ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast72h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY110599.1| Zea mays CL20165_1 mRNA sequence 48 0.003
2gb|AC102075.7| Mus musculus chromosome 5, clone RP23-389F20, com... 42 0.18
3gb|AC108798.11| Mus musculus chromosome 5, clone RP23-419N6, com... 42 0.18
4emb|AL035258.10|HS1097P24 Human DNA sequence from clone RP5-1097... 38 2.7
5emb|AJ632267.2| Arabidopsis lyrata subsp. petraea gene family (A... 38 2.7
6gb|AC098586.3| Homo sapiens BAC clone RP11-109F18 from 4, comple... 38 2.7

>gb|AY110599.1| Zea mays CL20165_1 mRNA sequence
          Length = 722

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 19  gccgtgtacacaacgaagttcaccgcgccgatcccagcccacagccagaagt 70
           ||||||||||| ||| |||||||| | | |||||| | ||||||||||||||
Sbjct: 417 gccgtgtacacgacgtagttcaccacactgatccccgtccacagccagaagt 366



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>gb|AC102075.7| Mus musculus chromosome 5, clone RP23-389F20, complete sequence
          Length = 208311

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 50     tcccagcccacagccagaagt 70
              |||||||||||||||||||||
Sbjct: 141976 tcccagcccacagccagaagt 141956



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>gb|AC108798.11| Mus musculus chromosome 5, clone RP23-419N6, complete sequence
          Length = 211603

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 50     tcccagcccacagccagaagt 70
              |||||||||||||||||||||
Sbjct: 166885 tcccagcccacagccagaagt 166865



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>emb|AL035258.10|HS1097P24 Human DNA sequence from clone RP5-1097P24 on chromosome 20p11.21-12.3
              Contains a putative novel gene, ESTs, STSs and GSSs,
              complete sequence
          Length = 133072

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     tcccagcccacagccagaa 68
              |||||||||||||||||||
Sbjct: 105679 tcccagcccacagccagaa 105697



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>emb|AJ632267.2| Arabidopsis lyrata subsp. petraea gene family (ATTI1, ATTI2, ATTI4,
            ATTI6) for trypsin inhibitor
          Length = 6788

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 38   tcaccgcgccgatcccagc 56
            |||||||||||||||||||
Sbjct: 5643 tcaccgcgccgatcccagc 5625



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>gb|AC098586.3| Homo sapiens BAC clone RP11-109F18 from 4, complete sequence
          Length = 150172

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 49     atcccagcccacagccaga 67
              |||||||||||||||||||
Sbjct: 142174 atcccagcccacagccaga 142192


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 363,384
Number of Sequences: 3902068
Number of extensions: 363384
Number of successful extensions: 23927
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23920
Number of HSP's gapped (non-prelim): 7
length of query: 70
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 49
effective length of database: 17,151,101,840
effective search space: 840403990160
effective search space used: 840403990160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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