ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast73d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) 67 2e-11
2CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein ki... 62 7e-10
3CPK24_ARATH (Q9LDI3) CBL-interacting serine/threonine-protein ki... 44 2e-04
4CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein ki... 41 0.002
5Y442_CHLPN (Q9Z8A1) Hypothetical protein CPn_0442/CP0311/CPj0442... 31 1.8
6GLGX_SHIFL (Q83J89) Glycogen debranching enzyme (EC 3.2.1.-) (Gl... 29 6.8
7GLGX_ECOLI (P15067) Glycogen debranching enzyme (EC 3.2.1.-) (Gl... 29 6.8
8GLGX_ECOL6 (Q8FCR8) Glycogen debranching enzyme (EC 3.2.1.-) (Gl... 29 6.8
9GLGX_ECO57 (Q8X6X8) Glycogen debranching enzyme (EC 3.2.1.-) (Gl... 29 6.8
10HISX_LISIN (Q92E84) Histidinol dehydrogenase (EC 1.1.1.23) (HDH) 28 8.9

>CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1)|
          Length = 449

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 30/66 (45%), Positives = 45/66 (68%)
 Frame = -2

Query: 444 VKKDGGMLKMEGSKPGRKGVMSIDAEIFEVTPDFHLVELKKTNGDTLEYQRVFNQEMRPA 265
           ++K    ++ME  K GRKG +++  E+F+V P  H+VELKK  GDTLE+Q+ F + +   
Sbjct: 372 IQKKNYKMRMENLKAGRKGNLNVATEVFQVAPSLHVVELKKAKGDTLEFQK-FYRTLSTQ 430

Query: 264 LKDIVW 247
           LKD+VW
Sbjct: 431 LKDVVW 436



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>CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein kinase 15 (EC|
           2.7.11.1) (Serine/threonine-protein kinase ATPK10)
           (SOS2-like protein kinase PKS3) (SOS-interacting protein
           2) (SNF1-related kinase 3.1)
          Length = 421

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 25/46 (54%), Positives = 35/46 (76%)
 Frame = -2

Query: 378 IDAEIFEVTPDFHLVELKKTNGDTLEYQRVFNQEMRPALKDIVWAW 241
           ++AE+FE+ P +H+V LKK+ GDT EY+RV  + +RPAL D V AW
Sbjct: 375 VEAEVFEIAPSYHMVVLKKSGGDTAEYKRVMKESIRPALIDFVLAW 420



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>CPK24_ARATH (Q9LDI3) CBL-interacting serine/threonine-protein kinase 24 (EC|
           2.7.11.1) (SNF1-related kinase 3.11) (SALT OVERLY
           SENSITIVE 2 protein)
          Length = 446

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 38/58 (65%)
 Frame = -2

Query: 420 KMEGSKPGRKGVMSIDAEIFEVTPDFHLVELKKTNGDTLEYQRVFNQEMRPALKDIVW 247
           ++EG    + G +++  EI+EV P   +V+++K  G+TLEY + F +++   L++I+W
Sbjct: 373 RLEGLSSIKAGQLAVVIEIYEVAPSLFMVDVRKAAGETLEYHK-FYKKLCSKLENIIW 429



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>CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein kinase 1 (EC|
           2.7.11.1) (SOS2-like protein kinase PKS13) (SNF1-related
           kinase 3.16)
          Length = 444

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
 Frame = -2

Query: 444 VKKDGGMLKMEGSKPGRKGV--MSIDAEIFEVTPDFHLVELKKTNGDTLEYQRVFNQEMR 271
           V+K    L+++  +  +KG   +S+ AE+FE+ P  ++VEL+K+ GD+  Y++++ +   
Sbjct: 372 VQKKHAKLRVKQEERNQKGQVGLSVTAEVFEIKPSLNVVELRKSYGDSCLYRQLYER--- 428

Query: 270 PALKDI 253
             LKD+
Sbjct: 429 -LLKDV 433



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>Y442_CHLPN (Q9Z8A1) Hypothetical protein CPn_0442/CP0311/CPj0442/CpB0458|
          Length = 172

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = -3

Query: 140 SVIFIMPCLLFLSIPLVMSV*TSVIIF 60
           S++FI P ++F+S+ L+MSV TSV +F
Sbjct: 109 SLVFIPPPVVFISLGLLMSVTTSVTLF 135



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>GLGX_SHIFL (Q83J89) Glycogen debranching enzyme (EC 3.2.1.-) (Glycogen operon|
           protein glgX)
          Length = 657

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 81  HRHNEGNGKE*QTWHNKNYRN 143
           H+HNE NG+E +   N NY N
Sbjct: 455 HKHNEANGEENRDGTNNNYSN 475



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>GLGX_ECOLI (P15067) Glycogen debranching enzyme (EC 3.2.1.-) (Glycogen operon|
           protein glgX)
          Length = 657

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 81  HRHNEGNGKE*QTWHNKNYRN 143
           H+HNE NG+E +   N NY N
Sbjct: 455 HKHNEANGEENRDGTNNNYSN 475



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>GLGX_ECOL6 (Q8FCR8) Glycogen debranching enzyme (EC 3.2.1.-) (Glycogen operon|
           protein glgX)
          Length = 657

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 81  HRHNEGNGKE*QTWHNKNYRN 143
           H+HNE NG+E +   N NY N
Sbjct: 455 HKHNEANGEENRDGTNNNYSN 475



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>GLGX_ECO57 (Q8X6X8) Glycogen debranching enzyme (EC 3.2.1.-) (Glycogen operon|
           protein glgX)
          Length = 657

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 81  HRHNEGNGKE*QTWHNKNYRN 143
           H+HNE NG+E +   N NY N
Sbjct: 455 HKHNEANGEENRDGTNNNYSN 475



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>HISX_LISIN (Q92E84) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 427

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 58  QKMITEVYTDITRGMERNNKHGIIK-ITETHGRLLIVASSCKMLHL 192
           +K+  +   ++ + +E   +  I K  TE+HG+++I  S+ +M H+
Sbjct: 270 EKIAQQTKIELNKQLENLPRKAIAKEATESHGKIIITKSTAEMFHI 315


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,969,432
Number of Sequences: 219361
Number of extensions: 1244229
Number of successful extensions: 3265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3265
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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