ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast73b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CORTO_DROME (P41046) Centrosomal and chromosomal factor (CCF) (C... 30 1.9
2NSE4_SCHPO (Q6BDR8) Non-structural maintenance of chromosome ele... 28 7.2

>CORTO_DROME (P41046) Centrosomal and chromosomal factor (CCF)|
           (Chromocentrosomin)
          Length = 550

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 19  QGSQMQLLITHCSFDHHHPRSTTPMIHSFLIQEKNITLRQQNTSKKVVRLHQPITTSS 192
           Q  Q Q   +     HHH +    M H+ +   +   L+QQ   +     HQP  TSS
Sbjct: 28  QQQQQQQQHSQTQQQHHHQQQQQHMYHAAVAAHQQQLLQQQQQQQHHRHHHQPANTSS 85



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>NSE4_SCHPO (Q6BDR8) Non-structural maintenance of chromosome element 4|
           (Non-SMC element 4) (DNA repair protein rad62)
          Length = 300

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
 Frame = +1

Query: 106 LIQEKNITLRQQNTSKKVVRL------HQPITTSSFL 198
           ++ E+NIT ++ NT+K V+ +      HQP+    F+
Sbjct: 166 MLNERNITTQENNTTKNVLHISRLLQAHQPVNFLKFI 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,761,937
Number of Sequences: 219361
Number of extensions: 649372
Number of successful extensions: 1341
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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