| Clone Name | rbast73a08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X05167.1|HVLEU Barley gene for thiol protease aleurain Length = 5372 Score = 202 bits (102), Expect = 2e-49 Identities = 114/118 (96%) Strand = Plus / Minus Query: 1 gaactatgaaggggccattttatttgtcccggaaataaaatgtcgtaaacatacatgaaa 60 |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct: 5316 gaactatgaatgggccattttatttgtcccggaaataaaatgtcgtagacatacatgaga 5257 Query: 61 aaccctaataaatggctggatcacctacatatatagccatacaaccatacagaggaag 118 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5256 aaccctaataaattgctggatcacctacatatatagccatacaaccatacagaggaag 5199
>gb|AC115876.18| Mus musculus chromosome 1, clone RP24-356G6, complete sequence Length = 163698 Score = 44.1 bits (22), Expect = 0.088 Identities = 25/26 (96%) Strand = Plus / Plus Query: 5 tatgaaggggccattttatttgtccc 30 ||||||||||||||||||| |||||| Sbjct: 85360 tatgaaggggccattttatctgtccc 85385
>dbj|AP001528.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736K20, complete sequence Length = 155523 Score = 42.1 bits (21), Expect = 0.35 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 gatcacctacatatatagccataca 103 |||||||||||||||||| |||||| Sbjct: 20157 gatcacctacatatatagtcataca 20181
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 aaccctaataaatggctgga 80 |||||||||||||||||||| Sbjct: 1602831 aaccctaataaatggctgga 1602812
>gb|AC123540.3| Oryctolagus cuniculus clone LB1-151A4, complete sequence Length = 187337 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 atgaaaaaccctaataaatg 74 |||||||||||||||||||| Sbjct: 70046 atgaaaaaccctaataaatg 70065
>gb|AC110081.3| Homo sapiens BAC clone RP11-453M2 from 4, complete sequence Length = 44837 Score = 40.1 bits (20), Expect = 1.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 87 acatatatagccatacaaccatacagag 114 ||||||||||||||||| ||||||||| Sbjct: 21299 acatatatagccatacacacatacagag 21326
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 atgaaaaaccctaataaatg 74 |||||||||||||||||||| Sbjct: 1313022 atgaaaaaccctaataaatg 1313041
>gb|AC092624.2| Homo sapiens BAC clone RP11-261J9 from 2, complete sequence Length = 101158 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ctggatcacctacatatata 95 |||||||||||||||||||| Sbjct: 16505 ctggatcacctacatatata 16486
>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14 Length = 1279711 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ataaaatgtcgtaaacatac 54 |||||||||||||||||||| Sbjct: 304455 ataaaatgtcgtaaacatac 304474
>emb|AL671895.9| Mouse DNA sequence from clone RP23-342E4 on chromosome 4, complete sequence Length = 200368 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gaaggggccattttatttgt 27 |||||||||||||||||||| Sbjct: 187364 gaaggggccattttatttgt 187383
>dbj|AB019438.1| Homo sapiens DNA for immunoglobulin heavy-chain variable region, complete sequence, 2 of 5 Length = 200000 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ataaaatgtcgtaaacatac 54 |||||||||||||||||||| Sbjct: 104455 ataaaatgtcgtaaacatac 104474
>gb|AE006833.1| Sulfolobus solfataricus P2 section 192 of 272 of the complete genome Length = 10029 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 gtcgtaaacatacatgaaa 60 ||||||||||||||||||| Sbjct: 7793 gtcgtaaacatacatgaaa 7811
>gb|AC145991.2| Pan troglodytes BAC clone RP43-170F9 from 7, complete sequence Length = 173879 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 gtaaacatacatgaaaaac 63 ||||||||||||||||||| Sbjct: 19834 gtaaacatacatgaaaaac 19852
>gb|AC146008.3| Pan troglodytes BAC clone RP43-13N15 from 7, complete sequence Length = 151195 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 gtaaacatacatgaaaaac 63 ||||||||||||||||||| Sbjct: 8326 gtaaacatacatgaaaaac 8308
>gb|AC148239.7| Medicago truncatula clone mth2-5d7, complete sequence Length = 103609 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 55 atgaaaaaccctaataaat 73 ||||||||||||||||||| Sbjct: 77342 atgaaaaaccctaataaat 77324
>gb|AC016587.9| Homo sapiens chromosome 19 clone CTD-2632B17, complete sequence Length = 155221 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 atacatgaaaaaccctaat 69 ||||||||||||||||||| Sbjct: 79244 atacatgaaaaaccctaat 79262
>ref|NM_064363.2| Caenorhabditis elegans Y38F1A.6 (Y38F1A.6) mRNA, complete cds Length = 1592 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 gaaataaaatgtcgtaaac 50 ||||||||||||||||||| Sbjct: 96 gaaataaaatgtcgtaaac 78
>gb|AC010704.6|AC010704 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence, complete sequence Length = 103353 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 aaacatacatgaaaaaccctaat 69 |||||||||||||||||| |||| Sbjct: 2416 aaacatacatgaaaaaccataat 2438
>gb|AC078898.5|AC078898 Arabidopsis thaliana chromosome 1 BAC F2P24 genomic sequence, complete sequence Length = 46855 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 aaacatacatgaaaaaccctaat 69 |||||||||||||||||| |||| Sbjct: 42310 aaacatacatgaaaaaccataat 42332
>dbj|AP001132.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-712D22, complete sequences Length = 170371 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 catacatgaaaaaccctaa 68 ||||||||||||||||||| Sbjct: 60854 catacatgaaaaaccctaa 60836
>gb|L12254.1|BCCACTINA Bactrocera dorsalis (clones pBdA2.1 and pBdA2) muscle-specific actin gene, complete cds Length = 4230 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 gaaataaaatgtcgtaaacatac 54 |||||||||||| |||||||||| Sbjct: 1410 gaaataaaatgtggtaaacatac 1432 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,362,638 Number of Sequences: 3902068 Number of extensions: 1362638 Number of successful extensions: 95125 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95062 Number of HSP's gapped (non-prelim): 63 length of query: 118 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 97 effective length of database: 17,151,101,840 effective search space: 1663656878480 effective search space used: 1663656878480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)