ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast73h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106594.1| Zea mays PCO129034 mRNA sequence 48 0.018
2ref|XM_474469.1| Oryza sativa (japonica cultivar-group), predic... 46 0.070
3emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4,... 46 0.070
4gb|AC112210.2| Homo sapiens chromosome 3 clone RP11-221D23, comp... 46 0.070
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.070
6dbj|AB125306.1| Oryza sativa (japonica cultivar-group) SAPK5 mRN... 46 0.070
7dbj|AK100269.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.070
8emb|AL732342.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 46 0.070
9gb|AC104851.2| Homo sapiens chromosome 3 clone RP11-475N4, compl... 46 0.070
10gb|AC094784.13| Rattus norvegicus 11 BAC CH230-4O6 (Children's H... 44 0.28
11emb|CR925737.7| Zebrafish DNA sequence from clone DKEY-263O8 in ... 42 1.1
12emb|CR339047.8| Zebrafish DNA sequence from clone CH211-12K8 in ... 42 1.1
13emb|CR936370.6| Zebrafish DNA sequence from clone CH211-237H13 i... 42 1.1
14emb|BX936425.7| Zebrafish DNA sequence from clone CH211-39L24 in... 42 1.1
15emb|BX640465.7| Zebrafish DNA sequence from clone CH211-198B21 i... 42 1.1
16emb|AL365503.10| Human DNA sequence from clone RP11-409K15 on ch... 42 1.1
17emb|BX510946.18| Zebrafish DNA sequence from clone CH211-9F9 in ... 42 1.1
18emb|CR847783.6| Zebrafish DNA sequence from clone DKEYP-2C8 in l... 42 1.1
19emb|BX957299.8| Zebrafish DNA sequence from clone DKEY-179E8 in ... 42 1.1
20emb|CR762498.10| Zebrafish DNA sequence from clone DKEY-4J1 in l... 42 1.1
21emb|BX842685.6| Zebrafish DNA sequence from clone DKEY-28C10 in ... 42 1.1
22gb|AC126475.5| Homo sapiens 3 BAC RP11-356O23 (Roswell Park Canc... 42 1.1
23gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.1
24gb|AC147873.3| Monodelphis domestica clone VMRC6-582D4, complete... 42 1.1
25emb|CR759797.14| Zebrafish DNA sequence from clone DKEY-87K14 in... 42 1.1
26emb|AL732386.13| Zebrafish DNA sequence from clone XX-35D8 in li... 42 1.1
27emb|AL732398.9| Zebrafish DNA sequence from clone XX-36G15 in li... 42 1.1
28gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 42 1.1
29gb|AC112139.31| Mus musculus strain C57BL/6J clone rp23-170m6 ma... 40 4.3
30gb|CP000097.1| Synechococcus sp. CC9902, complete genome 40 4.3
31gb|AC161574.8| Mus musculus chromosome 1, clone RP23-352D14, com... 40 4.3
32gb|BT018217.1| Zea mays clone EL01N0561B09.c mRNA sequence 40 4.3
33gb|AY341443.1| Phaseolus vulgaris cultivar Sprite BAC 78L17, par... 40 4.3
34gb|AC127339.3| Mus musculus BAC clone RP23-180G16 from chromosom... 40 4.3
35gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosom... 40 4.3
36gb|AC132610.3| Mus musculus BAC clone RP23-374N15 from chromosom... 40 4.3
37gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete se... 40 4.3
38emb|Z83823.1|HS394F12 Human DNA sequence from clone RP3-394F12 o... 40 4.3
39emb|CR936380.6| Zebrafish DNA sequence from clone CH73-122H24 in... 40 4.3
40emb|Y19207.1|HSDNAHB2 Homo sapiens KRTHB2 gene for type II hair ... 40 4.3
41emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4,... 40 4.3
42emb|CR753899.5| Zebrafish DNA sequence from clone DKEY-267F18 in... 40 4.3
43emb|BX663604.9| Zebrafish DNA sequence from clone CH211-222K9 in... 40 4.3
44gb|AC127352.5| Mus musculus BAC clone RP23-81P4 from chromosome ... 40 4.3
45emb|BX571667.5| Zebrafish DNA sequence from clone DKEY-267K7 in ... 40 4.3
46gb|AC013416.4|AC013416 Homo sapiens BAC clone CTD-2522F11 from 7... 40 4.3
47dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
48gb|AC078865.22| Homo sapiens 12 BAC RP3-416H24 (Roswell Park Can... 40 4.3
49dbj|AP005678.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
50dbj|AP005704.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
51dbj|AK100568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
52dbj|AK071689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
53dbj|AK068752.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
54gb|AY325816.1| Zea mays BAC clone Z013I05, complete sequence 40 4.3
55emb|BX323550.13| Zebrafish DNA sequence from clone DKEYP-70F9 in... 40 4.3
56gb|AY104811.1| Zea mays PCO075814 mRNA sequence 40 4.3 
>gb|AY106594.1| Zea mays PCO129034 mRNA sequence
          Length = 662

