ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast73a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X05167.1|HVLEU Barley gene for thiol protease aleurain 202 2e-49
2gb|AC115876.18| Mus musculus chromosome 1, clone RP24-356G6, com... 44 0.088
3dbj|AP001528.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 0.35
4gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 1.4
5gb|AC123540.3| Oryctolagus cuniculus clone LB1-151A4, complete s... 40 1.4
6gb|AC110081.3| Homo sapiens BAC clone RP11-453M2 from 4, complet... 40 1.4
7gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 40 1.4
8gb|AC092624.2| Homo sapiens BAC clone RP11-261J9 from 2, complet... 40 1.4
9ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) ... 40 1.4
10emb|AL671895.9| Mouse DNA sequence from clone RP23-342E4 on chro... 40 1.4
11dbj|AB019438.1| Homo sapiens DNA for immunoglobulin heavy-chain ... 40 1.4
12gb|AE006833.1| Sulfolobus solfataricus P2 section 192 of 272 of ... 38 5.4
13gb|AC145991.2| Pan troglodytes BAC clone RP43-170F9 from 7, comp... 38 5.4
14gb|AC146008.3| Pan troglodytes BAC clone RP43-13N15 from 7, comp... 38 5.4
15gb|AC148239.7| Medicago truncatula clone mth2-5d7, complete sequ... 38 5.4
16gb|AC016587.9| Homo sapiens chromosome 19 clone CTD-2632B17, com... 38 5.4
17ref|NM_064363.2| Caenorhabditis elegans Y38F1A.6 (Y38F1A.6) mRNA... 38 5.4
18gb|AC010704.6|AC010704 Arabidopsis thaliana chromosome 1 BAC T5M... 38 5.4
19gb|AC078898.5|AC078898 Arabidopsis thaliana chromosome 1 BAC F2P... 38 5.4
20dbj|AP001132.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 5.4
21gb|L12254.1|BCCACTINA Bactrocera dorsalis (clones pBdA2.1 and pB... 38 5.4

>emb|X05167.1|HVLEU Barley gene for thiol protease aleurain
          Length = 5372

 Score =  202 bits (102), Expect = 2e-49
 Identities = 114/118 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaactatgaaggggccattttatttgtcccggaaataaaatgtcgtaaacatacatgaaa 60
            |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 5316 gaactatgaatgggccattttatttgtcccggaaataaaatgtcgtagacatacatgaga 5257

                                                                      
Query: 61   aaccctaataaatggctggatcacctacatatatagccatacaaccatacagaggaag 118
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5256 aaccctaataaattgctggatcacctacatatatagccatacaaccatacagaggaag 5199



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>gb|AC115876.18| Mus musculus chromosome 1, clone RP24-356G6, complete sequence
          Length = 163698

 Score = 44.1 bits (22), Expect = 0.088
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 5     tatgaaggggccattttatttgtccc 30
             ||||||||||||||||||| ||||||
Sbjct: 85360 tatgaaggggccattttatctgtccc 85385



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>dbj|AP001528.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736K20, complete
             sequence
          Length = 155523

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 79    gatcacctacatatatagccataca 103
             |||||||||||||||||| ||||||
Sbjct: 20157 gatcacctacatatatagtcataca 20181



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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 61      aaccctaataaatggctgga 80
               ||||||||||||||||||||
Sbjct: 1602831 aaccctaataaatggctgga 1602812



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>gb|AC123540.3| Oryctolagus cuniculus clone LB1-151A4, complete sequence
          Length = 187337

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    atgaaaaaccctaataaatg 74
             ||||||||||||||||||||
Sbjct: 70046 atgaaaaaccctaataaatg 70065



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>gb|AC110081.3| Homo sapiens BAC clone RP11-453M2 from 4, complete sequence
          Length = 44837

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 87    acatatatagccatacaaccatacagag 114
             |||||||||||||||||  |||||||||
Sbjct: 21299 acatatatagccatacacacatacagag 21326



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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      atgaaaaaccctaataaatg 74
               ||||||||||||||||||||
Sbjct: 1313022 atgaaaaaccctaataaatg 1313041



