>gb|AY057118.1| Triticum aestivum cold acclimation protein WCOR413-like protein
           beta form mRNA, complete cds
          Length = 993

 Score =  327 bits (165), Expect = 1e-86
 Identities = 239/263 (90%), Gaps = 8/263 (3%)
 Strand = Plus / Minus

                                                                       
Query: 41  atcaaggaaacaaagacctgacaccaaaactacaacaaatcgaaacatgtccatcagaa- 99
           ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| 
Sbjct: 888 atcaaggaaacaaagacctcataccagaactacaacaaatcgaaacatgtccatcagaaa 829

                                                                       
Query: 100 ggtacaagcgcgcagagttcatcgactccgga-------taccgaatcaccatcgaaaag 152
           ||||||| || ||| ||||||||| |||||||       |||| ||||||||||||||  
Sbjct: 828 ggtacaaacgtgcacagttcatcggctccggacgagcaataccaaatcaccatcgaaagc 769

                                                                       
Query: 153 gtctacacgatgaatccccaaacatcgaacagaactgcacaaaccaatcaatggccacac 212
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 768 gtctacacgatgaatccccaaacagcgaacagaactgcacaagccaatcaatggccacac 709

                                                                       
Query: 213 tgatagcagtagatgtcctacaggaaccacagcaccaggacccagactgggtagacgaag 272
            |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct: 708 cgatagcagtagatgtcctacaggagccagagcaccaggacccagactgggtaaacgaag 649

                                  
Query: 273 agcaggacgatgccgatggtgtt 295
           |||||||||||||||||||||||
Sbjct: 648 agcaggacgatgccgatggtgtt 626



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 1   aacaatgatgatgtttttattgatggtcctgtacacacggatcaaggaaacaaagac 57
           |||| |||||||||||||||||||  |  ||||| |||  |||||||||||||||||
Sbjct: 962 aacagtgatgatgtttttattgataattatgtacccacaaatcaaggaaacaaagac 906

>gb|U73216.1|TAU73216 Triticum aestivum cold acclimation protein WCOR413 (Wcor413) mRNA,
           complete cds
          Length = 896

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                       
Query: 230 ctacaggaaccacagcaccaggacccagactgggtagacgaagagcaggacgatgccgat 289
           ||||||||||||||  || | | ||||||| ||||||| |||||| |||| |||||||||
Sbjct: 696 ctacaggaaccacatgacgacggcccagaccgggtagatgaagaggaggaggatgccgat 637

                 
Query: 290 ggtgtt 295
           ||||||
Sbjct: 636 ggtgtt 631

>gb|BT017742.1| Zea mays clone EL01N0449E04.c mRNA sequence
          Length = 1064

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 253 cccagactgggtagacgaagagcaggacgatgccgatgg 291
           ||||||| ||||||| ||||||||||| |||||||||||
Sbjct: 713 cccagacagggtagatgaagagcaggaggatgccgatgg 675

>gb|AY181208.1| Zea mays cold acclimation protein COR413-PM1 mRNA, complete cds
          Length = 1126

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 253 cccagactgggtagacgaagagcaggacgatgccgatgg 291
           ||||||| ||||||| ||||||||||| |||||||||||
Sbjct: 685 cccagacagggtagatgaagagcaggaggatgccgatgg 647

>gb|AY106041.1| Zea mays PCO103483 mRNA sequence
          Length = 1220

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 253 cccagactgggtagacgaagagcaggacgatgccgatgg 291
           ||||||| ||||||| ||||||||||| |||||||||||
Sbjct: 873 cccagacagggtagatgaagagcaggaggatgccgatgg 835

>gb|AC027506.12| Homo sapiens chromosome 18, clone RP11-762J3, complete sequence
          Length = 189781

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 54    agacctgacaccaaaactacaac 76
             |||||||||||||||||||||||
Sbjct: 18044 agacctgacaccaaaactacaac 18066

>gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, complete sequence
          Length = 212827

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 48    aaacaaagacctgacaccaaaa 69
             ||||||||||||||||||||||
Sbjct: 20577 aaacaaagacctgacaccaaaa 20556

>gb|AC102196.7| Mus musculus chromosome 3, clone RP24-445M20, complete sequence
          Length = 166532

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 48    aaacaaagacctgacaccaaaa 69
             ||||||||||||||||||||||
Sbjct: 45002 aaacaaagacctgacaccaaaa 45023

>emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chromosome 12, complete
             sequence
          Length = 209619

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 230   ctacaggaaccacagcaccag 250
             |||||||||||||||||||||
Sbjct: 22753 ctacaggaaccacagcaccag 22733

>gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosome 12, complete
             sequence
          Length = 209280

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 230   ctacaggaaccacagcaccag 250
             |||||||||||||||||||||
Sbjct: 92501 ctacaggaaccacagcaccag 92481

>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 266     gacgaagagcaggacgatgccgat 289
               ||||||||||| ||||||||||||
Sbjct: 1930168 gacgaagagcatgacgatgccgat 1930145

>gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene cluster, complete
             sequence
          Length = 99318

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   gcacaaaccaatcaatggcc 208
             ||||||||||||||||||||
Sbjct: 81145 gcacaaaccaatcaatggcc 81164

>gb|AC008761.8| Homo sapiens chromosome 19 clone CTD-3149D2, complete sequence
          Length = 226170

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 3     caatgatgatgtttttattgatgg 26
             ||||||||||||||||||| ||||
Sbjct: 92347 caatgatgatgtttttattaatgg 92324

>gb|AC011132.15| Homo sapiens chromosome 8, clone RP11-360M9, complete sequence
          Length = 216334

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    caaggaaacaaagacctgac 62
             ||||||||||||||||||||
Sbjct: 92242 caaggaaacaaagacctgac 92223

>gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, complete sequence
          Length = 247769

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 44   aaggaaacaaagacctgaca 63
            ||||||||||||||||||||
Sbjct: 1464 aaggaaacaaagacctgaca 1445

>gb|AC154450.3| Mus musculus BAC clone RP24-169J2 from chromosome 12, complete sequence
          Length = 168477

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     caatgatgatgtttttattgatgg 26
             |||||||||| |||||||||||||
Sbjct: 96925 caatgatgatatttttattgatgg 96948

>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence
          Length = 202543

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     aaggaaacaaagacctgaca 63
              ||||||||||||||||||||
Sbjct: 195672 aaggaaacaaagacctgaca 195653

>gb|AC078929.27| Homo sapiens 12 BAC RP11-797M17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 107895

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   caccaggacccagactgggt 264
             ||||||||||||||||||||
Sbjct: 35349 caccaggacccagactgggt 35368

>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 232     acaggaaccacagcaccagg 251
               ||||||||||||||||||||
Sbjct: 1645209 acaggaaccacagcaccagg 1645190

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 267     acgaagagcaggacgatgccgatg 290
               |||||||||||| |||||||||||
Sbjct: 2496734 acgaagagcaggccgatgccgatg 2496711


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,382,126
Number of Sequences: 3902068
Number of extensions: 2382126
Number of successful extensions: 46717
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46641
Number of HSP's gapped (non-prelim): 75
length of query: 295
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 273
effective length of database: 17,147,199,772
effective search space: 4681185537756
effective search space used: 4681185537756
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)