ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast73c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 115 8e-23
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 115 8e-23
3emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396... 115 8e-23
4dbj|AB071600.1| Oryza sativa (japonica cultivar-group) gene for ... 115 8e-23
5dbj|AB064519.1| Oryza sativa (japonica cultivar-group) OsRS2 mRN... 115 8e-23
6gb|AF126489.1|AF126489 Zea mays rough sheath2 protein (rs2) gene... 80 5e-12
7gb|AF143447.1| Zea mays rough sheath 2 (rs2) mRNA, complete cds 80 5e-12
8gb|AC132003.4| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
11ref|XM_775339.1| PREDICTED: Strongylocentrotus purpuratus simila... 46 0.063
12gb|AC016966.19| Homo sapiens 3 BAC RP11-53D15 (Roswell Park Canc... 44 0.25
13gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.98
14gb|AC134570.5| Mus musculus BAC clone RP24-252B18 from chromosom... 42 0.98
15gb|AC010587.6| Homo sapiens chromosome 5 clone CTC-394G3, comple... 42 0.98
16gb|AC010372.6| Homo sapiens chromosome 5 clone CTD-2049O16, comp... 42 0.98
17dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.98
18gb|AY662620.1| Aspidoscelis tigris recombination activating gene... 40 3.9
19gb|AC134426.20| Mus musculus chromosome 1, clone RP24-342A12, co... 40 3.9
20gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 3.9
21gb|AY426175.1| Cryptococcus neoformans var. neoformans Sec53p (S... 40 3.9
22gb|DQ200395.1| Solanum tuberosum clone 070D08 unknown mRNA 40 3.9
23ref|XM_580523.2| PREDICTED: Bos taurus similar to cutaneous T-ce... 40 3.9
24gb|AY307215.1| Zoothera dauma recombination-activating protein ... 40 3.9
25gb|AY307214.1| Turdus philomelos recombination-activating prote... 40 3.9
26gb|AY307206.1| Platycichla leucops recombination-activating pro... 40 3.9
27gb|AY307190.1| Entomodestes leucotis recombination-activating p... 40 3.9
28gb|AY307184.1| Catharus guttatus recombination-activating prote... 40 3.9
29ref|XM_844200.1| PREDICTED: Canis familiaris similar to cutaneou... 40 3.9
30ref|XM_534155.2| PREDICTED: Canis familiaris similar to cutaneou... 40 3.9
31ref|XM_853223.1| PREDICTED: Canis familiaris similar to cutaneou... 40 3.9
32ref|XM_853183.1| PREDICTED: Canis familiaris similar to cutaneou... 40 3.9
33ref|XM_853101.1| PREDICTED: Canis familiaris similar to cutaneou... 40 3.9
34ref|XM_853024.1| PREDICTED: Canis familiaris similar to cutaneou... 40 3.9
35ref|XM_572212.1| Cryptococcus neoformans var. neoformans JEC21 p... 40 3.9
36emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 40 3.9
37emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4,... 40 3.9
38gb|AC162880.4| Mus musculus chromosome 1, clone RP24-275N11, com... 40 3.9
39emb|CR387927.9| Zebrafish DNA sequence from clone CH211-260P11 i... 40 3.9
40gb|AC026689.6| Homo sapiens chromosome 5 clone CTB-55A14, comple... 40 3.9
41gb|AC118549.2| Homo sapiens chromosome 1 clone RP11-306I4, compl... 40 3.9
42gb|AY057039.1| Turdus falklandii recombination activating protei... 40 3.9
43dbj|AK089469.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 3.9
44dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
45dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
46gb|AY443305.1| Muscicapa ferruginea recombination activating pro... 40 3.9
47gb|AY443265.1| Catharus ustulatus recombination activating prote... 40 3.9
48gb|AY443263.1| Batis mixta recombination activating protein 1 (R... 40 3.9
49gb|AC087564.6| Homo sapiens chromosome 16 clone RP11-437L7, comp... 40 3.9
50gb|AF262043.1|T26D3 Arabidopsis thaliana BAC T26D3 40 3.9
51dbj|AP005773.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
52gb|U68461.1|SAU68461 Striga asiatica actin (SA-ACT1) gene, compl... 40 3.9
53emb|AL121992.24|HSDJ680D5 Human DNA sequence from clone RP4-680D... 40 3.9
54gb|AC140250.3| Mus musculus BAC clone RP24-288J3 from 1, complet... 40 3.9
55gb|U51897.1|MDU51897 Monodelphis domestica recombination-activat... 40 3.9
56gb|U88239.1|TSU88239 Trichinella spiralis hypothetical ORF 17.20... 40 3.9
57gb|AC101992.11| Mus musculus chromosome 3, clone RP24-377J3, com... 40 3.9 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  115 bits (58), Expect = 8e-23
 Identities = 99/112 (88%), Gaps = 3/112 (2%)
 Strand = Plus / Plus

