ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast73b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF411228.1|AF411228 Hordeum vulgare ascorbate peroxidase mRNA... 359 3e-96
2gb|BT009090.1| Triticum aestivum clone wkm2c.pk0002.f7:fis, full... 204 1e-49
3emb|AL137857.29| Human DNA sequence from clone RP5-1166H10 on ch... 44 0.23
4ref|NM_202299.1| Arabidopsis thaliana unknown protein AT1G54575 ... 42 0.90
5gb|AY773826.1| Arabidopsis thaliana clone pENTR221-At1g54575 hyp... 42 0.90
6gb|AY735542.1| Arabidopsis thaliana hypothetical protein AT1G545... 42 0.90
7gb|BT015723.1| Arabidopsis thaliana At1g54575 gene, complete cds 42 0.90
8gb|BT015058.1| Arabidopsis thaliana At1g54575 gene, complete cds 42 0.90
9dbj|AK221685.1| Arabidopsis thaliana mRNA for hypothetical prote... 42 0.90
10gb|AC005388.1|T22H22 Sequence of BAC T22H22 from Arabidopsis tha... 42 0.90
11gb|AC019176.4|AC019176 Homo sapiens BAC clone RP11-221H10 from 8... 42 0.90
12emb|BX818219.1|CNS0AE3B Arabidopsis thaliana Full-length cDNA Co... 42 0.90
13emb|BX818269.1|CNS0AB1D Arabidopsis thaliana Full-length cDNA Co... 42 0.90
14emb|BX817787.1|CNS0AAX6 Arabidopsis thaliana Full-length cDNA Co... 42 0.90
15emb|AL136293.5|CNS01DVX Human chromosome 14 DNA sequence BAC C-2... 42 0.90 
>gb|AF411228.1|AF411228 Hordeum vulgare ascorbate peroxidase mRNA, complete cds
          Length = 1138

 Score =  359 bits (181), Expect = 3e-96
 Identities = 184/185 (99%)
 Strand = Plus / Minus

                                                                        
Query: 22   catttcgtcctcgacagggaaaaacaaccggaaaggaactacataacacttagcggttca 81
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 catttcgttctcgacagggaaaaacaaccggaaaggaactacataacacttagcggttca 1057

                                                                        
Query: 82   cactacaagcaggtccatcacaagatacgaggcgtcaaaagcaaaacaatgcaacacccc 141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 cactacaagcaggtccatcacaagatacgaggcgtcaaaagcaaaacaatgcaacacccc 997

                                                                        
Query: 142  atcgaccgaccgatctaatccaaatccagacaaacacatgacatggccactgggccgacg 201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  atcgaccgaccgatctaatccaaatccagacaaacacatgacatggccactgggccgacg 937

                 
Query: 202  acaga 206
            |||||
Sbjct: 936  acaga 932
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>gb|BT009090.1| Triticum aestivum clone wkm2c.pk0002.f7:fis, full insert mRNA
           sequence
          Length = 973

 Score =  204 bits (103), Expect = 1e-49
 Identities = 152/167 (91%), Gaps = 6/167 (3%)
 Strand = Plus / Minus

                                                                       
Query: 24  tttcgtcctcgacagggaaaaa-----caaccggaaaggaactacataacacttagcggt 78
           ||||||||||||||||||| ||     ||||||||||||||||||||||||||| || ||
Sbjct: 901 tttcgtcctcgacagggaataacaattcaaccggaaaggaactacataacacttggcagt 842

                                                                       
Query: 79  tcacactacaagcaggtccatcacaagatacgaggcgtcaaaagcaaaacaatgcaacac 138
           ||| |||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 841 tcatactacaagcacgcccatcacaagacacgaggcgtc-aaagcaaaacaatgcaacac 783

                                                          
Query: 139 cccatcgaccgaccgatctaatccaaatccagacaaacacatgacat 185
           |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 782 cccatcgaccgacccatctaatccaagtccagacaaacacatgacat 736
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>emb|AL137857.29| Human DNA sequence from clone RP5-1166H10 on chromosome 1p33-35.1
             Contains the MATN1 gene for matrilin 1 cartilage matrix
             protein, a novel gene (FLJ46197, FLJ33163), the 3' end of
             the gene for Lysosomal-associated multispanning membrane
             protein-5 (LAPTM5) and a CpG island, complete sequence
          Length = 152042

