ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast74a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY111472.1| Zea mays CL9710_1 mRNA sequence 64 3e-07
2ref|NM_197282.1| Oryza sativa (japonica cultivar-group) unknown ... 48 0.016
3gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 gen... 48 0.016
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.016
5dbj|AK103246.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.016
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.016
7gb|AC007822.4|AC007822 Drosophila melanogaster, chromosome 3R, r... 44 0.24
8gb|AC007770.5|AC007770 Drosophila melanogaster, chromosome 3R, r... 44 0.24
9gb|AE003687.3| Drosophila melanogaster chromosome 3R, section 25... 44 0.24
10ref|XM_536106.2| PREDICTED: Canis familiaris similar to solute c... 42 0.96
11gb|AC144792.3| Mus musculus BAC clone RP24-501M24 from chromosom... 42 0.96
12emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, ... 42 0.96
13emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BA... 42 0.96
14emb|CR356231.12| Zebrafish DNA sequence from clone CH211-232N7, ... 42 0.96
15gb|AC164703.3| Mus musculus BAC clone RP23-266K19 from chromosom... 40 3.8
16gb|AC101982.9| Mus musculus chromosome 3, clone RP24-346F13, com... 40 3.8
17gb|AC166813.4| Mus musculus chromosome 3, clone RP23-404H11, com... 40 3.8
18gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete... 40 3.8
19gb|AC125538.4| Mus musculus BAC clone RP24-178B2 from chromosome... 40 3.8
20gb|AC125065.3| Mus musculus BAC clone RP23-430G6 from chromosome... 40 3.8
21gb|AC104863.12| Mus musculus chromosome 6, clone RP23-109C11, co... 40 3.8
22emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chro... 40 3.8
23gb|AC013562.6| Homo sapiens chromosome 8, clone RP11-313C15, com... 40 3.8
24gb|AC090735.5| Homo sapiens chromosome 8, clone RP11-1145L24, co... 40 3.8
25gb|AC009392.6| Drosophila melanogaster, chromosome 2L, region 23... 40 3.8
26gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome... 40 3.8
27gb|AC157948.5| Mus musculus BAC clone RP23-197K17 from chromosom... 40 3.8
28dbj|AB032573.3| Homo sapiens gene for alpha1,6 fucosyltransferas... 40 3.8
29gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, r... 40 3.8
30emb|AL355840.2|CNS05TCV Human chromosome 14 DNA sequence BAC R-3... 40 3.8
31gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10... 40 3.8
32gb|AC149283.2| Mus musculus BAC clone RP23-233O21 from 7, comple... 40 3.8

>gb|AY111472.1| Zea mays CL9710_1 mRNA sequence
          Length = 1223

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 237 ttcatgaggttctcttgggaggagacatgttttgcaggagtctggttgttgt 288
           ||||||| | |||||||||||||||||| || |||||||||||||| |||||
Sbjct: 673 ttcatgaagctctcttgggaggagacatattctgcaggagtctggtagttgt 724



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>ref|NM_197282.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBb0091N21.32), mRNA
          Length = 1184

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 237 ttcatgaggttctcttgggaggagacatgttttgcaggagtctggttgttgt 288
           ||||||| | |||| ||||||||||||| |||||||| ||||  ||||||||
Sbjct: 880 ttcatgaagctctcctgggaggagacatattttgcagaagtcgagttgttgt 829



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>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete
             sequence
          Length = 151991

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 237   ttcatgaggttctcttgggaggagacatgttttgcaggagtctggttgttgt 288
             ||||||| | |||| ||||||||||||| |||||||| ||||  ||||||||
Sbjct: 69552 ttcatgaagctctcctgggaggagacatattttgcagaagtcgagttgttgt 69603



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                    
Query: 237      ttcatgaggttctcttgggaggagacatgttttgcaggagtctggttgttgt 288
                ||||||| | |||| ||||||||||||| |||||||| ||||  ||||||||
Sbjct: 19009112 ttcatgaagctctcctgggaggagacatattttgcagaagtcgagttgttgt 19009061