                                                                            
Query: 169      gccgttcatctcgccgggtggccagcggcggcacgaggagccgacctgctcgaggaactt 228
                |||||| |||||  |||| |||||||||||||| | ||   ||||||| |||||||||||
Sbjct: 23588859 gccgttgatctctacgggcggccagcggcggcaggcgg---cgacctggtcgaggaactt 23588915

                                                                    
Query: 229      ggtgaggcgggcgtgcttggtggcccactgctccgccatcttctgctccttg 280
                || |||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 23588916 ggcgaggcgggcgtgcttggccgcccactgctccgccatcttctgctccttg 23588967
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  115 bits (58), Expect = 8e-23
 Identities = 99/112 (88%), Gaps = 3/112 (2%)
 Strand = Plus / Plus

                                                                            
Query: 169      gccgttcatctcgccgggtggccagcggcggcacgaggagccgacctgctcgaggaactt 228
                |||||| |||||  |||| |||||||||||||| | ||   ||||||| |||||||||||
Sbjct: 23517050 gccgttgatctctacgggcggccagcggcggcaggcgg---cgacctggtcgaggaactt 23517106

                                                                    
Query: 229      ggtgaggcgggcgtgcttggtggcccactgctccgccatcttctgctccttg 280
                || |||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 23517107 ggcgaggcgggcgtgcttggccgcccactgctccgccatcttctgctccttg 23517158
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>emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 157690

 Score =  115 bits (58), Expect = 8e-23
 Identities = 99/112 (88%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                          
Query: 169    gccgttcatctcgccgggtggccagcggcggcacgaggagccgacctgctcgaggaactt 228
              |||||| |||||  |||| |||||||||||||| | ||   ||||||| |||||||||||
Sbjct: 117551 gccgttgatctctacgggcggccagcggcggcaggcgg---cgacctggtcgaggaactt 117495

                                                                  
Query: 229    ggtgaggcgggcgtgcttggtggcccactgctccgccatcttctgctccttg 280
              || |||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 117494 ggcgaggcgggcgtgcttggccgcccactgctccgccatcttctgctccttg 117443
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>dbj|AB071600.1| Oryza sativa (japonica cultivar-group) gene for transcription factor
            OsRS2, complete cds, cultivar:Nipponbare
          Length = 6510

 Score =  115 bits (58), Expect = 8e-23
 Identities = 99/112 (88%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 169  gccgttcatctcgccgggtggccagcggcggcacgaggagccgacctgctcgaggaactt 228
            |||||| |||||  |||| |||||||||||||| | ||   ||||||| |||||||||||
Sbjct: 5771 gccgttgatctctacgggcggccagcggcggcaggcgg---cgacctggtcgaggaactt 5715

                                                                
Query: 229  ggtgaggcgggcgtgcttggtggcccactgctccgccatcttctgctccttg 280
            || |||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 5714 ggcgaggcgggcgtgcttggccgcccactgctccgccatcttctgctccttg 5663
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>dbj|AB064519.1| Oryza sativa (japonica cultivar-group) OsRS2 mRNA for transcription
            factor rough sheath 2 like protein, complete cds
          Length = 1512

 Score =  115 bits (58), Expect = 8e-23
 Identities = 99/112 (88%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 169  gccgttcatctcgccgggtggccagcggcggcacgaggagccgacctgctcgaggaactt 228
            |||||| |||||  |||| |||||||||||||| | ||   ||||||| |||||||||||
Sbjct: 1251 gccgttgatctctacgggcggccagcggcggcaggcgg---cgacctggtcgaggaactt 1195

