| Clone Name | rbast74a01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY111472.1| Zea mays CL9710_1 mRNA sequence Length = 1223 Score = 63.9 bits (32), Expect = 3e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 237 ttcatgaggttctcttgggaggagacatgttttgcaggagtctggttgttgt 288 ||||||| | |||||||||||||||||| || |||||||||||||| ||||| Sbjct: 673 ttcatgaagctctcttgggaggagacatattctgcaggagtctggtagttgt 724
>ref|NM_197282.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0091N21.32), mRNA Length = 1184 Score = 48.1 bits (24), Expect = 0.016 Identities = 45/52 (86%) Strand = Plus / Minus Query: 237 ttcatgaggttctcttgggaggagacatgttttgcaggagtctggttgttgt 288 ||||||| | |||| ||||||||||||| |||||||| |||| |||||||| Sbjct: 880 ttcatgaagctctcctgggaggagacatattttgcagaagtcgagttgttgt 829
>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete sequence Length = 151991 Score = 48.1 bits (24), Expect = 0.016 Identities = 45/52 (86%) Strand = Plus / Plus Query: 237 ttcatgaggttctcttgggaggagacatgttttgcaggagtctggttgttgt 288 ||||||| | |||| ||||||||||||| |||||||| |||| |||||||| Sbjct: 69552 ttcatgaagctctcctgggaggagacatattttgcagaagtcgagttgttgt 69603
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.016 Identities = 45/52 (86%) Strand = Plus / Minus Query: 237 ttcatgaggttctcttgggaggagacatgttttgcaggagtctggttgttgt 288 ||||||| | |||| ||||||||||||| |||||||| |||| |||||||| Sbjct: 19009112 ttcatgaagctctcctgggaggagacatattttgcagaagtcgagttgttgt 19009061
>dbj|AK103246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123K10, full insert sequence Length = 686 Score = 48.1 bits (24), Expect = 0.016 Identities = 45/52 (86%) Strand = Plus / Minus Query: 237 ttcatgaggttctcttgggaggagacatgttttgcaggagtctggttgttgt 288 ||||||| | |||| ||||||||||||| |||||||| |||| |||||||| Sbjct: 580 ttcatgaagctctcctgggaggagacatattttgcagaagtcgagttgttgt 529
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.016 Identities = 45/52 (86%) Strand = Plus / Minus Query: 237 ttcatgaggttctcttgggaggagacatgttttgcaggagtctggttgttgt 288 ||||||| | |||| ||||||||||||| |||||||| |||| |||||||| Sbjct: 19020366 ttcatgaagctctcctgggaggagacatattttgcagaagtcgagttgttgt 19020315
>gb|AC007822.4|AC007822 Drosophila melanogaster, chromosome 3R, region 86C-86C, BAC clone BACR02E04, complete sequence Length = 157607 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 79 cagaagaggggctaaaaataag 100 |||||||||||||||||||||| Sbjct: 35454 cagaagaggggctaaaaataag 35433
>gb|AC007770.5|AC007770 Drosophila melanogaster, chromosome 3R, region 86C-86C, BAC clone BACR03J13, complete sequence Length = 179260 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 79 cagaagaggggctaaaaataag 100 |||||||||||||||||||||| Sbjct: 163238 cagaagaggggctaaaaataag 163217
>gb|AE003687.3| Drosophila melanogaster chromosome 3R, section 25 of 118 of the complete sequence Length = 260168 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 79 cagaagaggggctaaaaataag 100 |||||||||||||||||||||| Sbjct: 216414 cagaagaggggctaaaaataag 216393
>ref|XM_536106.2| PREDICTED: Canis familiaris similar to solute carrier family 26, member 9 isoform a (LOC478948), mRNA Length = 2476 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 gcaggagtctggttgttgttg 290 ||||||||||||||||||||| Sbjct: 1950 gcaggagtctggttgttgttg 1930
>gb|AC144792.3| Mus musculus BAC clone RP24-501M24 from chromosome 19, complete sequence Length = 164766 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 aagtcggagaacagaagaggg 88 ||||||||||||||||||||| Sbjct: 100347 aagtcggagaacagaagaggg 100327
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34 Length = 196107 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 atcaacatggactcatggaga 130 ||||||||||||||||||||| Sbjct: 44455 atcaacatggactcatggaga 44435
>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project) Length = 137519 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 atcaacatggactcatggaga 130 ||||||||||||||||||||| Sbjct: 39923 atcaacatggactcatggaga 39903
>emb|CR356231.12| Zebrafish DNA sequence from clone CH211-232N7, complete sequence Length = 166203 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 aaaaataagcaactcatgatc 112 ||||||||||||||||||||| Sbjct: 122212 aaaaataagcaactcatgatc 122232
>gb|AC164703.3| Mus musculus BAC clone RP23-266K19 from chromosome 7, complete sequence Length = 238433 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttgggaggagacatgtttt 269 |||||||||||||||||||| Sbjct: 106030 cttgggaggagacatgtttt 106011
>gb|AC101982.9| Mus musculus chromosome 3, clone RP24-346F13, complete sequence Length = 162227 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ttctatttcatgagtataag 179 |||||||||||||||||||| Sbjct: 123937 ttctatttcatgagtataag 123918
