ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast74d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIPK5_XENTR (Q67E00) Receptor-interacting serine/threonine-prote... 30 2.0
2POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocaps... 29 3.4
3POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocaps... 29 3.4
4POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocaps... 29 3.4
5BGLT_THEMA (Q9X108) 6-phospho-beta-glucosidase bglT (EC 3.2.1.86) 28 7.5

>RIPK5_XENTR (Q67E00) Receptor-interacting serine/threonine-protein kinase 5 (EC|
           2.7.11.1) (Dusty protein kinase) (Dusty PK)
          Length = 918

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 7   ILYFACKHAL--QSSDKVHEFPQEYKITALVATTATTYERSCGGSSSKTNLL*E 162
           ++Y  C+  L  Q  +++ E  ++YK+      T++T +R  GGS    + L E
Sbjct: 242 VVYAVCEERLSQQDEEELTEIKEKYKLPVFFIRTSSTRDRLIGGSEGVRSALYE 295



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>POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocapsid protein C;|
            Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 28   HALQSSDKVHEFPQEYKITALVATTATTYERSCGGSSSKTN 150
            H   + + V  FP    +TA +  T   Y+ SCGG S + +
Sbjct: 951  HLTVNGEDVGAFPPGKFVTAALLNTPPPYQVSCGGESDRAS 991



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>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;|
            Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 28   HALQSSDKVHEFPQEYKITALVATTATTYERSCGGSSSKTN 150
            H   + + V  FP    +TA +  T   Y+ SCGG S + +
Sbjct: 951  HLTVNGEDVGAFPPGKFVTAALLNTPPPYQVSCGGESDRAS 991



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>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;|
            Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 992

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 28   HALQSSDKVHEFPQEYKITALVATTATTYERSCGGSSSKTN 150
            H   + + V  FP    +TA +  T   Y+ SCGG S + +
Sbjct: 949  HLTVNGEDVGAFPPGKFVTAALLNTPPPYQVSCGGESDRAS 989



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>BGLT_THEMA (Q9X108) 6-phospho-beta-glucosidase bglT (EC 3.2.1.86)|
          Length = 415

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 155 YEKAVELVKQ*TKRGGAMHASSTA 226
           Y  AVE+ ++ TKRGG+M++++ A
Sbjct: 276 YRTAVEIPEELTKRGGSMYSTAAA 299


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,136,770
Number of Sequences: 219361
Number of extensions: 527872
Number of successful extensions: 1139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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