                                                                
Query: 229  ggtgaggcgggcgtgcttggtggcccactgctccgccatcttctgctccttg 280
            || |||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 1194 ggcgaggcgggcgtgcttggccgcccactgctccgccatcttctgctccttg 1143
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>gb|AF126489.1|AF126489 Zea mays rough sheath2 protein (rs2) gene, complete cds
          Length = 1420

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 214  ctgctcgaggaacttggtgaggcgggcgtgcttggtggcccactgctccgccatcttctg 273
            |||||||| |||||||| || ||| |||||||||| |||||||||||| |||||||||| 
Sbjct: 1110 ctgctcgacgaacttggcgacgcgcgcgtgcttggcggcccactgctcggccatcttctc 1051

                    
Query: 274  ctccttga 281
            ||||||||
Sbjct: 1050 ctccttga 1043
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>gb|AF143447.1| Zea mays rough sheath 2 (rs2) mRNA, complete cds
          Length = 1692

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 214  ctgctcgaggaacttggtgaggcgggcgtgcttggtggcccactgctccgccatcttctg 273
            |||||||| |||||||| || ||| |||||||||| |||||||||||| |||||||||| 
Sbjct: 1362 ctgctcgacgaacttggcgacgcgcgcgtgcttggcggcccactgctcggccatcttctc 1303

                    
Query: 274  ctccttga 281
            ||||||||
Sbjct: 1302 ctccttga 1295
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>gb|AC132003.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0091D07, complete sequence
          Length = 144652

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                         
Query: 211   gacctgctcgaggaacttggtgaggcgggcgtgcttggtggcccactgctccgccatctt 270
             |||||| ||| |||||||   |||||||| ||||||||  || ||||||||||||| |||
Sbjct: 75518 gacctggtcgtggaacttttcgaggcgggtgtgcttggctgctcactgctccgccaactt 75459

                        
Query: 271   ctgctccttga 281
             ||||| |||||
Sbjct: 75458 ctgctacttga 75448
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                            
Query: 211      gacctgctcgaggaacttggtgaggcgggcgtgcttggtggcccactgctccgccatctt 270
                |||||| ||| |||||||   |||||||| ||||||||  || ||||||||||||| |||
Sbjct: 15331888 gacctggtcgtggaacttttcgaggcgggtgtgcttggctgctcactgctccgccaactt 15331829

                           
Query: 271      ctgctccttga 281
                ||||| |||||
Sbjct: 15331828 ctgctacttga 15331818
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                            
Query: 211      gacctgctcgaggaacttggtgaggcgggcgtgcttggtggcccactgctccgccatctt 270
                |||||| ||| |||||||   |||||||| ||||||||  || ||||||||||||| |||
Sbjct: 15414825 gacctggtcgtggaacttttcgaggcgggtgtgcttggctgctcactgctccgccaactt 15414766

                           
Query: 271      ctgctccttga 281
                ||||| |||||
Sbjct: 15414765 ctgctacttga 15414755
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>ref|XM_775339.1| PREDICTED: Strongylocentrotus purpuratus similar to surfeit 6-like
           (LOC574931), mRNA
          Length = 1197

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 259 ctccgccatcttctgctccttgagctc 285
           ||||||||||||||||||||| |||||
Sbjct: 888 ctccgccatcttctgctccttcagctc 862
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>gb|AC016966.19| Homo sapiens 3 BAC RP11-53D15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 94125

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 57    tgacaaaagagaagaaaactaaagaacaag 86
             |||||||||| ||||||| |||||||||||
Sbjct: 35393 tgacaaaagacaagaaaaataaagaacaag 35364
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>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21,
              complete sequence
          Length = 151267

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 53     gttgtgacaaaagagaagaaaacta 77
              ||||||| |||||||||||||||||
Sbjct: 112707 gttgtgaaaaaagagaagaaaacta 112683
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>gb|AC134570.5| Mus musculus BAC clone RP24-252B18 from chromosome 18, complete
             sequence
          Length = 183551

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 98    tgccatcgtcttctctggggt 118
             |||||||||||||||||||||
Sbjct: 95641 tgccatcgtcttctctggggt 95621
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>gb|AC010587.6| Homo sapiens chromosome 5 clone CTC-394G3, complete sequence
          Length = 94536

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    aaaagagaagaaaactaaaga 81
             |||||||||||||||||||||
Sbjct: 84419 aaaagagaagaaaactaaaga 84439
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>gb|AC010372.6| Homo sapiens chromosome 5 clone CTD-2049O16, complete sequence
          Length = 125174

