ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast73f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC122838.3| Mus musculus BAC clone RP23-191E1 from 3, complet... 40 0.33
2gb|AC140380.3| Mus musculus BAC clone RP23-175B15 from 3, comple... 40 0.33
3gb|BC064727.1| Mus musculus nuclear transport factor 2-like expo... 38 1.3
4gb|BC068166.1| Mus musculus cDNA clone IMAGE:30361776, partial cds 38 1.3
5gb|U39993.1| Caenorhabditis elegans cosmid F47E1, complete sequence 38 1.3
6dbj|AK144349.1| Mus musculus 21 days neonate cerebellum cDNA, RI... 38 1.3
7dbj|AK032102.1| Mus musculus adult male medulla oblongata cDNA, ... 38 1.3
8gb|BC094570.1| Mus musculus cDNA clone IMAGE:30361291, partial cds 38 1.3
9gb|AC151847.4| Ornithorhynchus anatinus BAC clone OABb-156A1 fro... 38 1.3
10ref|NM_172782.1| Mus musculus nuclear transport factor 2-like ex... 38 1.3
11emb|AL731672.12| Mouse DNA sequence from clone RP23-161L11 on ch... 38 1.3
12gb|AC018491.9| Drosophila melanogaster clone BACR11H15, complete... 36 5.1
13emb|CR627491.15| Zebrafish DNA sequence from clone DKEY-163B6 in... 36 5.1
14ref|XM_571545.1| Cryptococcus neoformans var. neoformans JEC21 k... 36 5.1
15gb|AC004966.2| Homo sapiens PAC clone RP5-1107K15 from 7, comple... 36 5.1
16emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in ... 36 5.1
17emb|Y00539.1|FDAPCD Calothrix (PCC7601) apcD gene for allophycoc... 36 5.1
18emb|AJ721089.1| Gallus gallus mRNA for hypothetical protein, clo... 36 5.1
19emb|BX004886.8| Zebrafish DNA sequence from clone DKEY-33P4 in l... 36 5.1
20emb|BX537317.7| Zebrafish DNA sequence from clone DKEY-148L4 in ... 36 5.1
21emb|BX465215.8| Zebrafish DNA sequence from clone DKEY-186M8 in ... 36 5.1
22ref|NM_001006286.1| Gallus gallus chromatin modifying protein 4B... 36 5.1
23gb|AC119676.2| Homo sapiens chromosome 1 clone RP5-820O16, compl... 36 5.1
24gb|AC149077.19| Danio rerio clone ch211-270c14, complete sequence 36 5.1
25gb|AC079070.6| Homo sapiens chromosome 18, clone RP11-126K15, co... 36 5.1
26gb|AC092355.2| Homo sapiens chromosome 7 clone RP11-310D24, comp... 36 5.1
27gb|AC034103.7|AC034103 Homo sapiens chromosome 15 clone CTD-3231... 36 5.1
28gb|AC013509.5|AC013509 Homo sapiens chromosome , clone RP11-115I... 36 5.1
29gb|AC068711.9|AC068711 Homo sapiens chromosome 15 clone CTD-2644... 36 5.1
30emb|BX465186.11| Zebrafish DNA sequence from clone DKEY-106M10 i... 36 5.1
31emb|BX248509.4| Zebrafish DNA sequence from clone CH211-113O22, ... 36 5.1
32gb|AC105253.3| Homo sapiens BAC clone RP11-557C16 from 2, comple... 36 5.1
33gb|AC011716.7|AC011716 Homo sapiens chromosome 8 clone RP11-65D1... 36 5.1
34gb|AE002611.5| Drosophila melanogaster chromosome X, section 66 ... 36 5.1
35emb|BX294666.6| Zebrafish DNA sequence from clone CH211-251M11 i... 36 5.1
36emb|AL845461.11| Mouse DNA sequence from clone RP23-331F18 on ch... 36 5.1
37emb|AL929372.16| Mouse DNA sequence from clone RP23-461G6 on chr... 36 5.1
38emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, ... 36 5.1
39emb|AL772238.7| Mouse DNA sequence from clone RP23-344G15 on chr... 36 5.1 
>gb|AC122838.3| Mus musculus BAC clone RP23-191E1 from 3, complete sequence
          Length = 196023

 Score = 40.1 bits (20), Expect = 0.33
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     tgattacctcatttcaattc 34
              ||||||||||||||||||||
Sbjct: 145462 tgattacctcatttcaattc 145481
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>gb|AC140380.3| Mus musculus BAC clone RP23-175B15 from 3, complete sequence
          Length = 206396

 Score = 40.1 bits (20), Expect = 0.33
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     tgattacctcatttcaattc 34
              ||||||||||||||||||||
Sbjct: 104995 tgattacctcatttcaattc 104976
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>gb|BC064727.1| Mus musculus nuclear transport factor 2-like export factor 2, mRNA
            (cDNA clone IMAGE:30458477), partial cds
          Length = 2470

