| Clone Name | rbast73g06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483187.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2067 Score = 73.8 bits (37), Expect = 4e-10 Identities = 91/106 (85%), Gaps = 6/106 (5%) Strand = Plus / Minus Query: 67 gaggaggccttacatgattt-acagaaaagcttctcacagaacaaaaactttcatatgca 125 ||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||| || Sbjct: 1929 gaggaggtattacatgattttacagaag-gcttctcacagaacaaaaactttcttataca 1871 Query: 126 cata----caagtaaagaagcccaagcatggaacgcctcccgacaa 167 || | |||||||||||||||||||||| ||| ||||| ||||| Sbjct: 1870 caaaaaaacaagtaaagaagcccaagcatgaaacacctcctgacaa 1825
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 73.8 bits (37), Expect = 4e-10 Identities = 91/106 (85%), Gaps = 6/106 (5%) Strand = Plus / Plus Query: 67 gaggaggccttacatgattt-acagaaaagcttctcacagaacaaaaactttcatatgca 125 ||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||| || Sbjct: 24693038 gaggaggtattacatgattttacagaag-gcttctcacagaacaaaaactttcttataca 24693096 Query: 126 cata----caagtaaagaagcccaagcatggaacgcctcccgacaa 167 || | |||||||||||||||||||||| ||| ||||| ||||| Sbjct: 24693097 caaaaaaacaagtaaagaagcccaagcatgaaacacctcctgacaa 24693142
>dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1118_A06 Length = 92836 Score = 73.8 bits (37), Expect = 4e-10 Identities = 91/106 (85%), Gaps = 6/106 (5%) Strand = Plus / Plus Query: 67 gaggaggccttacatgattt-acagaaaagcttctcacagaacaaaaactttcatatgca 125 ||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||| || Sbjct: 65342 gaggaggtattacatgattttacagaag-gcttctcacagaacaaaaactttcttataca 65400 Query: 126 cata----caagtaaagaagcccaagcatggaacgcctcccgacaa 167 || | |||||||||||||||||||||| ||| ||||| ||||| Sbjct: 65401 caaaaaaacaagtaaagaagcccaagcatgaaacacctcctgacaa 65446
>dbj|AK073076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033010D24, full insert sequence Length = 2066 Score = 73.8 bits (37), Expect = 4e-10 Identities = 91/106 (85%), Gaps = 6/106 (5%) Strand = Plus / Minus Query: 67 gaggaggccttacatgattt-acagaaaagcttctcacagaacaaaaactttcatatgca 125 ||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||| || Sbjct: 1928 gaggaggtattacatgattttacagaag-gcttctcacagaacaaaaactttcttataca 1870 Query: 126 cata----caagtaaagaagcccaagcatggaacgcctcccgacaa 167 || | |||||||||||||||||||||| ||| ||||| ||||| Sbjct: 1869 caaaaaaacaagtaaagaagcccaagcatgaaacacctcctgacaa 1824
>gb|AC016845.14| Homo sapiens chromosome 11, clone RP11-5E23, complete sequence Length = 167727 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 175 aaggaagaagaaaaaacaatct 196 |||||||||||||||||||||| Sbjct: 45670 aaggaagaagaaaaaacaatct 45649
>gb|AC145973.3| Gallus gallus BAC clone CH261-2E2 from chromosome unknown, complete sequence Length = 190804 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 164 acaaataccacaaggaagaaga 185 |||||||||||||||||||||| Sbjct: 131916 acaaataccacaaggaagaaga 131937
>gb|AC163239.3| Carollia perspicillata clone 424F18, complete sequence Length = 52968 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 tttcatatgcacatacaagta 135 ||||||||||||||||||||| Sbjct: 2250 tttcatatgcacatacaagta 2230
>gb|AC144640.3| Carollia perspicillata clone 14D2, complete sequence Length = 116172 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 tttcatatgcacatacaagta 135 ||||||||||||||||||||| Sbjct: 114393 tttcatatgcacatacaagta 114373
>gb|AC166755.2| Mus musculus BAC clone RP24-220N14 from chromosome 9, complete sequence Length = 173308 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 tcacagaacaaaaactttcat 120 ||||||||||||||||||||| Sbjct: 105074 tcacagaacaaaaactttcat 105094
>ref|XM_395010.2| PREDICTED: Apis mellifera similar to GA18365-PA (LOC411539), partial mRNA Length = 3132 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 cttccagctggtggatttctt 408 ||||||||||||||||||||| Sbjct: 160 cttccagctggtggatttctt 180