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>dbj|AK103246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123K10, full
           insert sequence
          Length = 686

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 237 ttcatgaggttctcttgggaggagacatgttttgcaggagtctggttgttgt 288
           ||||||| | |||| ||||||||||||| |||||||| ||||  ||||||||
Sbjct: 580 ttcatgaagctctcctgggaggagacatattttgcagaagtcgagttgttgt 529



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                    
Query: 237      ttcatgaggttctcttgggaggagacatgttttgcaggagtctggttgttgt 288
                ||||||| | |||| ||||||||||||| |||||||| ||||  ||||||||
Sbjct: 19020366 ttcatgaagctctcctgggaggagacatattttgcagaagtcgagttgttgt 19020315



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>gb|AC007822.4|AC007822 Drosophila melanogaster, chromosome 3R, region 86C-86C, BAC clone
             BACR02E04, complete sequence
          Length = 157607

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 79    cagaagaggggctaaaaataag 100
             ||||||||||||||||||||||
Sbjct: 35454 cagaagaggggctaaaaataag 35433



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>gb|AC007770.5|AC007770 Drosophila melanogaster, chromosome 3R, region 86C-86C, BAC clone
              BACR03J13, complete sequence
          Length = 179260

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 79     cagaagaggggctaaaaataag 100
              ||||||||||||||||||||||
Sbjct: 163238 cagaagaggggctaaaaataag 163217



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>gb|AE003687.3| Drosophila melanogaster chromosome 3R, section 25 of 118 of the complete
              sequence
          Length = 260168

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 79     cagaagaggggctaaaaataag 100
              ||||||||||||||||||||||
Sbjct: 216414 cagaagaggggctaaaaataag 216393



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>ref|XM_536106.2| PREDICTED: Canis familiaris similar to solute carrier family 26,
            member 9 isoform a (LOC478948), mRNA
          Length = 2476

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 270  gcaggagtctggttgttgttg 290
            |||||||||||||||||||||
Sbjct: 1950 gcaggagtctggttgttgttg 1930



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>gb|AC144792.3| Mus musculus BAC clone RP24-501M24 from chromosome 19, complete sequence
          Length = 164766

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 68     aagtcggagaacagaagaggg 88
              |||||||||||||||||||||
Sbjct: 100347 aagtcggagaacagaagaggg 100327



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>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34
          Length = 196107

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 110   atcaacatggactcatggaga 130
             |||||||||||||||||||||
Sbjct: 44455 atcaacatggactcatggaga 44435



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>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project)
          Length = 137519

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 110   atcaacatggactcatggaga 130
             |||||||||||||||||||||
Sbjct: 39923 atcaacatggactcatggaga 39903



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>emb|CR356231.12| Zebrafish DNA sequence from clone CH211-232N7, complete sequence
          Length = 166203

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 92     aaaaataagcaactcatgatc 112
              |||||||||||||||||||||
Sbjct: 122212 aaaaataagcaactcatgatc 122232



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>gb|AC164703.3| Mus musculus BAC clone RP23-266K19 from chromosome 7, complete sequence
          Length = 238433

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    cttgggaggagacatgtttt 269
              ||||||||||||||||||||
Sbjct: 106030 cttgggaggagacatgtttt 106011



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>gb|AC101982.9| Mus musculus chromosome 3, clone RP24-346F13, complete sequence
          Length = 162227

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    ttctatttcatgagtataag 179
              ||||||||||||||||||||
Sbjct: 123937 ttctatttcatgagtataag 123918



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>gb|AC166813.4| Mus musculus chromosome 3, clone RP23-404H11, complete sequence
          Length = 193254

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    ttctatttcatgagtataag 179
              ||||||||||||||||||||
Sbjct: 136827 ttctatttcatgagtataag 136846



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>gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete sequence
          Length = 164920

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    aagacccaagacggtgttcc 196
              ||||||||||||||||||||
Sbjct: 156931 aagacccaagacggtgttcc 156950



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>gb|AC125538.4| Mus musculus BAC clone RP24-178B2 from chromosome 15, complete sequence
          Length = 169576