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 166 tcatgccgaagtctccgctggcgtgcacctccctcaccgt 205
           ||||| |||| ||||||||||||||||||| || ||||||
Sbjct: 536 tcatgtcgaactctccgctggcgtgcacctgccgcaccgt 497
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>ref|XM_474469.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1113

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 283 cgtcgccggtgccccagccgtaccctgtcaccggcttgtcgggcttg 329
           ||||| |||||||||||||||| || |  || |||||||||||||||
Sbjct: 997 cgtcgtcggtgccccagccgtagccagagacgggcttgtcgggcttg 951
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>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19,
            complete sequence
          Length = 123272

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 283  cgtcgccggtgccccagccgtaccctgtcaccggcttgtcgggcttg 329
            ||||| |||||||||||||||| || |  || |||||||||||||||
Sbjct: 5666 cgtcgtcggtgccccagccgtagccagagacgggcttgtcgggcttg 5620
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>gb|AC112210.2| Homo sapiens chromosome 3 clone RP11-221D23, complete sequence
          Length = 146699

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 30    tttgttacaattgacaaaaagta 52
             |||||||||||||||||||||||
Sbjct: 73101 tttgttacaattgacaaaaagta 73079
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 283      cgtcgccggtgccccagccgtaccctgtcaccggcttgtcgggcttg 329
                ||||| |||||||||||||||| || |  || |||||||||||||||
Sbjct: 35380863 cgtcgtcggtgccccagccgtagccagagacgggcttgtcgggcttg 35380817



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 253      ggttgccgtcgtcctcgtcg 272
                ||||||||||||||||||||
Sbjct: 13981753 ggttgccgtcgtcctcgtcg 13981734



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 253      ggttgccgtcgtcctcgtcg 272
                ||||||||||||||||||||
Sbjct: 13978836 ggttgccgtcgtcctcgtcg 13978817
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>dbj|AB125306.1| Oryza sativa (japonica cultivar-group) SAPK5 mRNA for
            serine/threonine protein kinase SAPK5, complete cds
          Length = 1604

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 283  cgtcgccggtgccccagccgtaccctgtcaccggcttgtcgggcttg 329
            ||||| |||||||||||||||| || |  || |||||||||||||||
Sbjct: 1130 cgtcgtcggtgccccagccgtagccagagacgggcttgtcgggcttg 1084
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>dbj|AK100269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065E10, full
            insert sequence
          Length = 1636

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 283  cgtcgccggtgccccagccgtaccctgtcaccggcttgtcgggcttg 329
            ||||| |||||||||||||||| || |  || |||||||||||||||
Sbjct: 1162 cgtcgtcggtgccccagccgtagccagagacgggcttgtcgggcttg 1116
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>emb|AL732342.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0518A01, complete
             sequence
          Length = 32686

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 283   cgtcgccggtgccccagccgtaccctgtcaccggcttgtcgggcttg 329
             ||||| |||||||||||||||| || |  || |||||||||||||||
Sbjct: 12609 cgtcgtcggtgccccagccgtagccagagacgggcttgtcgggcttg 12563
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>gb|AC104851.2| Homo sapiens chromosome 3 clone RP11-475N4, complete sequence
          Length = 160039

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 30   tttgttacaattgacaaaaagta 52
            |||||||||||||||||||||||
Sbjct: 6095 tttgttacaattgacaaaaagta 6117
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>gb|AC094784.13| Rattus norvegicus 11 BAC CH230-4O6 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228501

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 36     acaattgacaaaaagtaaaaattcaa 61
              ||||||| ||||||||||||||||||
Sbjct: 164759 acaattgccaaaaagtaaaaattcaa 164784
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>emb|CR925737.7| Zebrafish DNA sequence from clone DKEY-263O8 in linkage group 10,
             complete sequence
          Length = 176107