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold Length = 1501503 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 tttcatatgcacatacaagta 135 ||||||||||||||||||||| Sbjct: 930811 tttcatatgcacatacaagta 930791
>gb|AC009256.9| Drosophila melanogaster clone BACR03G18, complete sequence Length = 179931 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 acagccgaacatcccaacat 62 |||||||||||||||||||| Sbjct: 156769 acagccgaacatcccaacat 156788
>gb|AC010707.17| Drosophila melanogaster clone BACR06P10, complete sequence Length = 176969 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 acagccgaacatcccaacat 62 |||||||||||||||||||| Sbjct: 42171 acagccgaacatcccaacat 42190
>gb|AC124738.5| Mus musculus BAC clone RP23-344C15 from chromosome 14, complete sequence Length = 204590 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 aagaagaaaaaacaatcttc 198 |||||||||||||||||||| Sbjct: 88613 aagaagaaaaaacaatcttc 88594
>gb|AC132303.3| Mus musculus BAC clone RP24-281P9 from chromosome 19, complete sequence Length = 177097 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ctacacagagaattgagtta 26 |||||||||||||||||||| Sbjct: 68886 ctacacagagaattgagtta 68867
>gb|AC129182.4| Mus musculus BAC clone RP23-340P24 from chromosome 19, complete sequence Length = 187601 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ctacacagagaattgagtta 26 |||||||||||||||||||| Sbjct: 176951 ctacacagagaattgagtta 176932
>emb|CR388406.7| Zebrafish DNA sequence from clone CH211-288H2 in linkage group 1, complete sequence Length = 161800 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tcacagaacaaaaactttca 119 |||||||||||||||||||| Sbjct: 16987 tcacagaacaaaaactttca 17006
>ref|XM_949371.1| Theileria annulata strain Ankara hypothetical protein (TA19695) partial mRNA Length = 8004 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 aaggaagaagaaaaaacaat 194 |||||||||||||||||||| Sbjct: 1603 aaggaagaagaaaaaacaat 1622
>emb|Z83848.1|HS57A13 Human DNA sequence from clone RP1-57A13 on chromosome Xq24 Contains the 5' end of the GRIA3 gene for glutamate receptor, ionotrophic, AMPA 3, the gene for a novel protein and a CpG island, complete sequence Length = 169693 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 aggaagaagaaaaaacaatc 195 |||||||||||||||||||| Sbjct: 110616 aggaagaagaaaaaacaatc 110597
>emb|AL353734.12| Human DNA sequence from clone RP11-430K10 on chromosome 13 Contains a peptidylprolyl isomerase (cyclophilin) pseudogene and a CpG island, complete sequence Length = 186608 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 cttacatgatttacagaaaa 94 |||||||||||||||||||| Sbjct: 115032 cttacatgatttacagaaaa 115051
>emb|BX470135.8| Zebrafish DNA sequence from clone RP71-15H20 in linkage group 8, complete sequence Length = 147292 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 aacaaaaactttcatatgca 125 |||||||||||||||||||| Sbjct: 73823 aacaaaaactttcatatgca 73842
>gb|AE014179.1| Mus musculus piebald deletion region section 7 of 11 of the complete sequence Length = 400029 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 aagaagaaaaaacaatcttc 198 |||||||||||||||||||| Sbjct: 39866 aagaagaaaaaacaatcttc 39885
>gb|AC117527.2| Homo sapiens chromosome 5 clone RP11-1A7, complete sequence Length = 167042 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 agttattgttctagtacaac 41 |||||||||||||||||||| Sbjct: 2030 agttattgttctagtacaac 2011
>gb|AC100839.2| Homo sapiens chromosome 15, clone RP11-625H11, complete sequence Length = 161309 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 taccacaaggaagaagaaaa 188 |||||||||||||||||||| Sbjct: 133675 taccacaaggaagaagaaaa 133656
>gb|AC011927.11| Homo sapiens chromosome 15, clone RP11-15O14, complete sequence Length = 162662 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 taccacaaggaagaagaaaa 188 |||||||||||||||||||| Sbjct: 9559 taccacaaggaagaagaaaa 9540
>emb|CR523967.1| Gallus gallus finished cDNA, clone ChEST692e22 Length = 909 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 ttacatgatttacagaaaag 95 |||||||||||||||||||| Sbjct: 870 ttacatgatttacagaaaag 889
