ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast73h06 |
|---|---|
| Clone Library Name | barley_pub |
>KI18A_HUMAN (Q8NI77) Kinesin family member 18A| Length = 898 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +1 Query: 244 TIAHLAAVQHVHCRPSSTNTYHLKVIICHRHRRHFLPDPVQLQH 375 T L VQ + C SS T +K+ R RR +P P++ QH Sbjct: 637 TFPQLGPVQPIPCCSSSGGTNLVKIPTEKRTRRKLMPSPLKGQH 680
>KI18A_MOUSE (Q91WD7) Kinesin family member 18A| Length = 886 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +1 Query: 244 TIAHLAAVQHVHCRPSSTNTYHLKVIICHRHRRHFLPDPVQLQH 375 T L +Q + C S ++ LK+ R RR +P P+++QH Sbjct: 637 TFPQLEPIQSISCCTSVSDPNVLKLTPQRRTRRKIIPSPLKVQH 680
>RPOC_WIGBR (Q8D232) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%) Frame = +1 Query: 16 SLLLTESRRQIRNSQCM---NHEYTLNYRTDLVVGSRHSSLK 132 S L +ES Q++N + N ++ +N +V+ SRH+SLK Sbjct: 942 SRLASESNIQVKNKGIVKLNNAKFVINENNKIVITSRHASLK 983
>ZNF76_HUMAN (P36508) Zinc finger protein 76| Length = 570 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +1 Query: 166 KKPYQCCILHCGQ*MKSYTSSSFRARTIAHLAAVQHVHCRPSSTNT 303 +KPY C + CG+ Y+S + V H HC+P + +T Sbjct: 312 EKPYVCTVPGCGKRFTEYSS--------LYKHHVVHTHCKPYTCST 349
>GP1D_CHLTR (P10555) Probable plasmid replicative DNA helicase (EC 3.6.1.-)| (dnaB-like protein) (Virulence plasmid protein pGP1-D) (Protein P-3) Length = 451 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/39 (48%), Positives = 23/39 (58%) Frame = -1 Query: 289 LGDSGHVEQQQDVLLFWPGRRRKCSSSFIVHNVECSIGK 173 L DSG +EQ DV+LF RK SSS N E ++GK Sbjct: 393 LRDSGQIEQDADVILF---INRKESSS----NCEITVGK 424
>NOS3_BOVIN (P29473) Nitric-oxide synthase, endothelial (EC 1.14.13.39)| (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS) Length = 1204 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 208 MKSYTSSSFRARTIAHLAAVQHVHCRPSSTNTYHLK 315 + Y SS R+ + AH +Q V +ST TYHL+ Sbjct: 132 INQYYSSIKRSGSQAHEERLQEVEAEVASTGTYHLR 167
>ZN143_HUMAN (P52747) Zinc finger protein 143 (SPH-binding factor)| Length = 626 Score = 28.5 bits (62), Expect = 4.0 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 5/102 (4%) Frame = +1 Query: 88 YRTDLVVGSRHSSLK*Y*QSF*VTQAKKPYQCCILHCGQ*MKSYTSSSFRARTIAHLAAV 267 Y T+ G +S Y + +KPY C + C + Y+S + V Sbjct: 346 YCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSS--------LYKHHV 397 Query: 268 QHVHCRPSSTN----TY-HLKVIICHRHRRHFLPDPVQLQHE 378 H H +P + N TY + + H+ H +P++ + E Sbjct: 398 VHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQE 439
>DHMH_PARDE (P29894) Methylamine dehydrogenase heavy chain precursor (EC| 1.4.99.3) (MADH) Length = 417 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%) Frame = -3 Query: 344 WRR*RWQMITF-----RWYVLVELGRQWTC*TAARCAIVLARKEEE 222 WR WQ + + R Y+LV+ +W TA+R +VL K E Sbjct: 308 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRLLVVLDAKTGE 353
>SEF1_YEAST (P34228) Suppressor protein SEF1| Length = 1057 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = -1 Query: 304 TCWLSLGDSGHVEQQQDVLLFWPGRRRK----CSSSFI 203 TCW+ S H+ Q +L WP +K CS F+ Sbjct: 413 TCWIRTPRSTHISQALLILCIWPLPNQKVLDDCSYRFV 450
>ZN561_MACFA (Q4R882) Zinc finger protein 561| Length = 486 Score = 27.7 bits (60), Expect = 6.9 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 6/110 (5%) Frame = +1 Query: 1 HTNHKSLLLTESRRQIRNSQCMNHEYTLNYRTDLVVGSRHSSLK*Y*QSF*VTQ------ 162 H KS E R RNS C+N + T + K + +S +T+ Sbjct: 275 HKGEKSFECKECGRSFRNSSCLNDH--IQIHTGIKPHKCTYCGKAFTRSTQLTEHVRTHT 332 Query: 163 AKKPYQCCILHCGQ*MKSYTSSSFRARTIAHLAAVQHVHCRPSSTNTYHL 312 KPY+C CGQ Y+ S R+ + Q C + T + L Sbjct: 333 GIKPYEC--KECGQAFAQYSGLSIHIRSHSGKKPYQCKECGKAFTTSTSL 380
>ZN561_HUMAN (Q8N587) Zinc finger protein 561| Length = 486 Score = 27.7 bits (60), Expect = 6.9 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 6/110 (5%) Frame = +1 Query: 1 HTNHKSLLLTESRRQIRNSQCMNHEYTLNYRTDLVVGSRHSSLK*Y*QSF*VTQ------ 162 H KS E R RNS C+N + T + K + +S +T+ Sbjct: 275 HKGEKSFECKECGRSFRNSSCLNDH--IQIHTGIKPHKCTYCGKAFTRSTQLTEHVRTHT 332 Query: 163 AKKPYQCCILHCGQ*MKSYTSSSFRARTIAHLAAVQHVHCRPSSTNTYHL 312 KPY+C CGQ Y+ S R+ + Q C + T + L Sbjct: 333 GIKPYEC--KECGQAFAQYSGLSIHIRSHSGKKPYQCKECGKAFTTSTSL 380
>PEPT_BACAN (Q81WU4) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 410 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%) Frame = +3 Query: 138 LTVILSYTGKETLPMLHSTL----WTMNEELHFLLLPGQ 242 L +TGK P +H T+NEEL+ +L P Q Sbjct: 80 LDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPEQ 118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,493,501 Number of Sequences: 219361 Number of extensions: 933379 Number of successful extensions: 1838 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1812 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1838 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