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    cttaacagataattaattaac 83
             |||||||||||||||||||||
Sbjct: 89131 cttaacagataattaattaac 89111
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>emb|CR339047.8| Zebrafish DNA sequence from clone CH211-12K8 in linkage group 11,
              complete sequence
          Length = 137403

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     cttaacagataattaattaac 83
              |||||||||||||||||||||
Sbjct: 132795 cttaacagataattaattaac 132815
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>emb|CR936370.6| Zebrafish DNA sequence from clone CH211-237H13 in linkage group 8,
             complete sequence
          Length = 114220

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    cttaacagataattaattaac 83
             |||||||||||||||||||||
Sbjct: 26520 cttaacagataattaattaac 26540
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>emb|BX936425.7| Zebrafish DNA sequence from clone CH211-39L24 in linkage group 17,
              complete sequence
          Length = 173763

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 63     cttaacagataattaattaac 83
              |||||||||||||||||||||
Sbjct: 121197 cttaacagataattaattaac 121177
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>emb|BX640465.7| Zebrafish DNA sequence from clone CH211-198B21 in linkage group 9,
            complete sequence
          Length = 214459

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 63   cttaacagataattaattaac 83
            |||||||||||||||||||||
Sbjct: 5771 cttaacagataattaattaac 5791
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>emb|AL365503.10| Human DNA sequence from clone RP11-409K15 on chromosome 6, complete
             sequence
          Length = 105657

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 35    tacaattgacaaaaagtaaaa 55
             |||||||||||||||||||||
Sbjct: 26938 tacaattgacaaaaagtaaaa 26958
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>emb|BX510946.18| Zebrafish DNA sequence from clone CH211-9F9 in linkage group 13,
             complete sequence
          Length = 103700

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 38    aattgacaaaaagtaaaaattcaat 62
             |||||||||| ||||||||||||||
Sbjct: 37925 aattgacaaatagtaaaaattcaat 37949
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>emb|CR847783.6| Zebrafish DNA sequence from clone DKEYP-2C8 in linkage group 5,
             complete sequence
          Length = 184144

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    cttaacagataattaattaac 83
             |||||||||||||||||||||
Sbjct: 94642 cttaacagataattaattaac 94662
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>emb|BX957299.8| Zebrafish DNA sequence from clone DKEY-179E8 in linkage group 19,
             complete sequence
          Length = 168017

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    cttaacagataattaattaac 83
             |||||||||||||||||||||
Sbjct: 58822 cttaacagataattaattaac 58802
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>emb|CR762498.10| Zebrafish DNA sequence from clone DKEY-4J1 in linkage group 13,
             complete sequence
          Length = 169361

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 38    aattgacaaaaagtaaaaattcaat 62
             |||||||||| ||||||||||||||
Sbjct: 29425 aattgacaaatagtaaaaattcaat 29449
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>emb|BX842685.6| Zebrafish DNA sequence from clone DKEY-28C10 in linkage group 5,
             complete sequence
          Length = 133388

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    cttaacagataattaattaac 83
             |||||||||||||||||||||
Sbjct: 28672 cttaacagataattaattaac 28692
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>gb|AC126475.5| Homo sapiens 3 BAC RP11-356O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 115086

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    aatgttaattagctaatttgt 34
             |||||||||||||||||||||
Sbjct: 65589 aatgttaattagctaatttgt 65569
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 259    cgtcgtcctcgtcggaggcctcgcc 283
              |||||||||||||||| ||||||||
Sbjct: 528594 cgtcgtcctcgtcggacgcctcgcc 528618
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>gb|AC147873.3| Monodelphis domestica clone VMRC6-582D4, complete sequence
          Length = 165359

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 34    ttacaattgacaaaaagtaaa 54
             |||||||||||||||||||||
Sbjct: 94932 ttacaattgacaaaaagtaaa 94912
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>emb|CR759797.14| Zebrafish DNA sequence from clone DKEY-87K14 in linkage group 17,
             complete sequence
          Length = 181261

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    cttaacagataattaattaac 83
             |||||||||||||||||||||
Sbjct: 87270 cttaacagataattaattaac 87290
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>emb|AL732386.13| Zebrafish DNA sequence from clone XX-35D8 in linkage group 9, complete
             sequence
          Length = 50895