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    aaaagagaagaaaactaaaga 81
             |||||||||||||||||||||
Sbjct: 82293 aaaagagaagaaaactaaaga 82273
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 53       gttgtgacaaaagagaagaaaacta 77
                ||||||| |||||||||||||||||
Sbjct: 19190809 gttgtgaaaaaagagaagaaaacta 19190785
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>gb|AY662620.1| Aspidoscelis tigris recombination activating gene 1 (RAG-1) gene,
           partial cds
          Length = 2904

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  ttccaacagttgtgacaaaa 64
           ||||||||||||||||||||
Sbjct: 456 ttccaacagttgtgacaaaa 437
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>gb|AC134426.20| Mus musculus chromosome 1, clone RP24-342A12, complete sequence
          Length = 196208

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    ttgtgacaaaagagaagaaa 73
             ||||||||||||||||||||
Sbjct: 24367 ttgtgacaaaagagaagaaa 24348
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>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
               sequence
          Length = 1194300

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 208     gccgacctgctcgaggaacttggtgagg 235
               |||||||||||| |||| ||||||||||
Sbjct: 1134731 gccgacctgctccaggatcttggtgagg 1134704
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>gb|AY426175.1| Cryptococcus neoformans var. neoformans Sec53p (SEC53) gene, complete
            cds
          Length = 3185

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 208  gccgacctgctcgaggaacttggtgagg 235
            |||||||||||| |||| ||||||||||
Sbjct: 1405 gccgacctgctccaggatcttggtgagg 1378
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>gb|DQ200395.1| Solanum tuberosum clone 070D08 unknown mRNA
          Length = 1061

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 59 acaaaagagaagaaaactaaagaa 82
          ||||||||||||||||||| ||||
Sbjct: 37 acaaaagagaagaaaactacagaa 14
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>ref|XM_580523.2| PREDICTED: Bos taurus similar to cutaneous T-cell lymphoma tumor
            antigen se70-2 (LOC504409), mRNA
          Length = 5010

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   gacaaaagagaagaaaacta 77
            ||||||||||||||||||||
Sbjct: 3129 gacaaaagagaagaaaacta 3148
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>gb|AY307215.1| Zoothera dauma recombination-activating  protein 1 (Rag-1) gene,
           partial cds
          Length = 2872

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  tccaacagttgtgacaaaag 65
           ||||||||||||||||||||
Sbjct: 440 tccaacagttgtgacaaaag 421
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>gb|AY307214.1| Turdus philomelos recombination-activating  protein 1 (Rag-1) gene,
           partial cds
          Length = 2872

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  tccaacagttgtgacaaaag 65
           ||||||||||||||||||||
Sbjct: 440 tccaacagttgtgacaaaag 421
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>gb|AY307206.1| Platycichla leucops recombination-activating  protein 1 (Rag-1)
           gene, partial cds
          Length = 2872

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  tccaacagttgtgacaaaag 65
           ||||||||||||||||||||
Sbjct: 440 tccaacagttgtgacaaaag 421
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>gb|AY307190.1| Entomodestes leucotis recombination-activating  protein 1 (Rag-1)
           gene, partial cds
          Length = 2872

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  tccaacagttgtgacaaaag 65
           ||||||||||||||||||||
Sbjct: 440 tccaacagttgtgacaaaag 421
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>gb|AY307184.1| Catharus guttatus recombination-activating  protein 1 (Rag-1) gene,
           partial cds
          Length = 2849

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  tccaacagttgtgacaaaag 65
           ||||||||||||||||||||
Sbjct: 440 tccaacagttgtgacaaaag 421
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>ref|XM_844200.1| PREDICTED: Canis familiaris similar to cutaneous T-cell lymphoma
            tumor antigen se70-2, transcript variant 3 (LOC476955),
            mRNA
          Length = 4439

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   gacaaaagagaagaaaacta 77
            ||||||||||||||||||||
Sbjct: 3200 gacaaaagagaagaaaacta 3219
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>ref|XM_534155.2| PREDICTED: Canis familiaris similar to cutaneous T-cell lymphoma
            tumor antigen se70-2, transcript variant 2 (LOC476955),
            mRNA
          Length = 4388

