESDIVTIEYRVRGFTRDIHGIKHFI 183


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,879,678
Number of Sequences: 219361
Number of extensions: 1035212
Number of successful extensions: 2297
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2297
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)