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>gb|AC092624.2| Homo sapiens BAC clone RP11-261J9 from 2, complete sequence
          Length = 101158

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    ctggatcacctacatatata 95
             ||||||||||||||||||||
Sbjct: 16505 ctggatcacctacatatata 16486



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>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14
          Length = 1279711

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     ataaaatgtcgtaaacatac 54
              ||||||||||||||||||||
Sbjct: 304455 ataaaatgtcgtaaacatac 304474



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>emb|AL671895.9| Mouse DNA sequence from clone RP23-342E4 on chromosome 4, complete
              sequence
          Length = 200368

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      gaaggggccattttatttgt 27
              ||||||||||||||||||||
Sbjct: 187364 gaaggggccattttatttgt 187383



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>dbj|AB019438.1| Homo sapiens DNA for immunoglobulin heavy-chain variable region, complete
              sequence, 2 of 5
          Length = 200000

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     ataaaatgtcgtaaacatac 54
              ||||||||||||||||||||
Sbjct: 104455 ataaaatgtcgtaaacatac 104474



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>gb|AE006833.1| Sulfolobus solfataricus P2 section 192 of 272 of the complete genome
          Length = 10029

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 42   gtcgtaaacatacatgaaa 60
            |||||||||||||||||||
Sbjct: 7793 gtcgtaaacatacatgaaa 7811



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>gb|AC145991.2| Pan troglodytes BAC clone RP43-170F9 from 7, complete sequence
          Length = 173879

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 45    gtaaacatacatgaaaaac 63
             |||||||||||||||||||
Sbjct: 19834 gtaaacatacatgaaaaac 19852



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>gb|AC146008.3| Pan troglodytes BAC clone RP43-13N15 from 7, complete sequence
          Length = 151195

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 45   gtaaacatacatgaaaaac 63
            |||||||||||||||||||
Sbjct: 8326 gtaaacatacatgaaaaac 8308



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>gb|AC148239.7| Medicago truncatula clone mth2-5d7, complete sequence
          Length = 103609

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 55    atgaaaaaccctaataaat 73
             |||||||||||||||||||
Sbjct: 77342 atgaaaaaccctaataaat 77324



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>gb|AC016587.9| Homo sapiens chromosome 19 clone CTD-2632B17, complete sequence
          Length = 155221

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    atacatgaaaaaccctaat 69
             |||||||||||||||||||
Sbjct: 79244 atacatgaaaaaccctaat 79262



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>ref|NM_064363.2| Caenorhabditis elegans Y38F1A.6 (Y38F1A.6) mRNA, complete cds
          Length = 1592

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 32 gaaataaaatgtcgtaaac 50
          |||||||||||||||||||
Sbjct: 96 gaaataaaatgtcgtaaac 78



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>gb|AC010704.6|AC010704 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence,
            complete sequence
          Length = 103353

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 47   aaacatacatgaaaaaccctaat 69
            |||||||||||||||||| ||||
Sbjct: 2416 aaacatacatgaaaaaccataat 2438



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>gb|AC078898.5|AC078898 Arabidopsis thaliana chromosome 1 BAC F2P24 genomic sequence, complete
             sequence
          Length = 46855

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 47    aaacatacatgaaaaaccctaat 69
             |||||||||||||||||| ||||
Sbjct: 42310 aaacatacatgaaaaaccataat 42332



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>dbj|AP001132.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-712D22, complete
             sequences
          Length = 170371

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    catacatgaaaaaccctaa 68
             |||||||||||||||||||
Sbjct: 60854 catacatgaaaaaccctaa 60836



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>gb|L12254.1|BCCACTINA Bactrocera dorsalis (clones pBdA2.1 and pBdA2) muscle-specific actin
            gene, complete cds
          Length = 4230

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 32   gaaataaaatgtcgtaaacatac 54
            |||||||||||| ||||||||||
Sbjct: 1410 gaaataaaatgtggtaaacatac 1432


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,362,638
Number of Sequences: 3902068
Number of extensions: 1362638
Number of successful extensions: 95125
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95062
Number of HSP's gapped (non-prelim): 63
length of query: 118
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 97
effective length of database: 17,151,101,840
effective search space: 1663656878480
effective search space used: 1663656878480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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