>gb|AC166813.4| Mus musculus chromosome 3, clone RP23-404H11, complete sequence Length = 193254 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ttctatttcatgagtataag 179 |||||||||||||||||||| Sbjct: 136827 ttctatttcatgagtataag 136846
>gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete sequence Length = 164920 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagacccaagacggtgttcc 196 |||||||||||||||||||| Sbjct: 156931 aagacccaagacggtgttcc 156950
>gb|AC125538.4| Mus musculus BAC clone RP24-178B2 from chromosome 15, complete sequence Length = 169576 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 catttctatttcatgagtat 176 |||||||||||||||||||| Sbjct: 97186 catttctatttcatgagtat 97205
>gb|AC125065.3| Mus musculus BAC clone RP23-430G6 from chromosome 5, complete sequence Length = 205734 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aaagccagacatagaagttc 28 |||||||||||||||||||| Sbjct: 142345 aaagccagacatagaagttc 142326
>gb|AC104863.12| Mus musculus chromosome 6, clone RP23-109C11, complete sequence Length = 198321 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 tatagcatttctatttcatgagta 175 |||||||||||| ||||||||||| Sbjct: 79319 tatagcatttctttttcatgagta 79296
>emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chromosome 11 Contains the Elac2 gene for elaC homolog 2 (E. coli), a novel gene, a peroxiredoxin 6 (Prdx6) pseudogene, a novel gene (1700086D15Rik), a novel pseudogene, and two CpG islands, complete sequence Length = 196566 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 aacagaagaggggctaaaaataag 100 ||||||||||||||| |||||||| Sbjct: 41036 aacagaagaggggctgaaaataag 41059
>gb|AC013562.6| Homo sapiens chromosome 8, clone RP11-313C15, complete sequence Length = 188755 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ttgggaggagacatgttttg 270 |||||||||||||||||||| Sbjct: 159964 ttgggaggagacatgttttg 159945
>gb|AC090735.5| Homo sapiens chromosome 8, clone RP11-1145L24, complete sequence Length = 149089 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ttgggaggagacatgttttg 270 |||||||||||||||||||| Sbjct: 101735 ttgggaggagacatgttttg 101754
>gb|AC009392.6| Drosophila melanogaster, chromosome 2L, region 23A-23E, BAC clone BACR42J13, complete sequence Length = 179125 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 aagacccaagacggtgttcc 196 |||||||||||||||||||| Sbjct: 171182 aagacccaagacggtgttcc 171163
>gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome 5, complete sequence Length = 222180 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 aaagccagacatagaagttc 28 |||||||||||||||||||| Sbjct: 172234 aaagccagacatagaagttc 172253
>gb|AC157948.5| Mus musculus BAC clone RP23-197K17 from chromosome 7, complete sequence Length = 201846 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttgggaggagacatgtttt 269 |||||||||||||||||||| Sbjct: 185228 cttgggaggagacatgtttt 185209
>dbj|AB032573.3| Homo sapiens gene for alpha1,6 fucosyltransferase, partial cds Length = 6911 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gctaaaaataagcaactcat 108 |||||||||||||||||||| Sbjct: 3191 gctaaaaataagcaactcat 3210
>gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, region 23C1-23C5, P1 clones DS02190 and DS00906, complete sequence Length = 163403 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagacccaagacggtgttcc 196 |||||||||||||||||||| Sbjct: 135113 aagacccaagacggtgttcc 135132
>emb|AL355840.2|CNS05TCV Human chromosome 14 DNA sequence BAC R-382E15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 179937 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gctaaaaataagcaactcat 108 |||||||||||||||||||| Sbjct: 78534 gctaaaaataagcaactcat 78553
>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete sequence Length = 314957 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 aagacccaagacggtgttcc 196 |||||||||||||||||||| Sbjct: 65585 aagacccaagacggtgttcc 65566
>gb|AC149283.2| Mus musculus BAC clone RP23-233O21 from 7, complete sequence Length = 223763 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cttgggaggagacatgtttt 269 |||||||||||||||||||| Sbjct: 15067 cttgggaggagacatgtttt 15086 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,541,143 Number of Sequences: 3902068 Number of extensions: 2541143 Number of successful extensions: 42575 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42520 Number of HSP's gapped (non-prelim): 55 length of query: 291 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 269 effective length of database: 17,147,199,772 effective search space: 4612596738668 effective search space used: 4612596738668 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)