>gb|AC008804.7| Homo sapiens chromosome 5 clone CTD-2085F10, complete sequence Length = 133476 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 agttattgttctagtacaac 41 |||||||||||||||||||| Sbjct: 36409 agttattgttctagtacaac 36428
>tpg|BK000438.1| TPA: TPA_exp: Homo sapiens RING finger protein COP1 gene, complete cds Length = 421987 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 acaaggaagaagaaaaaacaatct 196 ||||| |||||||||||||||||| Sbjct: 61159 acaagaaagaagaaaaaacaatct 61182
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gttattgttctagtacaact 42 |||||||||||||||||||| Sbjct: 29974809 gttattgttctagtacaact 29974790
>gb|BC090652.1| Mus musculus RIKEN cDNA A630025C20 gene, mRNA (cDNA clone MGC:116013 IMAGE:30657664), complete cds Length = 4542 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ctacacagagaattgagtta 26 |||||||||||||||||||| Sbjct: 1774 ctacacagagaattgagtta 1793
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gttattgttctagtacaact 42 |||||||||||||||||||| Sbjct: 75085 gttattgttctagtacaact 75066
>dbj|AK129442.1| Mus musculus mRNA for mKIAA1795 protein Length = 4564 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ctacacagagaattgagtta 26 |||||||||||||||||||| Sbjct: 1816 ctacacagagaattgagtta 1835
>emb|AL157871.5|CNS01RG9 Human chromosome 14 DNA sequence BAC R-638I2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 180688 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ttggctgaaaaatgccagta 298 |||||||||||||||||||| Sbjct: 58651 ttggctgaaaaatgccagta 58632
>gb|AE003501.4| Drosophila melanogaster chromosome X, section 53 of 74 of the complete sequence Length = 323840 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 acagccgaacatcccaacat 62 |||||||||||||||||||| Sbjct: 191843 acagccgaacatcccaacat 191862
>emb|AL357093.4|CNS05TDS Human chromosome 14 DNA sequence BAC R-356K23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 167254 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 gcctgactttcatcagagcagatg 352 ||||| |||||||||||||||||| Sbjct: 140185 gcctggctttcatcagagcagatg 140208
>dbj|AB076079.1| Mus musculus mlr2 mRNA for transcription factor MLR2, complete cds Length = 2776 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ctacacagagaattgagtta 26 |||||||||||||||||||| Sbjct: 1991 ctacacagagaattgagtta 2010
>emb|AL359265.8| Human DNA sequence from clone RP11-195C7 on chromosome 1 Contains the 5' end of the gene for constitutive photomorphogenic protein (COP1), a novel gene, a ribosomal protein L13 (RPL13) pseudogene, a novel pseudogene and a CpG island, complete sequence Length = 155805 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 acaaggaagaagaaaaaacaatct 196 ||||| |||||||||||||||||| Sbjct: 94647 acaagaaagaagaaaaaacaatct 94624
>gb|AC173479.1| Mus musculus BAC clone RP23-428F8 from chromosome 3, complete sequence Length = 198897 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 aagaagaaaaaacaatcttc 198 |||||||||||||||||||| Sbjct: 195288 aagaagaaaaaacaatcttc 195269
>gb|AC164435.3| Mus musculus BAC clone RP23-151F4 from chromosome 3, complete sequence Length = 218995 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 aagaagaaaaaacaatcttc 198 |||||||||||||||||||| Sbjct: 160856 aagaagaaaaaacaatcttc 160875
>emb|AL731822.31| Mouse DNA sequence from clone RP23-105H6 on chromosome 2, complete sequence Length = 218037 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 acacacctgccagccagcct 226 |||||||||||||||||||| Sbjct: 151609 acacacctgccagccagcct 151628 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,800,928 Number of Sequences: 3902068 Number of extensions: 4800928 Number of successful extensions: 101998 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101859 Number of HSP's gapped (non-prelim): 135 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)