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   gacaaaagagaagaaaacta 77
            ||||||||||||||||||||
Sbjct: 3149 gacaaaagagaagaaaacta 3168
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>ref|XM_853223.1| PREDICTED: Canis familiaris similar to cutaneous T-cell lymphoma
            tumor antigen se70-2, transcript variant 10 (LOC476955),
            mRNA
          Length = 4340

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   gacaaaagagaagaaaacta 77
            ||||||||||||||||||||
Sbjct: 3101 gacaaaagagaagaaaacta 3120
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>ref|XM_853183.1| PREDICTED: Canis familiaris similar to cutaneous T-cell lymphoma
            tumor antigen se70-2, transcript variant 9 (LOC476955),
            mRNA
          Length = 4280

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   gacaaaagagaagaaaacta 77
            ||||||||||||||||||||
Sbjct: 3041 gacaaaagagaagaaaacta 3060
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>ref|XM_853101.1| PREDICTED: Canis familiaris similar to cutaneous T-cell lymphoma
            tumor antigen se70-2, transcript variant 7 (LOC476955),
            mRNA
          Length = 4235

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   gacaaaagagaagaaaacta 77
            ||||||||||||||||||||
Sbjct: 3128 gacaaaagagaagaaaacta 3147
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>ref|XM_853024.1| PREDICTED: Canis familiaris similar to cutaneous T-cell lymphoma
            tumor antigen se70-2, transcript variant 5 (LOC476955),
            mRNA
          Length = 4367

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   gacaaaagagaagaaaacta 77
            ||||||||||||||||||||
Sbjct: 3128 gacaaaagagaagaaaacta 3147
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>ref|XM_572212.1| Cryptococcus neoformans var. neoformans JEC21 phosphomannomutase
           (CNH00170) partial mRNA
          Length = 1088

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 208 gccgacctgctcgaggaacttggtgagg 235
           |||||||||||| |||| ||||||||||
Sbjct: 239 gccgacctgctccaggatcttggtgagg 212
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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   gggtggccagcggcggcacg 203
             ||||||||||||||||||||
Sbjct: 82828 gggtggccagcggcggcacg 82847
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>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
             complete sequence
          Length = 151506

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   ggtggccagcggcggcacga 204
             ||||||||||||||||||||
Sbjct: 68542 ggtggccagcggcggcacga 68523
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>gb|AC162880.4| Mus musculus chromosome 1, clone RP24-275N11, complete sequence
          Length = 164201

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ttgtgacaaaagagaagaaa 73
              ||||||||||||||||||||
Sbjct: 116587 ttgtgacaaaagagaagaaa 116568
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>emb|CR387927.9| Zebrafish DNA sequence from clone CH211-260P11 in linkage group 14,
              complete sequence
          Length = 149672

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 107    cttctctggggtttggtttggatg 130
              ||||| ||||||||||||||||||
Sbjct: 121246 cttctgtggggtttggtttggatg 121223
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>gb|AC026689.6| Homo sapiens chromosome 5 clone CTB-55A14, complete sequence
          Length = 215150

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    atcttctgctccttgagctc 285
              ||||||||||||||||||||
Sbjct: 127990 atcttctgctccttgagctc 127971
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>gb|AC118549.2| Homo sapiens chromosome 1 clone RP11-306I4, complete sequence
          Length = 65280

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   ttctctggggtttggtttgg 127
             ||||||||||||||||||||
Sbjct: 12468 ttctctggggtttggtttgg 12487
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>gb|AY057039.1| Turdus falklandii recombination activating protein 1 (RAG-1) gene,
           partial cds
          Length = 2872

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  tccaacagttgtgacaaaag 65
           ||||||||||||||||||||
Sbjct: 440 tccaacagttgtgacaaaag 421
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>dbj|AK089469.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F730036B02
            product:unclassifiable, full insert sequence
          Length = 2622

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  tcgtcttctctggggtttgg 122
            ||||||||||||||||||||
Sbjct: 2366 tcgtcttctctggggtttgg 2347
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      ggtggccagcggcggcacga 204
                ||||||||||||||||||||
Sbjct: 33296281 ggtggccagcggcggcacga 33296262
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 217      ctcgaggaacttggtgaggc 236
                ||||||||||||||||||||
Sbjct: 18508272 ctcgaggaacttggtgaggc 18508291
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>gb|AY443305.1| Muscicapa ferruginea recombination activating protein 1 (RAG1)
           gene, partial cds
          Length = 2869

