ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast74d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY662492.1| Hordeum vulgare subsp. vulgare non-specific lipid... 446 e-122
2gb|AY057932.1| Bromus inermis nonspecific lipid transfer protein... 56 7e-05
3emb|X57477.1|OCCCBI2 Rabbit mRNA for calcium channel BI-2 44 0.27
4emb|X57476.1|OCCCBI1 Rabbit mRNA for calcium channel BI-1 44 0.27
5emb|X57689.1|OCCCBI2CB Rabbit mRNA for calcium channel BI-2 (lam... 44 0.27
6emb|X57688.1|OCCCBI1CB Rabbit mRNA for calcium channel BI-1 (lam... 44 0.27
7gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 4.3
8gb|AC096672.14| Trypanosoma brucei chromosome 4 clone RPCI93-24M... 40 4.3
9gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, com... 40 4.3
10ref|XM_588833.2| PREDICTED: Bos taurus similar to CG2186-PA (LOC... 40 4.3
11gb|AC161180.3| Mus musculus chromosome 1, clone RP23-149C6, comp... 40 4.3
12ref|XM_976324.1| PREDICTED: Mus musculus RIKEN cDNA 5530401N06 g... 40 4.3
13ref|XM_975832.1| PREDICTED: Mus musculus RIKEN cDNA A030005L19 g... 40 4.3
14ref|XM_919110.2| PREDICTED: Mus musculus RIKEN cDNA 5530401N06 g... 40 4.3
15ref|XM_919025.2| PREDICTED: Mus musculus RIKEN cDNA A030005L19 g... 40 4.3
16ref|XM_896507.2| PREDICTED: Mus musculus RIKEN cDNA 5530401N06 g... 40 4.3
17ref|XM_896385.2| PREDICTED: Mus musculus RIKEN cDNA A030005L19 g... 40 4.3
18emb|AL022018.1|DMC8D8 Drosophila melanogaster cosmid clone 8D8 40 4.3
19gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell ... 40 4.3
20ref|NM_078977.2| Drosophila melanogaster toutatis CG10897-RA, tr... 40 4.3
21gb|AC104288.4| Drosophila melanogaster X BAC RP98-30G24 (Roswell... 40 4.3
22gb|AF314193.1| Drosophila melanogaster Toutatis (tou) gene, comp... 40 4.3
23gb|AF325500.1|AF325500 Antheraea yamamai transposon mariner-like... 40 4.3
24dbj|AK020696.1| Mus musculus 6 days neonate skin cDNA, RIKEN ful... 40 4.3
25gb|AC011696.4|AC011696 Drosophila melanogaster, chromosome 2R, r... 40 4.3
26gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, ... 40 4.3
27dbj|AK119747.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
28gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25... 40 4.3
29gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 o... 40 4.3
30gb|AC123676.9| Mus musculus chromosome 1, clone RP23-275F9, comp... 40 4.3
31dbj|D32003.1| Chlamydomonas reinhardtii mRNA for chloroplast Rie... 40 4.3

>gb|AY662492.1| Hordeum vulgare subsp. vulgare non-specific lipid transfer protein 6
            (Ltp6) gene, promoter and complete cds
          Length = 3257

 Score =  446 bits (225), Expect = e-122
 Identities = 228/229 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aggaccatcttatatttcgcttgtaagcatgcattacagagttccgacaaagtacacgag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3255 aggaccatcttatatttcgcttgtaagcatgcattacagagttccgacaaagtacacgag 3196

                                                                        
Query: 61   ttccctcaggagtacaagatcacagctctcgtggcaacaacggccacaacgtacgaacga 120
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3195 ttccctcgggagtacaagatcacagctctcgtggcaacaacggccacaacgtacgaacga 3136

                                                                        
Query: 121  agctgcggcggcagcagcagtaaaactaatttattatgagaaagcggtagaactagtaaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3135 agctgcggcggcagcagcagtaaaactaatttattatgagaaagcggtagaactagtaaa 3076

                                                             
Query: 181  gcagtaaactaaacgcggtggagccatgcatgcatccagtactgctaga 229
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3075 gcagtaaactaaacgcggtggagccatgcatgcatccagtactgctaga 3027



 Score =  149 bits (75), Expect = 6e-33
 Identities = 78/79 (98%)
 Strand = Plus / Minus

                                                                        
Query: 245  acgcatacagtactgctagctatagctagcagggacggggcttccacaatttatttcgct 304
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3011 acgcatacagtactgctagctatagctagcaaggacggggcttccacaatttatttcgct 2952

                               
Query: 305  ctcaccatgcaacgcttaa 323
            |||||||||||||||||||
Sbjct: 2951 ctcaccatgcaacgcttaa 2933



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>gb|AY057932.1| Bromus inermis nonspecific lipid transfer protein (BG14) mRNA,
           complete cds
          Length = 841