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   attgattacctcatttcaa 31
            |||||||||||||||||||
Sbjct: 1156 attgattacctcatttcaa 1138
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>gb|BC068166.1| Mus musculus cDNA clone IMAGE:30361776, partial cds
          Length = 2453

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   attgattacctcatttcaa 31
            |||||||||||||||||||
Sbjct: 1134 attgattacctcatttcaa 1116
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>gb|U39993.1| Caenorhabditis elegans cosmid F47E1, complete sequence
          Length = 42799

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    atttcaattcaatacaata 43
             |||||||||||||||||||
Sbjct: 27714 atttcaattcaatacaata 27696
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>dbj|AK144349.1| Mus musculus 21 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:G630029H06 product:NTF2-related
            export protein 2, full insert sequence
          Length = 2466

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   attgattacctcatttcaa 31
            |||||||||||||||||||
Sbjct: 1166 attgattacctcatttcaa 1148
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>dbj|AK032102.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330587F24 product:NTF2-related
            export protein 2, full insert sequence
          Length = 2450

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   attgattacctcatttcaa 31
            |||||||||||||||||||
Sbjct: 1152 attgattacctcatttcaa 1134
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>gb|BC094570.1| Mus musculus cDNA clone IMAGE:30361291, partial cds
          Length = 2422

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   attgattacctcatttcaa 31
            |||||||||||||||||||
Sbjct: 1098 attgattacctcatttcaa 1080
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>gb|AC151847.4| Ornithorhynchus anatinus BAC clone OABb-156A1 from chromosome unknown,
             complete sequence
          Length = 120614

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    ttacctcatttcaattcaa 36
             |||||||||||||||||||
Sbjct: 62361 ttacctcatttcaattcaa 62343
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>ref|NM_172782.1| Mus musculus nuclear transport factor 2-like export factor 2 (Nxt2),
            mRNA
          Length = 2450

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   attgattacctcatttcaa 31
            |||||||||||||||||||
Sbjct: 1152 attgattacctcatttcaa 1134
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>emb|AL731672.12| Mouse DNA sequence from clone RP23-161L11 on chromosome X, complete
             sequence
          Length = 232171

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    attgattacctcatttcaa 31
             |||||||||||||||||||
Sbjct: 46340 attgattacctcatttcaa 46322
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>gb|AC018491.9| Drosophila melanogaster clone BACR11H15, complete sequence
          Length = 177953

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     tttcaattcaatacaata 43
              ||||||||||||||||||
Sbjct: 136685 tttcaattcaatacaata 136668
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>emb|CR627491.15| Zebrafish DNA sequence from clone DKEY-163B6 in linkage group 8, complete
              sequence
          Length = 243757

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 25     atttcaattcaatacaat 42
              ||||||||||||||||||
Sbjct: 242195 atttcaattcaatacaat 242178
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>ref|XM_571545.1| Cryptococcus neoformans var. neoformans JEC21 kinesin (CNF02260)
            partial mRNA
          Length = 2423

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 10   atcattgattacctcatt 27
            ||||||||||||||||||
Sbjct: 1741 atcattgattacctcatt 1724
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>gb|AC004966.2| Homo sapiens PAC clone RP5-1107K15 from 7, complete sequence
          Length = 134084

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 23    tcatttcaattcaataca 40
             ||||||||||||||||||
Sbjct: 82874 tcatttcaattcaataca 82891
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>emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in linkage group 8,
             complete sequence
          Length = 211489

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 25    atttcaattcaatacaat 42
             ||||||||||||||||||
Sbjct: 31964 atttcaattcaatacaat 31981
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>emb|Y00539.1|FDAPCD Calothrix (PCC7601) apcD gene for allophycocyanin B [alpha(APB)]
          Length = 1447

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  tcatttcaattcaataca 40
           ||||||||||||||||||
Sbjct: 432 tcatttcaattcaataca 449
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>emb|AJ721089.1| Gallus gallus mRNA for hypothetical protein, clone 34n7
          Length = 1640

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 22   ctcatttcaattcaatac 39
            ||||||||||||||||||
Sbjct: 1192 ctcatttcaattcaatac 1175
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>emb|BX004886.8| Zebrafish DNA sequence from clone DKEY-33P4 in linkage group 10,
             complete sequence
          Length = 125715

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 19    tacctcatttcaattcaa 36
             ||||||||||||||||||
Sbjct: 16245 tacctcatttcaattcaa 16228
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>emb|BX537317.7| Zebrafish DNA sequence from clone DKEY-148L4 in linkage group 8, complete
              sequence
          Length = 191141

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 21     cctcatttcaattcaatacaat 42
              ||||||||||||||||| ||||
Sbjct: 103380 cctcatttcaattcaattcaat 103401
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>emb|BX465215.8| Zebrafish DNA sequence from clone DKEY-186M8 in linkage group 8, complete
              sequence
          Length = 133505

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 21     cctcatttcaattcaatacaat 42
              ||||||||||||||||| ||||
Sbjct: 128285 cctcatttcaattcaattcaat 128264
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>ref|NM_001006286.1| Gallus gallus chromatin modifying protein 4B (CHMP4B), mRNA
          Length = 1640