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 120   aagcaaaacaatgcaacacccc 141
             ||||||||||||||||||||||
Sbjct: 34235 aagcaaaacaatgcaacacccc 34256
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>ref|NM_202299.1| Arabidopsis thaliana unknown protein AT1G54575 mRNA, complete cds
          Length = 638

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 gtcaaaagcaaaacaatgcaacacc 139
           |||||||||||||||||| ||||||
Sbjct: 221 gtcaaaagcaaaacaatgaaacacc 245
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>gb|AY773826.1| Arabidopsis thaliana clone pENTR221-At1g54575 hypothetical protein
           (At1g54575) gene, complete cds
          Length = 309

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 gtcaaaagcaaaacaatgcaacacc 139
           |||||||||||||||||| ||||||
Sbjct: 188 gtcaaaagcaaaacaatgaaacacc 212
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>gb|AY735542.1| Arabidopsis thaliana hypothetical protein AT1G54575 mRNA, complete
           cds
          Length = 670

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 gtcaaaagcaaaacaatgcaacacc 139
           |||||||||||||||||| ||||||
Sbjct: 234 gtcaaaagcaaaacaatgaaacacc 258
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>gb|BT015723.1| Arabidopsis thaliana At1g54575 gene, complete cds
          Length = 309

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 gtcaaaagcaaaacaatgcaacacc 139
           |||||||||||||||||| ||||||
Sbjct: 188 gtcaaaagcaaaacaatgaaacacc 212
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>gb|BT015058.1| Arabidopsis thaliana At1g54575 gene, complete cds
          Length = 573

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 gtcaaaagcaaaacaatgcaacacc 139
           |||||||||||||||||| ||||||
Sbjct: 198 gtcaaaagcaaaacaatgaaacacc 222
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>dbj|AK221685.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL14-90-M11
          Length = 654

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 gtcaaaagcaaaacaatgcaacacc 139
           |||||||||||||||||| ||||||
Sbjct: 234 gtcaaaagcaaaacaatgaaacacc 258
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>gb|AC005388.1|T22H22 Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 87768

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 115   gtcaaaagcaaaacaatgcaacacc 139
             |||||||||||||||||| ||||||
Sbjct: 15805 gtcaaaagcaaaacaatgaaacacc 15829
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>gb|AC019176.4|AC019176 Homo sapiens BAC clone RP11-221H10 from 8, complete sequence
          Length = 170680

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 115   gtcaaaagcaaaacaatgcaa 135
             |||||||||||||||||||||
Sbjct: 63442 gtcaaaagcaaaacaatgcaa 63462
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>emb|BX818219.1|CNS0AE3B Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL67ZF04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 631

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 gtcaaaagcaaaacaatgcaacacc 139
           |||||||||||||||||| ||||||
Sbjct: 214 gtcaaaagcaaaacaatgaaacacc 238
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>emb|BX818269.1|CNS0AB1D Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL6ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 599

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 gtcaaaagcaaaacaatgcaacacc 139
           |||||||||||||||||| ||||||
Sbjct: 205 gtcaaaagcaaaacaatgaaacacc 229
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>emb|BX817787.1|CNS0AAX6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL41ZD08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 630

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 gtcaaaagcaaaacaatgcaacacc 139
           |||||||||||||||||| ||||||
Sbjct: 221 gtcaaaagcaaaacaatgaaacacc 245
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>emb|AL136293.5|CNS01DVX Human chromosome 14 DNA sequence BAC C-2555C10 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 226035

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   ccaaatccagacaaacacatg 181
             |||||||||||||||||||||
Sbjct: 48820 ccaaatccagacaaacacatg 48800


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,417,814
Number of Sequences: 3902068
Number of extensions: 1417814
Number of successful extensions: 28057
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28039
Number of HSP's gapped (non-prelim): 17
length of query: 273
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 251
effective length of database: 17,147,199,772
effective search space: 4303947142772
effective search space used: 4303947142772
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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