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   catttctatttcatgagtat 176
             ||||||||||||||||||||
Sbjct: 97186 catttctatttcatgagtat 97205



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>gb|AC125065.3| Mus musculus BAC clone RP23-430G6 from chromosome 5, complete sequence
          Length = 205734

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      aaagccagacatagaagttc 28
              ||||||||||||||||||||
Sbjct: 142345 aaagccagacatagaagttc 142326



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>gb|AC104863.12| Mus musculus chromosome 6, clone RP23-109C11, complete sequence
          Length = 198321

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 152   tatagcatttctatttcatgagta 175
             |||||||||||| |||||||||||
Sbjct: 79319 tatagcatttctttttcatgagta 79296



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>emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chromosome 11 Contains the
             Elac2 gene for elaC homolog 2 (E. coli), a novel gene, a
             peroxiredoxin 6 (Prdx6) pseudogene, a novel gene
             (1700086D15Rik), a novel pseudogene, and two CpG islands,
             complete sequence
          Length = 196566

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 77    aacagaagaggggctaaaaataag 100
             ||||||||||||||| ||||||||
Sbjct: 41036 aacagaagaggggctgaaaataag 41059



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>gb|AC013562.6| Homo sapiens chromosome 8, clone RP11-313C15, complete sequence
          Length = 188755

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    ttgggaggagacatgttttg 270
              ||||||||||||||||||||
Sbjct: 159964 ttgggaggagacatgttttg 159945



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>gb|AC090735.5| Homo sapiens chromosome 8, clone RP11-1145L24, complete sequence
          Length = 149089

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    ttgggaggagacatgttttg 270
              ||||||||||||||||||||
Sbjct: 101735 ttgggaggagacatgttttg 101754



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>gb|AC009392.6| Drosophila melanogaster, chromosome 2L, region 23A-23E, BAC clone
              BACR42J13, complete sequence
          Length = 179125

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    aagacccaagacggtgttcc 196
              ||||||||||||||||||||
Sbjct: 171182 aagacccaagacggtgttcc 171163



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>gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome 5, complete sequence
          Length = 222180

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      aaagccagacatagaagttc 28
              ||||||||||||||||||||
Sbjct: 172234 aaagccagacatagaagttc 172253



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>gb|AC157948.5| Mus musculus BAC clone RP23-197K17 from chromosome 7, complete sequence
          Length = 201846

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    cttgggaggagacatgtttt 269
              ||||||||||||||||||||
Sbjct: 185228 cttgggaggagacatgtttt 185209



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>dbj|AB032573.3| Homo sapiens gene for alpha1,6 fucosyltransferase, partial cds
          Length = 6911

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   gctaaaaataagcaactcat 108
            ||||||||||||||||||||
Sbjct: 3191 gctaaaaataagcaactcat 3210



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>gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, region 23C1-23C5, P1 clones
              DS02190 and DS00906, complete sequence
          Length = 163403

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    aagacccaagacggtgttcc 196
              ||||||||||||||||||||
Sbjct: 135113 aagacccaagacggtgttcc 135132



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>emb|AL355840.2|CNS05TCV Human chromosome 14 DNA sequence BAC R-382E15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 179937

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    gctaaaaataagcaactcat 108
             ||||||||||||||||||||
Sbjct: 78534 gctaaaaataagcaactcat 78553



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>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete
             sequence
          Length = 314957

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   aagacccaagacggtgttcc 196
             ||||||||||||||||||||
Sbjct: 65585 aagacccaagacggtgttcc 65566



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>gb|AC149283.2| Mus musculus BAC clone RP23-233O21 from 7, complete sequence
          Length = 223763

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   cttgggaggagacatgtttt 269
             ||||||||||||||||||||
Sbjct: 15067 cttgggaggagacatgtttt 15086


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,541,143
Number of Sequences: 3902068
Number of extensions: 2541143
Number of successful extensions: 42575
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42520
Number of HSP's gapped (non-prelim): 55
length of query: 291
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 269
effective length of database: 17,147,199,772
effective search space: 4612596738668
effective search space used: 4612596738668
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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