ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast73c10 |
|---|---|
| Clone Library Name | barley_pub |
>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic| protein 2.6) (OsPIP2.6) Length = 282 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/20 (100%), Positives = 20/20 (100%) Frame = -2 Query: 433 LAAAAYHQYILRAAAIKALG 374 LAAAAYHQYILRAAAIKALG Sbjct: 255 LAAAAYHQYILRAAAIKALG 274
>PIP1_ATRCA (P42767) Aquaporin PIP-type| Length = 282 Score = 40.8 bits (94), Expect = 0.001 Identities = 19/20 (95%), Positives = 20/20 (100%) Frame = -2 Query: 433 LAAAAYHQYILRAAAIKALG 374 LAAAAYHQY+LRAAAIKALG Sbjct: 255 LAAAAYHQYVLRAAAIKALG 274
>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)| (Salt stress-induced major intrinsic protein) Length = 280 Score = 40.0 bits (92), Expect = 0.002 Identities = 19/20 (95%), Positives = 20/20 (100%) Frame = -2 Query: 433 LAAAAYHQYILRAAAIKALG 374 LAAAAYHQYILRA+AIKALG Sbjct: 253 LAAAAYHQYILRASAIKALG 272
>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic| protein 3b) (PIP3b) Length = 278 Score = 38.9 bits (89), Expect = 0.005 Identities = 19/19 (100%), Positives = 19/19 (100%) Frame = -2 Query: 433 LAAAAYHQYILRAAAIKAL 377 LAAAAYHQYILRAAAIKAL Sbjct: 251 LAAAAYHQYILRAAAIKAL 269
>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic| protein 2.4) Length = 291 Score = 35.8 bits (81), Expect = 0.046 Identities = 17/19 (89%), Positives = 18/19 (94%) Frame = -2 Query: 430 AAAAYHQYILRAAAIKALG 374 AAA YHQ+ILRAAAIKALG Sbjct: 261 AAAFYHQFILRAAAIKALG 279
>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic| protein 2a) (PIP2a) (OsPIP2.1) Length = 290 Score = 34.3 bits (77), Expect = 0.13 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = -2 Query: 427 AAAYHQYILRAAAIKALG 374 AA YHQYILRA AIKALG Sbjct: 267 AAFYHQYILRAGAIKALG 284
>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic| protein 2d) (PIP2d) Length = 286 Score = 32.3 bits (72), Expect = 0.51 Identities = 14/18 (77%), Positives = 16/18 (88%) Frame = -2 Query: 427 AAAYHQYILRAAAIKALG 374 AA YHQ++LRA AIKALG Sbjct: 261 AAFYHQFVLRAGAIKALG 278
>SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4| Length = 804 Score = 30.8 bits (68), Expect = 1.5 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +1 Query: 310 YCHRCIKLLAGVLSCSGCS 366 YCHRC+K + C GCS Sbjct: 295 YCHRCLKHTLATVPCDGCS 313
>SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4| Length = 804 Score = 30.8 bits (68), Expect = 1.5 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +1 Query: 310 YCHRCIKLLAGVLSCSGCS 366 YCHRC+K + C GCS Sbjct: 295 YCHRCLKHTLATVPCDGCS 313
>SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4| Length = 742 Score = 30.4 bits (67), Expect = 1.9 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +1 Query: 310 YCHRCIKLLAGVLSCSGCS 366 YCH C+K L + C GCS Sbjct: 294 YCHHCLKQLLASIPCCGCS 312
>UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-recognin (EC| 6.-.-.-) (Ubiquitin-protein ligase E3-alpha) Length = 1927 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -1 Query: 368 PEQPEQLSTPANNLMQRWQYCSSCPSGAS*PHKRTGFVLAVLLLHRAHP 222 P +P+ TP + L+ S P+ A PH T F V L + A P Sbjct: 1560 PPRPKLAQTPGSPLLSAPSTSSFTPAPAQIPHSGTNFAFLVQLFNPAGP 1608
>PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane intrinsic| protein 2.3) (OsPIP2.3) Length = 290 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = -2 Query: 427 AAAYHQYILRAAAIK 383 AAAYHQY+LRA+A K Sbjct: 267 AAAYHQYVLRASAAK 281
>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic| protein 2e) (PIP2e) Length = 289 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -2 Query: 427 AAAYHQYILRAAAIKALG 374 AA YHQ++LRA A+KA G Sbjct: 261 AAFYHQFVLRAGAMKAYG 278
>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic| protein 2.2) (OsPIP2.2) Length = 288 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = -2 Query: 427 AAAYHQYILRAAAIK 383 AAAYHQY+LRA+A K Sbjct: 266 AAAYHQYVLRASAAK 280
>CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)| Length = 735 Score = 28.9 bits (63), Expect = 5.7 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +2 Query: 170 WWPLSLSLTCMHRH*TRPDGHD 235 WWP L+L+ +H+H + + HD Sbjct: 31 WWPNQLNLSILHQHDRKTNPHD 52
>SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4| Length = 799 Score = 28.5 bits (62), Expect = 7.4 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = +1 Query: 310 YCHRCIKLLAGVLSCSGCS 366 YCHRC+K + C CS Sbjct: 295 YCHRCLKHTLATVPCGSCS 313
>TELT_MOUSE (O70548) Telethonin (Titin cap protein)| Length = 167 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/39 (33%), Positives = 17/39 (43%) Frame = +1 Query: 205 QTLNEAGWARWRSSTANTKPVRLCG*LAPDGHEEQYCHR 321 Q EA WA W+ T +T+P C D + HR Sbjct: 15 QERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHR 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,147,334 Number of Sequences: 219361 Number of extensions: 1026656 Number of successful extensions: 2587 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2506 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2586 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