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 24  taagcatgcattacagagttccgacaaagtac 55
           ||||||||||||||||||||||||| ||||||
Sbjct: 739 taagcatgcattacagagttccgacgaagtac 708



 Score = 48.1 bits (24), Expect = 0.017
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 167 gtagaactagtaaagcagtaaactaaacgcggtggagccatgcatgcatcca 218
           |||||||||||||||||||||   | |||  ||||||| |||||||||||||
Sbjct: 593 gtagaactagtaaagcagtaattaatacgacgtggagctatgcatgcatcca 542



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  tcacagctctcgtggcaaca 99
           ||||||||||||||||||||
Sbjct: 677 tcacagctctcgtggcaaca 658



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>emb|X57477.1|OCCCBI2 Rabbit mRNA for calcium channel BI-2
          Length = 8405

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 119  gaagctgcggcggcagcagcag 140
            ||||||||||||||||||||||
Sbjct: 1424 gaagctgcggcggcagcagcag 1445



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>emb|X57476.1|OCCCBI1 Rabbit mRNA for calcium channel BI-1
          Length = 8820

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 119  gaagctgcggcggcagcagcag 140
            ||||||||||||||||||||||
Sbjct: 1424 gaagctgcggcggcagcagcag 1445



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>emb|X57689.1|OCCCBI2CB Rabbit mRNA for calcium channel BI-2 (lambda CBP109 and CB101)
          Length = 8405

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 119  gaagctgcggcggcagcagcag 140
            ||||||||||||||||||||||
Sbjct: 1424 gaagctgcggcggcagcagcag 1445



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>emb|X57688.1|OCCCBI1CB Rabbit mRNA for calcium channel BI-1 (lambda CBP109 and CB101)
          Length = 8820

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 119  gaagctgcggcggcagcagcag 140
            ||||||||||||||||||||||
Sbjct: 1424 gaagctgcggcggcagcagcag 1445



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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 120     aagctgcggcggcagcagca 139
               ||||||||||||||||||||
Sbjct: 1583046 aagctgcggcggcagcagca 1583027



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>gb|AC096672.14| Trypanosoma brucei chromosome 4 clone RPCI93-24M18, complete sequence
          Length = 158627

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    aagctgcggcggcagcagca 139
              ||||||||||||||||||||
Sbjct: 151241 aagctgcggcggcagcagca 151222



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>gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, complete sequence
          Length = 162238

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    agctgcggcggcagcagcag 140
              ||||||||||||||||||||
Sbjct: 132069 agctgcggcggcagcagcag 132050



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   agctgcggcggcagcagcag 140
             ||||||||||||||||||||
Sbjct: 85039 agctgcggcggcagcagcag 85020



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>ref|XM_588833.2| PREDICTED: Bos taurus similar to CG2186-PA (LOC511489), mRNA
          Length = 3255

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 121  agctgcggcggcagcagcag 140
            ||||||||||||||||||||
Sbjct: 2684 agctgcggcggcagcagcag 2703



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>gb|AC161180.3| Mus musculus chromosome 1, clone RP23-149C6, complete sequence
          Length = 215599

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    agctgcggcggcagcagcag 140
              ||||||||||||||||||||
Sbjct: 161604 agctgcggcggcagcagcag 161623



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    agctgcggcggcagcagcag 140
              ||||||||||||||||||||
Sbjct: 114575 agctgcggcggcagcagcag 114594



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   agctgcggcggcagcagcag 140
             ||||||||||||||||||||
Sbjct: 74245 agctgcggcggcagcagcag 74264



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   agctgcggcggcagcagcag 140
             ||||||||||||||||||||
Sbjct: 13941 agctgcggcggcagcagcag 13960



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>ref|XM_976324.1| PREDICTED: Mus musculus RIKEN cDNA 5530401N06 gene (5530401N06Rik),
           mRNA
          Length = 992

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 agctgcggcggcagcagcag 140
           ||||||||||||||||||||
Sbjct: 361 agctgcggcggcagcagcag 342



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>ref|XM_975832.1| PREDICTED: Mus musculus RIKEN cDNA A030005L19 gene (A030005L19Rik),
           mRNA
          Length = 806

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 agctgcggcggcagcagcag 140
           ||||||||||||||||||||
Sbjct: 301 agctgcggcggcagcagcag 282



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>ref|XM_919110.2| PREDICTED: Mus musculus RIKEN cDNA 5530401N06 gene (5530401N06Rik),
           mRNA
          Length = 992

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 agctgcggcggcagcagcag 140
           ||||||||||||||||||||
Sbjct: 361 agctgcggcggcagcagcag 342



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>ref|XM_919025.2| PREDICTED: Mus musculus RIKEN cDNA A030005L19 gene (A030005L19Rik),
           mRNA
          Length = 806