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    cttaacagataattaattaac 83
             |||||||||||||||||||||
Sbjct: 23996 cttaacagataattaattaac 23976
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>emb|AL732398.9| Zebrafish DNA sequence from clone XX-36G15 in linkage group 9, complete
             sequence
          Length = 60823

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    cttaacagataattaattaac 83
             |||||||||||||||||||||
Sbjct: 11781 cttaacagataattaattaac 11761
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 34     ttacaattgacaaaaagtaaa 54
              |||||||||||||||||||||
Sbjct: 924105 ttacaattgacaaaaagtaaa 924085
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>gb|AC112139.31| Mus musculus strain C57BL/6J clone rp23-170m6 map 6, complete sequence
          Length = 203032

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     caaaaagtaaaaattcaatc 63
              ||||||||||||||||||||
Sbjct: 171722 caaaaagtaaaaattcaatc 171741
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>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 55     aattcaatcttaacagataattaa 78
              ||||||||||| ||||||||||||
Sbjct: 245257 aattcaatctttacagataattaa 245234
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>gb|AC161574.8| Mus musculus chromosome 1, clone RP23-352D14, complete sequence
          Length = 187614

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     aattgacaaaaagtaaaaat 57
              ||||||||||||||||||||
Sbjct: 141367 aattgacaaaaagtaaaaat 141348
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>gb|BT018217.1| Zea mays clone EL01N0561B09.c mRNA sequence
          Length = 1320

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  gtcatactcgtcctcgccgt 228
            ||||||||||||||||||||
Sbjct: 1008 gtcatactcgtcctcgccgt 989
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>gb|AY341443.1| Phaseolus vulgaris cultivar Sprite BAC 78L17, partial sequence
          Length = 106592

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    acaaaaagtaaaaattcaat 62
             ||||||||||||||||||||
Sbjct: 62554 acaaaaagtaaaaattcaat 62573
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>gb|AC127339.3| Mus musculus BAC clone RP23-180G16 from chromosome 5, complete sequence
          Length = 225376

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 52    aaaaattcaatcttaacagataat 75
             ||||| ||||||||||||||||||
Sbjct: 30168 aaaaagtcaatcttaacagataat 30191
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>gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosome 7, complete sequence
          Length = 192433

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    gacaaaaagtaaaaattcaa 61
             ||||||||||||||||||||
Sbjct: 76999 gacaaaaagtaaaaattcaa 76980
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>gb|AC132610.3| Mus musculus BAC clone RP23-374N15 from chromosome 6, complete sequence
          Length = 195587

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    caaaaagtaaaaattcaatc 63
             ||||||||||||||||||||
Sbjct: 13361 caaaaagtaaaaattcaatc 13380
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>gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete sequence
          Length = 115175

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aaaagtaaaaattcaatctt 65
             ||||||||||||||||||||
Sbjct: 60469 aaaagtaaaaattcaatctt 60450
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>emb|Z83823.1|HS394F12 Human DNA sequence from clone RP3-394F12 on chromosome X Contains the
             5' end of the ODZ1 gene for odd odd Oz/ten-m homolog
             1(Drosophila), complete sequence
          Length = 109279

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    attgacaaaaagtaaaaattcaat 62
             ||||||| ||||||||||||||||
Sbjct: 71706 attgacacaaagtaaaaattcaat 71683
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>emb|CR936380.6| Zebrafish DNA sequence from clone CH73-122H24 in linkage group 22,
             complete sequence
          Length = 66129

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    attcaatcttaacagataattaat 79
             |||||||||||| |||||||||||
Sbjct: 15044 attcaatcttaaaagataattaat 15067
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>emb|Y19207.1|HSDNAHB2 Homo sapiens KRTHB2 gene for type II hair keratin 2, exons 1 to 9
          Length = 14707

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 45   aaaaagtaaaaattcaatcttaac 68
            |||||||||||||||||| |||||
Sbjct: 9414 aaaaagtaaaaattcaattttaac 9391
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>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22,
             complete sequence
          Length = 174430

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ggttgccgtcgtcctcgtcg 272
             ||||||||||||||||||||
Sbjct: 95633 ggttgccgtcgtcctcgtcg 95614