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  tccaacagttgtgacaaaag 65
           ||||||||||||||||||||
Sbjct: 437 tccaacagttgtgacaaaag 418
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>gb|AY443265.1| Catharus ustulatus recombination activating protein 1 (RAG1) gene,
           partial cds
          Length = 2872

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  tccaacagttgtgacaaaag 65
           ||||||||||||||||||||
Sbjct: 440 tccaacagttgtgacaaaag 421
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>gb|AY443263.1| Batis mixta recombination activating protein 1 (RAG1) gene, partial
           cds
          Length = 2872

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  tccaacagttgtgacaaaag 65
           ||||||||||||||||||||
Sbjct: 440 tccaacagttgtgacaaaag 421
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>gb|AC087564.6| Homo sapiens chromosome 16 clone RP11-437L7, complete sequence
          Length = 157233

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    gtgacaaaagagaagaaaac 75
             ||||||||||||||||||||
Sbjct: 87713 gtgacaaaagagaagaaaac 87694
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>gb|AF262043.1|T26D3 Arabidopsis thaliana BAC T26D3
          Length = 81223

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    tgtgacaaaagagaagaaaa 74
             ||||||||||||||||||||
Sbjct: 45426 tgtgacaaaagagaagaaaa 45407
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>dbj|AP005773.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0085C03
          Length = 188905

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   ctcgaggaacttggtgaggc 236
             ||||||||||||||||||||
Sbjct: 91155 ctcgaggaacttggtgaggc 91174
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>gb|U68461.1|SAU68461 Striga asiatica actin (SA-ACT1) gene, complete cds
          Length = 2139

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 66   agaagaaaactaaagaacaagcat 89
            |||||||||| |||||||||||||
Sbjct: 1857 agaagaaaacaaaagaacaagcat 1834
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>emb|AL121992.24|HSDJ680D5 Human DNA sequence from clone RP4-680D5 on chromosome 1p36.13-36.31
              Contains the 3' end of the gene for a novel DnaJ
              domain-containing protein (KIAA0962, FLJ13743, FLJ12468),
              the AGMAT gene for agmatine ureohydrolase (agmatinase), a
              novel gene (FLJ34180), a novel pseudogene similar to Mus
              musculus ethanol induced 6 (Etohi6), a CD24 antigen (small
              cell lung carcinoma cluster 4 antigen) (CD24) pseudogene,
              the gene for DNA-damage inducible protein 2 (DDI2), the
              RSC1A1 gene for regulatory solute carrier protein family 1
              member 1 and the 5' end of the gene for a novel RUN and PH
              domain-containing protein (KIAA0842), complete sequence
          Length = 170399

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 59     acaaaagagaagaaaactaaagaacaag 86
              ||||||||||||||||||| || |||||
Sbjct: 109627 acaaaagagaagaaaactagaggacaag 109600
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>gb|AC140250.3| Mus musculus BAC clone RP24-288J3 from 1, complete sequence
          Length = 163490

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   tcgtcttctctggggtttgg 122
             ||||||||||||||||||||
Sbjct: 64676 tcgtcttctctggggtttgg 64657
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>gb|U51897.1|MDU51897 Monodelphis domestica recombination-activating protein (RAG-1)
           gene, partial cds
          Length = 3336

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  ttccaacagttgtgacaaaa 64
           ||||||||||||||||||||
Sbjct: 749 ttccaacagttgtgacaaaa 730
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>gb|U88239.1|TSU88239 Trichinella spiralis hypothetical ORF 17.20 mRNA, partial cds
          Length = 660

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 62 aaagagaagaaaactaaaga 81
          ||||||||||||||||||||
Sbjct: 47 aaagagaagaaaactaaaga 28
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>gb|AC101992.11| Mus musculus chromosome 3, clone RP24-377J3, complete sequence
          Length = 191967

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 59    acaaaagagaagaaaactaaagaa 82
             |||||||||||||||| |||||||
Sbjct: 46613 acaaaagagaagaaaagtaaagaa 46636


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,051,718
Number of Sequences: 3902068
Number of extensions: 3051718
Number of successful extensions: 68926
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68646
Number of HSP's gapped (non-prelim): 275
length of query: 296
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 274
effective length of database: 17,147,199,772
effective search space: 4698332737528
effective search space used: 4698332737528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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