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 agctgcggcggcagcagcag 140
           ||||||||||||||||||||
Sbjct: 301 agctgcggcggcagcagcag 282



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>ref|XM_896507.2| PREDICTED: Mus musculus RIKEN cDNA 5530401N06 gene (5530401N06Rik),
           mRNA
          Length = 992

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 agctgcggcggcagcagcag 140
           ||||||||||||||||||||
Sbjct: 361 agctgcggcggcagcagcag 342



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>ref|XM_896385.2| PREDICTED: Mus musculus RIKEN cDNA A030005L19 gene (A030005L19Rik),
           mRNA
          Length = 806

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 agctgcggcggcagcagcag 140
           ||||||||||||||||||||
Sbjct: 301 agctgcggcggcagcagcag 282



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>emb|AL022018.1|DMC8D8 Drosophila melanogaster cosmid clone 8D8
          Length = 38397

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   agctgcggcggcagcagcag 140
             ||||||||||||||||||||
Sbjct: 18644 agctgcggcggcagcagcag 18625



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>gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 181360

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   agctgcggcggcagcagcag 140
             ||||||||||||||||||||
Sbjct: 15035 agctgcggcggcagcagcag 15016



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>ref|NM_078977.2| Drosophila melanogaster toutatis CG10897-RA, transcript variant A
            (tou), mRNA
          Length = 10497

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 121  agctgcggcggcagcagcag 140
            ||||||||||||||||||||
Sbjct: 1014 agctgcggcggcagcagcag 1033



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>gb|AC104288.4| Drosophila melanogaster X BAC RP98-30G24 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 164252

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   agctgcggcggcagcagcag 140
             ||||||||||||||||||||
Sbjct: 74550 agctgcggcggcagcagcag 74531



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>gb|AF314193.1| Drosophila melanogaster Toutatis (tou) gene, complete cds
          Length = 39574

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   agctgcggcggcagcagcag 140
             ||||||||||||||||||||
Sbjct: 26639 agctgcggcggcagcagcag 26658



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>gb|AF325500.1|AF325500 Antheraea yamamai transposon mariner-like element transposase gene,
            partial cds; and fibroin gene, complete cds
          Length = 9921

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 121  agctgcggcggcagcagcag 140
            ||||||||||||||||||||
Sbjct: 9063 agctgcggcggcagcagcag 9082



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 121  agctgcggcggcagcagcag 140
            ||||||||||||||||||||
Sbjct: 7845 agctgcggcggcagcagcag 7864



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>dbj|AK020696.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:A030005L19 product:unclassifiable, full
           insert sequence
          Length = 808

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 agctgcggcggcagcagcag 140
           ||||||||||||||||||||
Sbjct: 302 agctgcggcggcagcagcag 283



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>gb|AC011696.4|AC011696 Drosophila melanogaster, chromosome 2R, region 48A-48C, BAC clone
            BACR35F01, complete sequence
          Length = 170869

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  agctgcggcggcagcagcag 140
            ||||||||||||||||||||
Sbjct: 7046 agctgcggcggcagcagcag 7027



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>gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, region 48A-48B, BAC clone
             BACR38D12, complete sequence
          Length = 171831

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   agctgcggcggcagcagcag 140
             ||||||||||||||||||||
Sbjct: 47365 agctgcggcggcagcagcag 47346



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>dbj|AK119747.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-D09, full
           insert sequence
          Length = 3450

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 agctgcggcggcagcagcag 140
           ||||||||||||||||||||
Sbjct: 921 agctgcggcggcagcagcag 940



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>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete
              sequence
          Length = 261690

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    agctgcggcggcagcagcag 140
              ||||||||||||||||||||
Sbjct: 125538 agctgcggcggcagcagcag 125519



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>gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 of 74 of the complete
              sequence
          Length = 308311

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    agctgcggcggcagcagcag 140
              ||||||||||||||||||||
Sbjct: 185870 agctgcggcggcagcagcag 185851



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>gb|AC123676.9| Mus musculus chromosome 1, clone RP23-275F9, complete sequence
          Length = 169201

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   agctgcggcggcagcagcag 140
             ||||||||||||||||||||
Sbjct: 60006 agctgcggcggcagcagcag 59987



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>dbj|D32003.1| Chlamydomonas reinhardtii mRNA for chloroplast Rieske Fe-S
           precursor protein, complete cds
          Length = 1436

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 agctgcggcggcagcagcag 140
           ||||||||||||||||||||
Sbjct: 821 agctgcggcggcagcagcag 840


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,339,124
Number of Sequences: 3902068
Number of extensions: 2339124
Number of successful extensions: 50781
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50683
Number of HSP's gapped (non-prelim): 97
length of query: 323
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 301
effective length of database: 17,147,199,772
effective search space: 5161307131372
effective search space used: 5161307131372
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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