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ggttgccgtcgtcctcgtcg 272
             ||||||||||||||||||||
Sbjct: 92716 ggttgccgtcgtcctcgtcg 92697
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>emb|CR753899.5| Zebrafish DNA sequence from clone DKEY-267F18 in linkage group 5,
              complete sequence
          Length = 205476

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     ttaacagataattaattaac 83
              ||||||||||||||||||||
Sbjct: 198469 ttaacagataattaattaac 198450
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>emb|BX663604.9| Zebrafish DNA sequence from clone CH211-222K9 in linkage group 7,
            complete sequence
          Length = 161194

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 54   aaattcaatcttaacagataatta 77
            ||||||||||| ||||||||||||
Sbjct: 7821 aaattcaatctcaacagataatta 7798
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>gb|AC127352.5| Mus musculus BAC clone RP23-81P4 from chromosome 7, complete sequence
          Length = 196031

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     gacaaaaagtaaaaattcaa 61
              ||||||||||||||||||||
Sbjct: 182200 gacaaaaagtaaaaattcaa 182219
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>emb|BX571667.5| Zebrafish DNA sequence from clone DKEY-267K7 in linkage group 1, complete
              sequence
          Length = 151582

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     ttaacagataattaattaac 83
              ||||||||||||||||||||
Sbjct: 116402 ttaacagataattaattaac 116421
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>gb|AC013416.4|AC013416 Homo sapiens BAC clone CTD-2522F11 from 7, complete sequence
          Length = 117927

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   catgccgaagtctccgctgg 186
             ||||||||||||||||||||
Sbjct: 11861 catgccgaagtctccgctgg 11880
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 275      ggcctcgccgtcgccggtgc 294
                ||||||||||||||||||||
Sbjct: 10471565 ggcctcgccgtcgccggtgc 10471584
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>gb|AC078865.22| Homo sapiens 12 BAC RP3-416H24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 69230

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 45    aaaaagtaaaaattcaatcttaac 68
             |||||||||||||||||| |||||
Sbjct: 14683 aaaaagtaaaaattcaattttaac 14660
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>dbj|AP005678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1116_F08
          Length = 133805

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   ggcctcgccgtcgccggtgc 294
             ||||||||||||||||||||
Sbjct: 39170 ggcctcgccgtcgccggtgc 39189
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>dbj|AP005704.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0448B03
          Length = 147748

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   ggcctcgccgtcgccggtgc 294
             ||||||||||||||||||||
Sbjct: 71944 ggcctcgccgtcgccggtgc 71963
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>dbj|AK100568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104O10, full
            insert sequence
          Length = 4592

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 253  ggttgccgtcgtcctcgtcg 272
            ||||||||||||||||||||
Sbjct: 1903 ggttgccgtcgtcctcgtcg 1922
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>dbj|AK071689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112E13, full
           insert sequence
          Length = 1585

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 275 ggcctcgccgtcgccggtgc 294
           ||||||||||||||||||||
Sbjct: 123 ggcctcgccgtcgccggtgc 104
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>dbj|AK068752.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159C14, full
           insert sequence
          Length = 956

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 253 ggttgccgtcgtcctcgtcg 272
           ||||||||||||||||||||
Sbjct: 797 ggttgccgtcgtcctcgtcg 816
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>gb|AY325816.1| Zea mays BAC clone Z013I05, complete sequence
          Length = 152337

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   gtcggaggcctcgccgtcgc 288
             ||||||||||||||||||||
Sbjct: 46924 gtcggaggcctcgccgtcgc 46943
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>emb|BX323550.13| Zebrafish DNA sequence from clone DKEYP-70F9 in linkage group 22,
              complete sequence
          Length = 200031

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 56     attcaatcttaacagataattaat 79
              |||||||||||| |||||||||||
Sbjct: 102925 attcaatcttaaaagataattaat 102902
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>gb|AY104811.1| Zea mays PCO075814 mRNA sequence
          Length = 1579

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  gtcatactcgtcctcgccgt 228
            ||||||||||||||||||||
Sbjct: 1193 gtcatactcgtcctcgccgt 1174


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,947,375
Number of Sequences: 3902068
Number of extensions: 2947375
Number of successful extensions: 68573
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68239
Number of HSP's gapped (non-prelim): 334
length of query: 329
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 307
effective length of database: 17,147,199,772
effective search space: 5264190330004
effective search space used: 5264190330004
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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