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 22   ctcatttcaattcaatac 39
            ||||||||||||||||||
Sbjct: 1192 ctcatttcaattcaatac 1175
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>gb|AC119676.2| Homo sapiens chromosome 1 clone RP5-820O16, complete sequence
          Length = 160573

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    ttacctcatttcaattca 35
             ||||||||||||||||||
Sbjct: 62505 ttacctcatttcaattca 62488
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>gb|AC149077.19| Danio rerio clone ch211-270c14, complete sequence
          Length = 134981

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 25    atttcaattcaatacaat 42
             ||||||||||||||||||
Sbjct: 68308 atttcaattcaatacaat 68291
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>gb|AC079070.6| Homo sapiens chromosome 18, clone RP11-126K15, complete sequence
          Length = 191464

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 11     tcattgattacctcattt 28
              ||||||||||||||||||
Sbjct: 102194 tcattgattacctcattt 102211
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>gb|AC092355.2| Homo sapiens chromosome 7 clone RP11-310D24, complete sequence
          Length = 91792

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 23    tcatttcaattcaataca 40
             ||||||||||||||||||
Sbjct: 13063 tcatttcaattcaataca 13046
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>gb|AC034103.7|AC034103 Homo sapiens chromosome 15 clone CTD-3231F14 map 15q21.2, complete
              sequence
          Length = 165416

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     tttcaattcaatacaata 43
              ||||||||||||||||||
Sbjct: 127254 tttcaattcaatacaata 127237
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>gb|AC013509.5|AC013509 Homo sapiens chromosome , clone RP11-115I9, complete sequence
          Length = 151544

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 22    ctcatttcaattcaatacaata 43
             |||||||||||||||| |||||
Sbjct: 17163 ctcatttcaattcaattcaata 17142
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>gb|AC068711.9|AC068711 Homo sapiens chromosome 15 clone CTD-2644F13 map 15q21.3, complete
             sequence
          Length = 154883

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    tttcaattcaatacaata 43
             ||||||||||||||||||
Sbjct: 10912 tttcaattcaatacaata 10895
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>emb|BX465186.11| Zebrafish DNA sequence from clone DKEY-106M10 in linkage group 10,
              complete sequence
          Length = 247227

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 19     tacctcatttcaattcaa 36
              ||||||||||||||||||
Sbjct: 214092 tacctcatttcaattcaa 214075
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>emb|BX248509.4| Zebrafish DNA sequence from clone CH211-113O22, complete sequence
          Length = 61707

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 23    tcatttcaattcaataca 40
             ||||||||||||||||||
Sbjct: 35598 tcatttcaattcaataca 35581
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>gb|AC105253.3| Homo sapiens BAC clone RP11-557C16 from 2, complete sequence
          Length = 72925

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    tgattacctcatttcaat 32
             ||||||||||||||||||
Sbjct: 40411 tgattacctcatttcaat 40394
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>gb|AC011716.7|AC011716 Homo sapiens chromosome 8 clone RP11-65D13, complete sequence
          Length = 172327

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 22    ctcatttcaattcaatacaata 43
             |||||||||||||||| |||||
Sbjct: 16670 ctcatttcaattcaattcaata 16691
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>gb|AE002611.5| Drosophila melanogaster chromosome X, section 66 of 74 of the complete
              sequence
          Length = 297848

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     tttcaattcaatacaata 43
              ||||||||||||||||||
Sbjct: 227547 tttcaattcaatacaata 227530
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>emb|BX294666.6| Zebrafish DNA sequence from clone CH211-251M11 in linkage group 10,
              complete sequence
          Length = 184574

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 19     tacctcatttcaattcaa 36
              ||||||||||||||||||
Sbjct: 179539 tacctcatttcaattcaa 179556
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>emb|AL845461.11| Mouse DNA sequence from clone RP23-331F18 on chromosome 2, complete
            sequence
          Length = 33467

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 17   attacctcatttcaattc 34
            ||||||||||||||||||
Sbjct: 7260 attacctcatttcaattc 7277
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>emb|AL929372.16| Mouse DNA sequence from clone RP23-461G6 on chromosome 2, complete
             sequence
          Length = 170342

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 9     tatcattgattacctcatttca 30
             ||||||||||||||| ||||||
Sbjct: 38848 tatcattgattacctgatttca 38869
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>emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, complete sequence
          Length = 124954

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     tcatttcaattcaataca 40
              ||||||||||||||||||
Sbjct: 120352 tcatttcaattcaataca 120335
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>emb|AL772238.7| Mouse DNA sequence from clone RP23-344G15 on chromosome 4, complete
             sequence
          Length = 55787

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 24    catttcaattcaatacaa 41
             ||||||||||||||||||
Sbjct: 49163 catttcaattcaatacaa 49146


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 320,097
Number of Sequences: 3902068
Number of extensions: 320097
Number of successful extensions: 91619
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91539
Number of HSP's gapped (non-prelim): 76
length of query: 43
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 23
effective length of database: 17,155,003,908
effective search space: 394565089884
effective search space used: 394565089884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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